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Anopheles gambiae
cluster # 6611 cluster # 6611       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6611#0 length = 1472 sequences # 4  
consensus_6611#1 length = 495 sequences # 1  

consensusID : consensus_6611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1472
fasta sequence
                              [TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAGCTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATACTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGCTGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCGGCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC-GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT-GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT-GGGGGTCGGCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGGTTTCGGCTG-GCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCT-CGGTTCCCGGACGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCGTAATCCGCAAAAAAAA]

[+] EMBL CNS09JL6             [TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAGCTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATACTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGCTGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCGGCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTG CGTGGGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGGTCGGCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CNS09JL7             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCCGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCCGGGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT GGGGGTC GCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGGTTTCGGCTG GCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCT CGGTTCCCGGACGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCG                ]
[+] EMBL AGA282588            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT GGGGGTCGGCTTCGCGGCCGATCTGGTCGTTTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGG TTCGGCTGCGCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGATATGCGCCCGATCGAGGACGA                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA280957            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tgGGCGTCCAGTATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGATGGGCGACATGCGGGACGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCGTCCGGTTCCCGGAAGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCCGTTCGACGACCCAGTTCCATTCCTGCGCAATTTAAACCAAACTTTGACGGGGATTTCTGCCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAAT AATTTATTCGTAATCCGCAAAAAAAA]


>consensus_6611#0 TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATAT CCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAG CTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAA AATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATA CTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGC TGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCG GCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCAC TGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCG AGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAAC GCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGG TGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGC TGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGC AGGGCGGGCTGCAGCCGGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACA CGCGCGGCTTTGCCGTGGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCA CGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGTCG GCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGT TTCCCACGCGTACGGCCCGGTTTCGGCTGGCGCTGACACGCGCCGGACAGATCAACCTGA AGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGT GTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCA GCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAG CCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCTCGGTTCCCGGA CGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTC GCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGG GGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAA TTAATAAATTTATTCGTAATCCGCAAAAAAAA



consensusID : consensus_6611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence
                              [AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGATTGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGCGGGCGGTANTTGCAC]

[+] EMBL BX469213             [AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGATTGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGCGGGCGGTANTTGCAC]


>consensus_6611#1 AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGAT TGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATC ACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTG CCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGC CCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGAT GAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGC ACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATA GCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGC GGGCGGTANTTGCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6611#0      ------------------------------------------------------------
consensus_6611#1      AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGAT 60
                                                                                  

consensus_6611#0      ----------------------------TCCTCCGTTCTCCGGGCACGCGTGCGCCCATC 32
consensus_6611#1      TGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATC 120
                                                  ********************************

consensus_6611#0      ACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAA 92
consensus_6611#1      ACAACCTCCATCGCCCAA---GCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAA 177
                      **************** *   ************** ************************

consensus_6611#0      GTGCCCATTCCGGCCTCCGGTTCTCCAGC-TACCGCCGAGGATGCGACCACCCGACCGTC 151
consensus_6611#1      GTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTC 237
                      ************** ************** * **************  ************

consensus_6611#0      GGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGT 211
consensus_6611#1      GGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGT 297
                      ***** ********************* ********************************

consensus_6611#0      GATGAGCGTTCGGCATGCGGACGTC-GATACTCCCGTGTTCATGCCGGTTGGTACGCAGG 270
consensus_6611#1      GATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGG 357
                      *************** ********* *********************** **********

consensus_6611#0      G-CACGCTGAAGGGGG----TGCTGCCCGAGCAGCT--GCTTGCCCTCGACTGCCGCATC 323
consensus_6611#1      GGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATC 417
                      * ********** ***     *  * *********   * ********************

consensus_6611#0      AT-GCTCGGCAACACGTACCATC-TCGGTAT-GCGG-CCCGGCACAACCGTGCTGGAGAA 379
consensus_6611#1      ATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAA 477
                      ** ****** ************* ******* **** ********** ************

consensus_6611#0      GGCGGGCGGT--TTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGG 437
consensus_6611#1      GGCGGGCGGTANTTGCAC------------------------------------------ 495
                      **********  ******                                          

consensus_6611#0      GGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTC 497
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      CAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAG 557
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      AACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACG 617
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGC 677
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCCG 737
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGTG 797
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACG 857
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGTCGGCTTCGCGGCCGATCTG 917
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCC 977
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      CGGTTTCGGCTGGCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCG 1037
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      CAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGC 1097
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACAC 1157
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      AACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGC 1217
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      TTTCCGGCGTTTGTGAAATCGTACATGGCCCTCGGTTCCCGGACGATACGGTGCCGCAAT 1277
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGAC 1337
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAAT 1397
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      GTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCGT 1457
consensus_6611#1      ------------------------------------------------------------
                                                                                  

consensus_6611#0      AATCCGCAAAAAAAA 1472
consensus_6611#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)