These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence [AGAATCGGCACCAGGTGCTGGCGAGTGCGGTACATTAGAGCTCGAGCGACCAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGGCCAATCCGGATCCCGCACCGGAAACCGGCACCCCAACCAAAAGACAGACATCGAGGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCATTACCCTAGTCAACTCGGAGGATCAGGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTACCAAGAAGTCTCTCAGATCACGACTAACGAGAAACGCCAACACGCTCGAGGGGCTCGATCTGGGCCGGCCTGAGGCGACACAGCTGAATGCGATCCNGGGTAGCCCGCGCCACCGGNGAAGAGAAGGCGGCCTCNTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGCTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGCAACAAGAGATTCCTGTCTTTCGGAGGTAGCAGCGGCGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTCTTGTCTCGGGCAGCTCCGGCACGGAACNGAGCGACGAGAAGGCTCACTCCCCGGACGACCACGACCTCGGCAAGGGAGACGGCTACACCGAGGGCATTCCCGGACCGGTGACGCGCCTGTTCGTGCTGGCCAACCGTGGTCTCTCCAACCTGATCCAGGATCTGATTCTGCGAATCGCACAAACCAGTGAACGAGTGGTTAACTTTAAAGCACGCCTAATTACGTCACTCATCTAAGATGGTTTCCAAGTGTGTGTGGGTGGTTGTGTTAGCGGATGGCCAAAACGGGGAGAAGGATCTACCATTCTTCAGCGTCCACAATTGCCTTCCCGACTCCTGTTCACCGACACTTACTCCCTACTAGCTCCTCTTCATCCTAGCTCCTTTTCGTGACCTGATCA] [+] EMBL BX468756 [AGAATCGGCACCAGGTGCTGGCGAGTGCGGTACATTAGAGCTCGAGCGACCAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGGCCAATCCGGATCCCGCACCGGAAACCGGCACCCCAACCAAAAGACAGACATCGAGGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCATTACCCTAGTCAACTCGGAGGATCAGGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTACCAAGAAGTCTCTCAGATCACGACTAACGAGAAACGCCAACACGCTCGAGGGGCTCGATCTGGGCCGGCCTGAGGCGACACAGCTGAATGCGATCCNGGGTAGC ] [+] EMBL BX628892 [ GGCATCCTGCGGGAGCTCTTCCCAACAA TCTCTCAGATCACGACTAACGAG AACGCCAACACGCTCGAGGGGCTCGATCT GGCCGGCCTGA GCGACAC GCTGAATGCGATCC GGGTAGCCCGCGCCACCGGNGAAGAGAAGGCGGCCTCNTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGCTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGCAACAAGAGATTCCTGTCTTTCGGAGGTAGCAGCGGCGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTCTTGTCTCGGGCAGCTCCGGCACGGAACNGAGCGACGAGAAGGCTCACTCCCCGGACGACCACGACCTCGGCAAGGGAGACGGCTACACCGAGGGCATTCCCGGACCGGTGACGCGCCTGTTCGTGCTGGCCAACCGTGGTCTCTCCAACCTGATCCAGGATCTGATTCTGCGAATCGCACAAACCAGTGAACGAGTGGTTAACTTTAAAGCACGCCTAATTACGTCACTCATCTAAGATGGTTTCCAAGTGTGTGTGGGTGGTTGTGTTAGCGGATGGCCAAAACGGGGAGAAGGATCTACCATTCTTCAGCGTCCACAATTGCCTTCCCGACTCCTGTTCACCGACACTTACTCCCTACTAGCTCCTCTTCATCCTAGCTCCTTTTCGTGACCTGATCA] consensusID : consensus_6636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [CGAGGCAAGAATCGGCACGNTNNGACGAACTAAAACACTCAACCGTCTAAAAAAAACAACTCCCCCTCACCCATAATACTCACCATCATTGGGCATGAAACTGTTGTACGGCGCTGTATCTCCTTCCTTGGTCCTCATCCAACAACCAACAACAAACCAAACAAATGTAAAACACACTCCCACCACACCGAACGTTCACGTCCGCCGCCTTGTGACACTCTGCGTGCGACTTGTGCGAATCACGGCAGATCACGACTAACGAGAACGCCAACACGCTCGAGGGGCTCGATCTGGCCGGCCTGAGCGACACGCTGAATGCGATCCGGGTAGCCCGCGCCACCGGCGAAGAGAAGGCGGCTCGTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGNTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGNAACAAGAGATTCCTGTCTTTCGGAGGTAGCAAGCGGACGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTGTAAGTACTCGCGTGGTAAAGTCTTTAGGTATTGGAGTACTCCGTACCGTAAACGCGTACGATGTACGTCCATCCGACGGAGTCTACATCCGTNGCCACTGTATAAACACTTGGACACCGATGAACCCGGTGACACTTGCACTTACGCAAACCANAGCNACAATGTCACGCTGGGAATGATGGTAGNTACCCAAAGCGNCAAAGCGAAGGATGANAACCACAAGGGGCNAAA] [+] EMBL