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Anopheles gambiae
cluster # 6626 cluster # 6626       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6626#0 length = 834 sequences # 3  
consensus_6626#1 length = 680 sequences # 1  
consensus_6626#2 length = 514 sequences # 1  

consensusID : consensus_6626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 834
fasta sequence
                              [CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCGTCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACACTGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT]

[+] EMBL BM632350             [CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCGTCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACACTGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAA                                                                                                                                                                                                                             ]
[+] EMBL BM621394             [                                                                                                                                       ccgATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT]
[+] EMBL BM579582             [                                                                                                                                                                     ccgCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCACGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCGGAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGCACAGATATCGAAAATAACCACTTAACTAAA                                                                                                                                                                                                            ]


>consensus_6626#0 CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCG TCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACAC TGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA AAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCA CGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGA AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT ACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAAGAAAGTGGC ACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAAAA ACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTCTC TCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCATA TGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT



consensusID : consensus_6626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAACGTGCTGTAACACGGCCTACT]

[+] EMBL BM635541             [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCGATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAACGTGCTGTAACACGGCCTACT]


>consensus_6626#1 CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGTAC CACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACAAC CGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAAAA AGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACG TGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAG TGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTG AATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTAC TGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAGAAAGTGGCAC AAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACA TAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTCTCTCG ATTGATACAGCCAACAGCCTATTGGCTTTTGCAGTGGCAAACAGTGTGCGCGTATGTAAC GTGCTGTAACACGGCCTACT



consensusID : consensus_6626#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence
                              [GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAACCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCAT]

[+] EMBL AL930883             [GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAGGTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAACCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAACGAAAAAACATAAATCCAAGAACCATCGTCAT]


>consensus_6626#2 GATCGCCGAGGGTTTGTACACTGCACATACAATTAGTCAGTGATCACGCTCTGCTGGAAG GTGTGTGACACAACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAGAAAAAAAACAAA CCAAGTGCANAAAGGGTATTAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAG CAAAGCCCACGTGGTCGGCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTAC AAAAATGAAGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAG CGGCGTTGTGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGG TGATCGTTACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAAC GAAAGTGGGCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAA AACGAAAAAACATAAATCCAAGAACCATCGTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6626#1      ------------------------------------------------------------
consensus_6626#2      ------------------------------------------------------------
consensus_6626#0      CCGGTCGTACCGTGCGCCCCGAGGTTGCCCTGTTAGAACGCCCTATATACAAACAAATCG 60
                                                                                  

consensus_6626#1      ------------------------------------------------------------
consensus_6626#2      ------------------------------------------------------------
consensus_6626#0      TCCGAAGGGACAACAGCGCTACAACCACGCAACACGCAAACGAACACCCGGTCGGCACAC 120
                                                                                  

consensus_6626#1      --CCGCGGACGCGTGGGCGGACGCGTGGGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT 58
consensus_6626#2      ------------------------------------------GATCGCCGAGGGTT-TGT 17
consensus_6626#0      TGCACTACACAGTTGCGCATCGGTAGTCGCTCGAGGCGGAAGTACCTCCATCAGTGGTGT 180
                                                                 * * **    **  ***

consensus_6626#1      ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA 118
consensus_6626#2      AC-ACTGCACA-TACAATTAGTCAGTGATCA-CGCTC-TGCTGGAA-GGTGTGTGACACA 72
consensus_6626#0      ACCACTGCACAATACAATTAGTCAGTGATCAACGCTCCTGCTGGAAAGGTGTGTGACACA 240
                      ** ******** ******************* ***** ******** *************

consensus_6626#1      ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA 178
consensus_6626#2      ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAA-GAAAAAAAACAAACC-AAGTGCAN 130
consensus_6626#0      ACCGTGTGTGTTGAGTAAAAGTGAAAGAAAGTAAAAGAAAAAAAACAAACCCAAGTGCAA 300
                      *********************************** *************** ******* 

consensus_6626#1      AAAGGGTATTAAAATATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCA 238
consensus_6626#2      AAAGGGTATTAAA-TATTAAAACAAAACGGTTGTTTTGAATTTTAAATCAGCAAAGCCCA 189
consensus_6626#0      AAAGGGTTTAAAAATATTTAAACGAAACGGTTGTTTTGAATTTTAAACCAGCAAAGCCCA 360
                      ******* * *** **** **** *********************** ************

consensus_6626#1      CGTGGTCGGCCCACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGA 298
consensus_6626#2      CGTGGTCGGCC-ACACATTTTGTGGTAAATTAGCGTTTCTTCGGTGAGCTACAAAAATGA 248
consensus_6626#0      CGTGGTCGGCGCACACATTTTGTGGTAAATTAGCGTTTGTTCGGTGAGCTACAAAAATGA 420
                      **********  ************************** *********************

consensus_6626#1      AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 358
consensus_6626#2      AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 308
consensus_6626#0      AGTGTACTTTTATTCACGGCAAGTGTAACAACGATACACGGTCCAAGGTTAGCGGCGTTG 480
                      ************************************************************

consensus_6626#1      TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 418
consensus_6626#2      TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 368
consensus_6626#0      TGAATGTAAACGAGTGGTCTGTGTGTGCGTGTAAGCATTAGCTGCAAGACGGTGATCGTT 540
                      ************************************************************

consensus_6626#1      ACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAA-GAAAGTGG 477
consensus_6626#2      ACTGATAAGCGAAAATTGCACTCCGTTTGTGCATTGCGTCAGTGTGTGTAACGAAAGTGG 428
consensus_6626#0      ACTGATAAGCGAAAATTGCACTCCGTTTGTGTATTGTGTGTTTGTGTGCAA-GAAAGTGG 599
                      ******************************* **** **   ****** ** ********

consensus_6626#1      -CACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAA-CGAAA 535
consensus_6626#2      GCACAAATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAA-CGAAA 487
consensus_6626#0      -CACAGATATCGAAAATAACCACTTAACTAAAACGCGCAAAAGCAAAAAAAAAAACGAAA 658
                       **** ************************************************ *****

consensus_6626#1      AAACATAAATCCAAGAACCATCGTCATCATTTCCGCCAAAAGTGCAAATAACAGCGATTC 595
consensus_6626#2      AAACATAAATCCAAGAACCATCGTCAT--------------------------------- 514
consensus_6626#0      AAACATAAATCCAAGAACCATCGTCATCATTTCCGCTAAAAGTGCAAATAACAGCGATTC 718
                      ***************************                                 

consensus_6626#1      TCTCGATTGATACAGCCAACAGCCTAT---TGGCTTTTGCAGTGGCAAACAGTGTGCGCG 652
consensus_6626#2      ------------------------------------------------------------
consensus_6626#0      TCTCGATTGATACAGCCAACAAACAGCCTATTGCTTTTGCAGTGGCAAACAGTGTGCGCA 778
                                                                                  

consensus_6626#1      TATGTAACGTGCTGTAACACGGCCTACT---------------------------- 680
consensus_6626#2      --------------------------------------------------------
consensus_6626#0      TATGTAACGTGCTATAACACGGCCTACTGTGTCTGGGTGACGCTGTAAGATCACGT 834
                                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)