These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1202 fasta sequence [GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAAGAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTCCAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCTGCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTTGTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTGCTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNGCTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCCACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTAGTGTCCTAACGGTTGGGCGGAACGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGA-GAAGGGACACGTTCCAGAGGGTATGATA-GTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAAACGTGATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGACGACGATACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTA] [+] EMBL AL930311 [GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAAGAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTCCAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCTGCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTTGTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTGCTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNGCTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCCACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTAGTGTCCTAACGGTTGGGCGGAACGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGTGTATAAGGGGAAGCACACAGGACGAAGGGACACGTTGCAGAGGGTATGATACGTGTCCAAACTTTCCCTTCCCTCATGATGGGGGA ] [+] EMBL BX616128 [ GACCTCTGCTTCTCCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGG GCT GCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGCACGTGTCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTGGATAGGCGCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGA GAAGGGACACGTTCCAGAGGGTATGATA GTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGG ] [+] EMBL BX612914 [ AGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGA GAAGGGACACGTTCCAGAGGGTATGATA GTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTTACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATGTGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAGGGGAAGGTCCGTTCCGAACAAAACGGAACAATCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAAACGTGATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGACGACGATACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTA] consensusID : consensus_6614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [AGATCGCAGAGGTCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGGGCTGCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTGTCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGTTCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT] [+] EMBL AL697148 [AGATCGCAGAGGTCTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGGGCTGCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCCACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTGTCGGTAGTGTCCTAACGGTTGCGATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGCGTGCAACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAAGCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGTTCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT] consensusID : consensus_6614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [CCGCCCACGCGTCCGAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACGTAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGAAGATGAGCAACAACGCCAGAACTACAACGACGACGATACCGCGCAATTCTTCGATCGTTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTATTTTATTACC] [+] EMBL BM582549 [CCGCCCACGCGTCCGAGCGCATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACGTAGGGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTAACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGAAGATGAGCAACAACGCCAGAACTACAACGACGACGATACCGCGCAATTCTTCGATCGTTCGAGTCACACGAAGCAAATGATTAATAAAGTGAACCGTATTTTATTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6614#0 