|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 808 fasta sequence
[AAATGTGTCTTCATGATAATGCAAATAATACGAAAATTATTAGAAGAATGAATTCATCGAACCATGAAACAAAACACCGTTAGGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGTAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATTGTTGGCTGTTTAGATAACGGGGATGCATACACCTGTTGAGATGTAGGGAGCGCTTCGTTAATTTTTTTGTTTTTTTATCGGTTCATAATCCATAAAATATTAAATATTTGACCTTATGTATTAGAGTTTGTTACGAGTTGTCGAAAAATACTGCGCTCGAATTCAGTGAAATAATTGTGAATTATAAATTGCACTTCATTATTCTTCCATCGAATATGTAATGTCAAGGAAGAATGTATTTTTAGCGAGAGATTTGAAGAAGAAGGTTTTATGCTTTTCTTGTAAACGGAGGGGAAATGATAAGAAGAGTGCGTTCCAGGAAAACCAAATTAGCTGTTGCGTCTAGGACGGACGGGTAGGGCAGTAGGAGAATCTATTGGCATTTTATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACAC-CATATATATATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAAATCTACAACCAACCAAAAAAAA]
[+] EMBL BX626761 [AAATGTGTCTTCATGATAATGCAAATAATACGAAAATTATTAGAAGAATGAATTCATCGAACCATGAAACAAAACACCGTTAGGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGTAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATTGTTGGCTGTTTAGATAACGGGGATGCATACACCTGTTGAGATGTAGGGAGCGCTTCGTTAATTTTTTTGTTTTTTTATCGGTTCATAATCCATAAAATATTAAATATTTGACCTTATGTATTAGAGTTTGTTACGAGTTGTCGAAAAATACTGCGCTCGAATTCAGTGAAATAATTGTGAATTATAAATTGCACTTCATTATTCTTCCATCGAATATGTAATGTCAAGGAAGAATGTATTTTTAGCGAGAGATTTGAAGAAGAAGGTTTTATGCTTTTCTTGTAAACGGAGGGGAAATGATAAGAAGAGTGCGTTCCAGGAAAACCAAATTAGCTGTTGCGTCTAGGACGGACGGGTAGGGCAGTAGGAGAATCTATTGGCATTTTATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACAC CATATATATATATAGAAGCGTACATGTCng ]
[+] EMBL BM596162 [ ccgTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATTGTTGGCTGTTTAGATAACGGGGATGCATACACCTGTTGAGATGTAGGGAGCGCTTCGTTAATTTGTTTGTTTTTTTATCCGTTCATAATCCATAAAATATTAAATATTTGACCTTATGTATTAGAGTTTGTTACGAGTTGTCGAAAAATACTGCGCTCGTATTCAGTGAAATAATTGTGAATTATAAATTGCACTTCATTTTTCTTCCATCGAATATGTAATGTCAAGGAATAGTGTATTTTTAGCGAGAAATTTGAAGAACAAGGTTTTATGCTTTTCTTGTAAACGGAGGGGAAATGATAAGAAGAGTGCGTTCCAGGAAAATCAAATTAGCTGTTGCGTCTAGGACGGACGGGTAGGGCAGTAGGAGAATCTATTGGCATTTTATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGGCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGA ]
[+] EMBL AGA280971 [ tTTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACACACATATATATATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAAATCTACAACCAACCAAAAAAAA]
[-] EMBL AGA282602 [ tTTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACACACATATATATATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAAATCTACAACCAA ]
consensusID : consensus_6621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[TCGGCACGAGGTGTAACAACAAGATCCGTTCTGTTGATCTACATAAGNGTAATAGCAGAGAGCAAATGTGTCTTCATGATAATGCCAATAATACGAAAATTATTAGAAGAATGAATTTCCTCGAACCCNTGAAACAAAACACCGTTAGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATATGTTGGCTGTTTAGATAAACGGGGATGCATACACCTGTTGAGATAGTAGGGAGCGCTTCGTTAACTTTGTACATAGTNGTTTTATCGGTTCATAATCCATAAAATATTNAAATATTTGACCTCTATGGTATTAGCAGTTTGTNAACGAGTTGTCGAAACATACTGCGCTCGAATTCACGTGAAATAAATTGTGGAATCTTATAANATTGCGACTTCAGTTATTCTTACCATACGGAATATGTACATGTCACAGGGAAGAATGTATTTTTAGCGAGAGATCTTGAAAGACAGAAGGTTTTATGCGTTTTCTCTGTTAAAACCGGGAAGGGAAATGATACAGGACAGGAGGTGCGTNCCAGGGAAAAACCAAAAGTTAGCCTGTCTGCGGTCTAGGACGGACCGGGTAGGGCCAGTCANGGAGG]
[+] EMBL BX469647 [TCGGCACGAGGTGTAACAACAAGATCCGTTCTGTTGATCTACATAAGNGTAATAGCAGAGAGCAAATGTGTCTTCATGATAATGCCAATAATACGAAAATTATTAGAAGAATGAATTTCCTCGAACCCNTGAAACAAAACACCGTTAGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATATGTTGGCTGTTTAGATAAACGGGGATGCATACACCTGTTGAGATAGTAGGGAGCGCTTCGTTAACTTTGTACATAGTNGTTTTATCGGTTCATAATCCATAAAATATTNAAATATTTGACCTCTATGGTATTAGCAGTTTGTNAACGAGTTGTCGAAACATACTGCGCTCGAATTCACGTGAAATAAATTGTGGAATCTTATAANATTGCGACTTCAGTTATTCTTACCATACGGAATATGTACATGTCACAGGGAAGAATGTATTTTTAGCGAGAGATCTTGAAAGACAGAAGGTTTTATGCGTTTTCTCTGTTAAAACCGGGAAGGGAAATGATACAGGACAGGAGGTGCGTNCCAGGGAAAAACCAAAAGTTAGCCTGTCTGCGGTCTAGGACGGACCGGGTAGGGCCAGTCANGGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6621#0 ------------------------------------------------------------
