These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1241 fasta sequence [TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCTACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAATGGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCAAAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAACGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAACAGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACAACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAACATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAATCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG] [+] EMBL BX610301 [TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCTACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAATGGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCAAAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGGAAATAATAGATATAG ] [+] EMBL BM651542 [ ccgTAATGGCATGCCCCCTGCAGTGAGGAAATGGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCAAAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCA ] [+] EMBL BX625419 [ CGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAGAATGCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCCCAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATTTCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTACAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACAT ] [+] EMBL BX612974 [ ACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAACGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAACAGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACAACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAACATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAATCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG] consensusID : consensus_6624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAACAACCACAACAAAAACAACGACAACAAAAAATAAATAATAAACTGCAGCAAACGACACAC] [+] EMBL BX608457 [ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGATCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATGAACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAGAAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAGGAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAACCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAGAGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCAATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACAAGCAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAACAACCACAACAAAAACAACGACAACAAAAAATAAATAATAAACTGCAGCAAACGACACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6624#0 TCAGTGTGTGAGTGAGTGAGTCGCGGAGGTGAACTGTAAATGTATAAATGTTAAGTTTCT 60 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 ACTTCATAATAATAAAAATAATATTTAAATTTAATGGCATGCCCCCTGCAGTGAGGAAAT 120 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 GGATGAAGGTGAGGGAGAGGAAAGAGGGGGGCTCGCGATTAGTAGGAAAGGGAACAGTCA 180 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 AAATGGGCGGAATGACAGTAAACTACACTATCTGGACACTATGATGTACTGGATTCGAAG 240 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 AATCCTAGCGAGTAAGATAACCTAGATAAGTTAGTCAATATTTCCCCATTTTCCCACGCC 300 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 CAGGAATGCGGTAAGATGCGGCCTGCAAAGAAGAATAAGAAGAAAAAGCAGACCAGCATT 360 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 TCGTTCCAGGGCCGCGCCGAATTTAAGACTTAAACCGACTGGGACACGGGACAAGCCGTA 420 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 CAACCGTTGTAAGATAGGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGA 480 consensus_6624#1 --ACCGTTGTAAGATATGCACAGATAAGACACAGATACACGAGTGAAACTGCAACCCAGA 58 ************** ******************************************* consensus_6624#0 TCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATG 540 consensus_6624#1 TCGATAAACACACAAATGCGTAAACATTTTAGTAAGAAAGAGAAGCAAACAATACGAATG 118 ************************************************************ consensus_6624#0 AACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAG 600 consensus_6624#1 AACACCCCCCAACAACAAAAAAAGTGACGAAAAACGAGTTTGTGAAAATAATAGATATAG 178 ************************************************************ consensus_6624#0 AAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAG 660 consensus_6624#1 AAACATGGAGTAACATGGACGAATTAAATCAAACGTTGTAGAGAATGGGGCAAAGAAGAG 238 ************************************************************ consensus_6624#0 GAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAA 720 consensus_6624#1 GAAGCAGGGGAGAAATGTGTAATTAAACAGTAATCGAACAAAAAAGCCGAATTTTCTCAA 298 ************************************************************ consensus_6624#0 CCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAG 780 consensus_6624#1 CCCTTTCCACTTCATTTTAGCAAACACAGCAGATCGAGTGCTCTGATCAGTGCTACCTAG 358 ************************************************************ consensus_6624#0 AGGCACTAGAAGCACCATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCA 840 consensus_6624#1 AGGCACTAGAAGCACAATCGATCGAAGGAGACAGAACATGTAAGGCTAATCTAGATCCCA 418 *************** ******************************************** consensus_6624#0 ATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACA 900 consensus_6624#1 ATTGTAGGCAATACAGGAAGTCGGATAAGTAAAGCAGCAGTAAGTAAGAAAGAGCAAACA 478 ************************************************************ consensus_6624#0 AGCAAACTTGCTAACGGTGGCTCTAGCACGCGAAAGTGAACAAACAGACACAAAAACAAA 960 consensus_6624#1 AGCAAACTTGCTAACGGTGGCTCTATCACGCGAAAGTGAACAAACAGACACAAAAACAAA 538 ************************* ********************************** consensus_6624#0 CGATCACGAACAAAAACCAAACAACAGACATACAGAGTTACAAAGAAAAGGGTAAAAAAC 1020 consensus_6624#1 CAACCAC-AACAAAAAC--AACGACA-ACA---AAAAATAAATAATAAACTGCAGCAAAC 591 * * *** ********* *** *** *** * * ** * * *** * * **** consensus_6624#0 AGAACAGAAACAATGAGAAACAAACCACAAACTACAAACTGAAATGGTTTTCTTTTGACA 1080 consensus_6624#1 GACACAC----------------------------------------------------- 598 *** consensus_6624#0 ACATATTTTATCCCATGGAGCAGGAGGAAGCCGATGGAAAGAAGTAAACGAAACAAGAAC 1140 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 ATAAATCAAATAATCTCTCTGTATAAATCAAAACAACAAACAAACCAAAACACAAATAAA 1200 consensus_6624#1 ------------------------------------------------------------ consensus_6624#0 TCTAACAAAAACTACAACAATCATCACTTGTGGAGAGTGTG 1241 consensus_6624#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||