These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CCGGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCAAAAAATTCTTTTAGCATTGCAGCAATAAAAAAAGCATAGGTTGCACGGAGTTTGAGTAGCTTACAAGTACTCTTGTACCTTAATGTACATTACCATCTTACAGGACACATTGAACTATCTTAGAAGTAAGCTTTAATAATAACTGAAGAATATTTGCAAAGTTCACCAAGAACTTATCTTTTTTGTGTCCAACTTAACTGAATATGGAGAAAAAGAGCTACTTTTCAAAGACAAATGAAATACGTCCATGATTGTAAATATGTAAAAAATTTAATACATTTCATGATAGTACTCAAAAATTAAAAAAAAAAATCCAGTTTCAATCCACTAGTGAATTCAACTTTTTAACATGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTT] [+] EMBL BM655427 [CCGGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCAAAAAATTCTTTTAGCATTGCAGCAATAAAAAAAGCATAGGTTGCACGGAGTTTGAGTAGCTTACAAGTACTCTTGTACCTTAATGTACATTACCATCTTACAGGACACATTGAACTATCTTAGAAGTAAGCTTTAATAATAACTGAAGAATATTTGCAAAGTTCACCAAGAACTTATCTTTTTTGTGTCCAACTTAACTGAATATGGAGAAAAAGAGCTACTTTTCAAAGACAAATGAAATACGTCCATGATTGTAAATATGTAAAAAATTTAATACATTTCATGATAGTACTCAAAAATTAAAAAAAAAAATCCAGTTTCAATCCACTAGTGAATTCAACTTTTTAACATGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTT] consensusID : consensus_6616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCGGACGCGTGGGGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTTTAGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGATTTAAATAAAGTCCTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCCA] [+] EMBL BM638339 [CCGCGGACGCGTGGGGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTTTAGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGATTTAAATAAAGTCCTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCCA] consensusID : consensus_6616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [AGATCGCCGAGGAGAACAACAATAAGCTATTCAACTTTCTTTACCGGCGTAACTCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGCCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTTGAGCAAACGACGGCGTGGAAGTTTCCAAGGGAGAACTTACAACTGGGTTGCCATCCGTTAGAATACTTTAAATTAAACTACACGATTTCCATTTTAGGAAAAACCAATTAAATTCCACCAGGAATNGTTACTCCTTGGCCACCTTGGTTTCTTAAGATTTCAAAAATAAGGATTACCTGGCAAATTATTGAAGGGGAAACCGCCTCCGGAGGAGCAATTTCAAAGGCTTCAAAACCCTTTTAAAACACACGCATTAACACCCACCATTTCTTAAATTTAAACTC] [+] EMBL AL695678 [AGATCGCCGAGGAGAACAACAATAAGCTATTCAACTTTCTTTACCGGCGTAACTCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGCCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTTGAGCAAACGACGGCGTGGAAGTTTCCAAGGGAGAACTTACAACTGGGTTGCCATCCGTTAGAATACTTTAAATTAAACTACACGATTTCCATTTTAGGAAAAACCAATTAAATTCCACCAGGAATNGTTACTCCTTGGCCACCTTGGTTTCTTAAGATTTCAAAAATAAGGATTACCTGGCAAATTATTGAAGGGGAAACCGCCTCCGGAGGAGCAATTTCAAAGGCTTCAAAACCCTTTTAAAACACACGCATTAACACCCACCATTTCTTAAATTTAAACTC] consensusID : consensus_6616#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CCGCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGGCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGAT] [+] EMBL BM615429 [CCGCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGGCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGAT] consensusID : consensus_6616#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCCAAATTATTGAATTTTAAAATAAAAGGTCCCTTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCT] [+] EMBL BM625717 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCCAAATTATTGAATTTTAAAATAAAAGGTCCCTTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6616#1 ---CCGCGGACGCGTGGGGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGAT 57 consensus_6616#4 ------------------------------------------------------------ consensus_6616#3 ------------------------------------------------------------ consensus_6616#2 ------------------------------------------------------------ consensus_6616#0 CCGGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTA 60 consensus_6616#1 TCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATAT 117 consensus_6616#4 ------------------------------------------------------------ consensus_6616#3 ------------------------------------------------------------ consensus_6616#2 -------------AGATCGCCGAGGAGAACAACAATAAGCTATTCAACTTTCTTTACCGG 47 consensus_6616#0 TTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGAT 120 consensus_6616#1 TTTATTACAACAAATTGATT-ACATGTTGATTACATGTGATTACATGTTTAACAATTAAC 176 consensus_6616#4 ------------------------------------------------------------ consensus_6616#3 ----CCGCAGAAAATCAAGT-AAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAA 55 consensus_6616#2 CGTAACTCAGAAAATCAAGT-AAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAA 106 consensus_6616#0 CGATGCATAAAAGAACAAATCAAAAAATTCTTTTAGCATTGCAGCAATAAAAAAAGCATA 180 consensus_6616#1 AACAACAGCAAAATCATCAAAGAGTTTT----TCTATTTCTCATGCTTTAGGTAAAATCG 232 consensus_6616#4 ------------------------------------------------------------ consensus_6616#3 CGTCACGTGTTCGGTTCCGAGCCGCTTG--AGCTCGGCTAGAATAGAAACGGTAAAATCG 113 consensus_6616#2 CGTCACGTGTTCGGTTCCGAGCCGCTTG--AGCTCGCCTAGAATAGAAACGGTAAAATCG 164 consensus_6616#0 GGTTGCACG---GAGTTTGAGTAGCTTACAAGTACTCTTGTACCTTAATGTACATTACCA 237 consensus_6616#1 CTTGATCGCAGGTTTTGGAAATTATT-GAG-------CAAACGACGGC-GTGGAAGTTTC 283 consensus_6616#4 ----------------------------------------------CC-GCGGACGCGT- 12 consensus_6616#3 CTTGATCGCAGGTTTTGGAAATTATT-GAG-------CAAACGACGGC-GTGGAAGTTTC 164 consensus_6616#2 CTTGATCGCAGGTTTTGGAAATTATTTGAG-------CAAACGACGGC-GTGGAAGTTTC 216 consensus_6616#0 TCTTACAGGACACATTGAACTATCTTAGAAGTAAGCTTTAATAATAACTGAAGAATATTT 297 * * ** * consensus_6616#1 CA-AGGAGAACTTACAACTGGTGCATCGT------AGAATACTTTAAT---AACTACACG 333 consensus_6616#4 ---GGGCGGACGC-------GTGGGTCGT------AGAATACTTTAAT---AACTACACG 53 consensus_6616#3 CA-AGGAGAACTTACAACTGGTGCATCGT------AGAATACTTTAAT---AACTACACG 214 consensus_6616#2 CAAGGGAGAACTTACAACTGGGTTGCCATCCGTT-AGAATACTTTAAATTAAACTACACG 275 consensus_6616#0 GCAAAGTTCACCAAGAACTTATCTTTTTTGTGTCCAACTTAACTGAATATGGAGAAAAAG 357 * ** * * ** * ** * * * * consensus_6616#1 ATTTCATTTAGAAACATAAATCACAGATGTAC-----TCTGCACTATTCTAGATTCAAAT 388 consensus_6616#4 ATTTCATTTAGAAACATAAATCACAGATGTAC-----TCTGCACTATTCTAGATTCAAAT 108 consensus_6616#3 ATTTCATTTAGAAACATAAATCACAGATGTAC-----TCTGCACTATTCTAGATTCAAAT 269 consensus_6616#2 ATTTCCATTTTAGG-AAAAACCAATTAAATTC-----CACCAGGAATNGTTACTCCTTGG 329 consensus_6616#0 AGCTACTTTTCAAAGACAAATGAAATACGTCCATGATTGTAAATATGTAAAAAATTTAAT 417 * * ** * * *** * * * * consensus_6616#1 AGATACTGCAATA----TGAGGAACGCTCGGAGAGAATTAAGCT--CAAACCTTAAAAAG 442 consensus_6616#4 AGATACTGCAATA----TGAGGAACGCTCGGAGAGAATTAAGCT--CAAACCTTAAAAAG 162 consensus_6616#3 AGATACTGCAATA----TGAGGAACGCTCGGAGAGAATTAAGCT--CAAACCTTAAAAAG 323 consensus_6616#2 CCACCTTGGTTTC----TTAAGATTTCAAAAATAAGGATTACCTGGCAAATTATTGAAGG 385 consensus_6616#0 ACATTTCATGATAGTACTCAAAAATTAAAAAAAAAAATCCAGTTT-CAATCCACTAGTGA 476 * * * * * * * * * *** consensus_6616#1 ATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGATTTAAAT-------- 494 consensus_6616#4 ATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCCAAATTATTGAATTTTAAAATA 222 consensus_6616#3 ATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGAT-------------- 369 consensus_6616#2 GGAAACCGCCTCCGGAGGAGCAATTTCAAAGGCTTCAAAACCCTTTTAAAACACACGCAT 445 consensus_6616#0 ATTCAACTTTTTAACATGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATT 536 * * * ** * * consensus_6616#1 -AAAGTCC--TTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGT 551 consensus_6616#4 AAAGGTCCCTTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGT 282 consensus_6616#3 ------------------------------------------------------------ consensus_6616#2 TAACACCCACCATTTCTTAAATTTAAACTC------------------------------ 475 consensus_6616#0 CTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATT 596 consensus_6616#1 CTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAAT 611 consensus_6616#4 CT---------------------------------------------------------- 284 consensus_6616#3 ------------------------------------------------------------ consensus_6616#2 ------------------------------------------------------------ consensus_6616#0 TTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAA 656 consensus_6616#1 AATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAA 671 consensus_6616#4 ------------------------------------------------------------ consensus_6616#3 ------------------------------------------------------------ consensus_6616#2 ------------------------------------------------------------ consensus_6616#0 CAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTT------------------ 698 consensus_6616#1 GAACAAATCCA 682 consensus_6616#4 ----------- consensus_6616#3 ----------- consensus_6616#2 ----------- consensus_6616#0 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||