consensus_6621#1 TCGGCACGAGGTGTAACAACAAGATCCGTTCTGTTGATCTACATAAGNGTAATAGCAGAG 60
consensus_6621#0 ---AAATGTGTCTTCATGATAATGCAAATAATACGAAAATTATTAGAAGAATGAATT-CA 56
consensus_6621#1 AGCAAATGTGTCTTCATGATAATGCCAATAATACGAAAATTATTAGAAGAATGAATTTCC 120
********************** ******************************* *
consensus_6621#0 TCGAACC-ATGAAACAAAACACCGTTAGGGGGCTTATTTTCTTTTCCTCACCTTTATGTA 115
consensus_6621#1 TCGAACCCNTGAAACAAAACACCGTTAGGGG-CTTATTTTCTTTTCCTCACCTTTATGTA 179
******* ********************** ****************************
consensus_6621#0 GTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGTAACAAGTACAAGAA 175
consensus_6621#1 GTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAA 239
********************************************* **************
consensus_6621#0 ACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTAT-TGTTGGCTGTTTAGA 234
consensus_6621#1 ACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATATGTTGGCTGTTTAGA 299
******************************************** ***************
consensus_6621#0 TAA-CGGGGATGCATACACCTGTTGAGAT-GTAGGGAGCGCTTCGTTAATTTTTTT---- 288
consensus_6621#1 TAAACGGGGATGCATACACCTGTTGAGATAGTAGGGAGCGCTTCGTTAACTTTGTACATA 359
*** ************************* ******************* *** *
consensus_6621#0 GTTTTTTTATCGGTTCATAATCCATAAAATATTAAA-TATTTGACCT-TATG-TATTAG- 344
consensus_6621#1 GTNGTTTTATCGGTTCATAATCCATAAAATATTNAAATATTTGACCTCTATGGTATTAGC 419
** ***************************** ** ********** **** ******
consensus_6621#0 AGTTTGTTA-CGAGTTGTCGAAAAATACTGCGCTCGAATTCA-GTGAAATAA-TTGTGAA 401
consensus_6621#1 AGTTTGTNAACGAGTTGTCGAAACATACTGCGCTCGAATTCACGTGAAATAAATTGTGGA 479
******* * ************* ****************** ********* ***** *
consensus_6621#0 ---TTATAAA-TTGC-ACTTCA-TTATTCTTCC---ATCGAATATGTA-ATGTCA--AGG 449
consensus_6621#1 ATCTTATAANATTGCGACTTCAGTTATTCTTACCATACGGAATATGTACATGTCACAGGG 539
****** **** ****** ******** * * ********* ****** **
consensus_6621#0 AAGAATGTATTTTTAGCGAGAGATTTGAAGA---AGAAGGTTTTATGCTTTTCTTGT--- 503
consensus_6621#1 AAGAATGTATTTTTAGCGAGAGATCTTGAAAGACAGAAGGTTTTATGCGTTTTCTCTGTT 599
************************ * * * ************** *** * *
consensus_6621#0 -AAAC--GGAGGGGAAATGATA-AGAAGAG----TGCGTTCCAGG--AAAACCAAA--TT 551
consensus_6621#1 AAAACCGGGAAGGGAAATGATACAGGACAGGAGGTGCGTNCCAGGGAAAAACCAAAAGTT 659
**** *** *********** ** * ** ***** ***** ********* **
consensus_6621#0 AGC-TGT-TGCG-TCTAGGACGGAC-GGGTAGGGC-AGTAGGAGAATCTATTGGCATTTT 606
consensus_6621#1 AGCCTGTCTGCGGTCTAGGACGGACCGGGTAGGGCCAGTCANGGAGG------------- 706
*** *** **** ************ ********* *** **
consensus_6621#0 ATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAA 666
consensus_6621#1 ------------------------------------------------------------
consensus_6621#0 CTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACACCATATATAT 726
consensus_6621#1 ------------------------------------------------------------
consensus_6621#0 ATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAA 786
consensus_6621#1 ------------------------------------------------------------
consensus_6621#0 ATCTACAACCAACCAAAAAAAA 808
consensus_6621#1 ----------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||