GCAGAATCCCCCGAGGTTTCACACAGCAGCACAGCAAACGGCGACGGTGGCGGCAGGCAA 60 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 GAAGGATCAGCTCAAGATGGACAAGAACCACTTCACGAAGGACGCGGAAGCGTCGTCCTC 120 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 CAACTCGGACGAAAGCTGGGAGAAGGAGTTCGAGCTGGAATGAGGCGAACCGATCGATCT 180 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 GCGCCGCGAGCTGTCCGAGTGCGCCGATTGGTCATCGTTTCGTTACGCTCCCTAGGATTT 240 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 GTTTTTCATCCTCCCTCCCCCAGCTTTTTCGACCTCAAACTGCGATGAACTGGACCTCTG 300 consensus_6614#1 ---------------------------------------------------AGATCGCAG 9 consensus_6614#2 ---------------------------------------------CCGCCCACGCGTCCG 15 * * consensus_6614#0 CTTCTCCTTCTCCTCTTCTCGATTGATACGAATGGCGTCCAACACAATACGCGGTGGGNG 360 consensus_6614#1 AGGT--CTTCTCCTCTTCTCGATTGAAACGAATGGCGTCCAACACGATACGCGGTGGGGC 67 consensus_6614#2 AGCGCATTTCGCACAGTTGCTCTTTGAGT---TTCCTTCCAGAGGGATAAGTAGTAGTGA 72 *** * * * ** * * **** *** * ** * consensus_6614#0 CTGGCTGGTCCCGGAATTGAGTGGATTCCGTGTGCTTCGCGACTACGTCGAAGGTGCCCC 420 consensus_6614#1 T--GCTGGTCCCGGAATTGAGTGGATTTCGTGTGATTCGCGGCTACGTCGTAGGTGCCCC 125 consensus_6614#2 TACGTAGG----GGAA---GGTCCGTTCCGAACAAAACGGAACAAG--CGACCAT-TTCC 122 * ** **** ** ** ** ** * * ** * ** consensus_6614#0 ACACGTGGGTGGATGTAAGGGTTTTGTGCAAAATTAAGGCAGAACTTG-CACGTGTCGGT 479 consensus_6614#1 ACACGTGGGTGAATATAAGGGTTTTGTGCAAAATTAAGGCAGAACTTGGCACGTGTCGGT 185 consensus_6614#2 ATCTATCCATCTACCTAACACTCTAGT-TAAAAACGATCCGGCGACCGCGTTATGTT--T 179 * * * * *** * * ** **** * * * * *** * consensus_6614#0 AGTGTCCTAACGGTTGGG-CGGAACGTTTT--GGATAGGCGC-GAAAAGTGGAAGCGTGC 535 consensus_6614#1 AGTGTCCTAACGGTTGCG-ATGAGCGTTTTTTGGATAGGCGCCGAAAAGTGGAAGCGTGC 244 consensus_6614#2 CATGT----ATGTGTGTGTATGTGCGTTTTAGGTTTAGCTCTAATAACCCTGCTACTTCT 235 *** * * ** * * ****** * *** ** * * * consensus_6614#0 AACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAA 595 consensus_6614#1 AACGTTTCTGATAATCGTTTGATTTATTTTACTAGTTTATATTGTTAGACTATTAGTTAA 304 consensus_6614#2 AACCCTTCTGGCCATCTGGTAAAAACGTGATCGTGACTATGTTTTTGGAGA---AGATGA 292 *** ***** *** * * * * * *** ** ** ** ** * * consensus_6614#0 GCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGT 655 consensus_6614#1 GCGATCGGCGTACGTCGCATGTGTGCGTATAAGGGGAAGCACACAGGAGAAGGGACACGT 364 consensus_6614#2 GCAA-CAACGCCAGAACTACAACGACG-ACGATACCGCGCAATTCTTCGATCGTTCGAGT 350 ** * * ** * * ** * * *** ** * * ** consensus_6614#0 TCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCATGATGGGGGATTGCAGATTT 715 consensus_6614#1 TCCAGAGGGTATGATAGTGTCCAAACTTTCCCTTCCCTCAT------------------- 405 consensus_6614#2 CACACGAAGCA-AATGATTAATAAAGTGAACCGTATTTTATTACC--------------- 394 ** * * ** * *** * ** * * ** consensus_6614#0 ACTAGAGCGAATGAATTGTTTATTTTTATATACTATTACTACTATTACTAGACAAATATG 775 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 TGTACTTTGTGTATCTCCTTTTTAAAAAAGCAAAACTGTTCCAACTGCGGAGAGGTAGCG 835 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 CATTTCGCACAGTTGCTCTTTGAGTTTCCTTCCAGAGGGATAAGTAGTAGTGATACATAG 895 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 GGGAAGGTCCGTTCCGAACAAAACGGAACAAGCGACCATTTCCATCTATCCATCTACCTA 955 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 ACACTCTAGTTAAAAACGATCCGGCGACCGCGTTATGTTTCATGTATGTGTGTGTATGTG 1015 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 CGTTTTAAGTTTAGCTCTAATAACCCTGCTACTTCTAACCCTTCTGGCCATCTGGTGAAA 1075 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 ACGTGATCGTGACTATGTTTTTTTGGAGGAGATGAGTAACAACGCCAGAACAACAACGAC 1135 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 GACGATACCGCGCAATTCTTCGATCATTCGAGTCACACGAAGCAAATGATTAATAAAGTG 1195 consensus_6614#1 ------------------------------------------------------------ consensus_6614#2 ------------------------------------------------------------ consensus_6614#0 AACCGTA 1202 consensus_6614#1 ------- consensus_6614#2 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||