These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1087 fasta sequence [CCGGCATAAGTGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCCAGCACAAGAAGGCGGGCCACGAAGCGTCCTCGCTGCCGTTCCAGCCACCGCGGCCACCGAAAGCGGTCCGCTCGCCGAGCGGCCAGCCGCCCCAGTATCTGAAGAAATCACCGTCGCCGACCAGCATCAAGCCGCTGCCGGGCCACCTGCCCGCCCAGTCACCGACCGACCAGACGACGGCCGCCGGCGGAACGACCGCAGCAGCGACGACGACCACGCTGGCCACGACCACCACCACCACCAGCATCGTGCCACCGACCAAGTACACCGAGGAGAACGAACTGATACCGAAGAATGCGCAGCTGGAACCGAAATCACCGGACGTGTCGGAGCTGGGCGATCCGAGCTCGTGCGAGAACGGGGACGGCACCGAGCACGGCAAGCTCGGTACGATCGTGTTCAAGCTACGCTTTCTGGCCGACCGG] [+] EMBL BM648830 [CCGGCATAAGTGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGAC ] [+] EMBL BM646418 [ ccgTGTGT GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGTGGTGCCAGCCGTGCTCGGGCTAACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCCAGCACAAGAAGGCGGGCCACGAAGCGTCCTCGCTGCCGTTCCAGCCACCGCGGCCACCGAAAGCGGTCCGCTCGCCGAGCGGCCAGCCGCCCCAGTATCTGAAGAAATCACCGTCGCCGACCAGCATCAAGCCGCTGCCGGGCCACCTGCCCGCCCAGTCACCGACCGACCAGACGACGGCCGCCGGCGGAACGACCGCAGCAGCGACGACGACCACGCTGGCCACGACCACCACCACCACCAGCATCGTGCCACCGACCAAGTACACCGAGGAGAACGAACTGATACCGAAGAATGCGCAGCTGGAACCGAAATCACCGGACGTGTCGGAGCTGGGCGATCCGAGCTCGTGCGAGAACGGGGACGGCACCGAGCACGGCAAGCTCGGTACGATCGTGTTCAAGCTACGCTTTCTGGCCGACCGG] consensusID : consensus_6627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 674 fasta sequence [CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGA-GGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGT-GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTCAGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCC] [+] EMBL BM647185 [CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTCAGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCC] [+] EMBL BM641027 [CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGGTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGAGACGTTAGTGTCGACGTTTGCT AAAAAACACATAGACGGACAACTCCTTTGAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGA GGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGTCTGTGT GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTCAGTGGTGCCAGCCGTGCTCGGGCTAACCGCAGCCGCCATACTGGCCGTGAC ] [+] EMBL BM618195 [ CGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGA GGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGT GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6627#0 CCGGCATAAGTGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATC 60 consensus_6627#1 --------CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATC 52 ************************************************* consensus_6627#0 CCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTC 120 consensus_6627#1 CCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTC 112 ************************************************************ consensus_6627#0 AGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTA 180 consensus_6627#1 AGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTA 172 ************************************************************ consensus_6627#0 TTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGA 240 consensus_6627#1 TTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGA 232 ************************************************************ consensus_6627#0 CGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGC 300 consensus_6627#1 CGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGC 292 ************************************************************ consensus_6627#0 GTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTG 360 consensus_6627#1 GTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTG 352 ************************************************************ consensus_6627#0 TGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGT 420 consensus_6627#1 TGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGT 412 ************************************************************ consensus_6627#0 GTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTG 480 consensus_6627#1 GTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGG-TGGAGTTTG 471 ************************************************** ********* consensus_6627#0 TATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAA 540 consensus_6627#1 TATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAA 531 ************************************************************ consensus_6627#0 GATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTG------------------- 581 consensus_6627#1 GATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTC 591 ***************************************** consensus_6627#0 --TGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTT 639 consensus_6627#1 AGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTT 651 ********************************************************** consensus_6627#0 CTGTGCCCGGCGCTTCCGCCGCCAGCACAAGAAGGCGGGCCACGAAGCGTCCTCGCTGCC 699 consensus_6627#1 CTGTGCCCGGCGCTTCCGCCGCC------------------------------------- 674 *********************** consensus_6627#0 GTTCCAGCCACCGCGGCCACCGAAAGCGGTCCGCTCGCCGAGCGGCCAGCCGCCCCAGTA 759 consensus_6627#1 ------------------------------------------------------------ consensus_6627#0 TCTGAAGAAATCACCGTCGCCGACCAGCATCAAGCCGCTGCCGGGCCACCTGCCCGCCCA 819 consensus_6627#1 ------------------------------------------------------------ consensus_6627#0 GTCACCGACCGACCAGACGACGGCCGCCGGCGGAACGACCGCAGCAGCGACGACGACCAC 879 consensus_6627#1 ------------------------------------------------------------ consensus_6627#0 GCTGGCCACGACCACCACCACCACCAGCATCGTGCCACCGACCAAGTACACCGAGGAGAA 939 consensus_6627#1 ------------------------------------------------------------ consensus_6627#0 CGAACTGATACCGAAGAATGCGCAGCTGGAACCGAAATCACCGGACGTGTCGGAGCTGGG 999 consensus_6627#1 ------------------------------------------------------------ consensus_6627#0 CGATCCGAGCTCGTGCGAGAACGGGGACGGCACCGAGCACGGCAAGCTCGGTACGATCGT 1059 consensus_6627#1 ------------------------------------------------------------ consensus_6627#0 GTTCAAGCTACGCTTTCTGGCCGACCGG 1087 consensus_6627#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||