BX467148 [CGAGGCAAGAATCGGCACGNTNNGACGAACTAAAACACTCAACCGTCTAAAAAAAACAACTCCCCCTCACCCATAATACTCACCATCATTGGGCATGAAACTGTTGTACGGCGCTGTATCTCCTTCCTTGGTCCTCATCCAACAACCAACAACAAACCAAACAAATGTAAAACACACTCCCACCACACCGAACGTTCACGTCCGCCGCCTTGTGACACTCTGCGTGCGACTTGTGCGAATCACGGCAGATCACGACTAACGAGAACGCCAACACGCTCGAGGGGCTCGATCTGGCCGGCCTGAGCGACACGCTGAATGCGATCCGGGTAGCCCGCGCCACCGGCGAAGAGAAGGCGGCTCGTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGNTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGNAACAAGAGATTCCTGTCTTTCGGAGGTAGCAAGCGGACGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTGTAAGTACTCGCGTGGTAAAGTCTTTAGGTATTGGAGTACTCCGTACCGTAAACGCGTACGATGTACGTCCATCCGACGGAGTCTACATCCGTNGCCACTGTATAAACACTTGGACACCGATGAACCCGGTGACACTTGCACTTACGCAAACCANAGCNACAATGTCACGCTGGGAATGATGGTAGNTACCCAAAGCGNCAAAGCGAAGGATGANAACCACAAGGGGCNAAA] consensusID : consensus_6636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence [GATTGCGCCGAGGTGTTGGCGAGTGCGGTACATTAGAGCTCGAGCGA-CAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGG-CAATCCGGATCCCGCACCGGAACCGG-ACCCCAA-CAAAGACAGACATCGAGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCA-TTACCCTAGTCAACTCGGAGGATCAGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTCCCAACAATCTCTCAGATTCTGGACCAAAAGATACAGATGATCACGTCCTACCTGTTCCGCACGATCGGCCCGATACTGTTGCGCAGCGGGCTCGGCCTGAGCGGCGGCACCGGCGGCGGGAACAACAATGGT] [+] EMBL AL697165 [GATTGCGCCGAGGTGTTGGCGAGTGCGGTACATTAGAGCTCGAGCGA CAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGG CAATCCGGATCCCGCACCGGAACCGG ACCCCAA CAAAGACAGACATCGAGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCA TTACCCTAGTCAACTCGGAGGATCAGAAAATCAACGAACGCAAC ] [+] EMBL BM596711 [ ccgCGACGTGCTGGCGAGTGCGGTACATTAGAGCTCGAGCGACCAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGGCCAATCCGGATCCCGCACCGGAACCGGCACCCCAACCAAAGACAGACATCGAGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCATTTACCCTAGTCAACTCGGAGGATCAGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTCCCAACAATCTCTCAGATTCTGGACCAAAAGATACAGATGATCACGTCCTACCTGTTCCGCACGATCGGCCCGATACTGTTGCGCAGCGGGCTCGGCCTGAGCGGCGGCACCGGCGGCGGGAACAACAATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6636#0 ------------------------------------------------------------ consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 CGAGGCAAGAATCGGCACGNTNNGACGAACTAAAACACTCAACCGTCTAAAAAAAACAAC 60 consensus_6636#0 ------------------------AGAATCGGCAC--CAGGTGCTGGCGAGTGCGGTA-- 32 consensus_6636#2 --------------------------GATTGCGCC--GAGGTGTTGGCGAGTGCGGTA-- 30 consensus_6636#1 TCCCCCTCACCCATAATACTCACCATCATTGGGCATGAAACTGTTGTACGGCGCTGTATC 120 ** * * ** ** * ** *** consensus_6636#0 -----CATTAGAGCTCG---AGCGACCAGCAGCAAAATCGGCAG-------------CCC 71 consensus_6636#2 -----CATTAGAGCTCG---AGCGAC-AGCAGCAAAATCGGCAG-------------CCC 68 consensus_6636#1 TCCTTCCTTGGTCCTCATCCAACAACCAACAACAAACCAAACAAATGTAAAACACACTCC 180 * ** * *** * * ** * ** **** ** ** consensus_6636#0 GACCAAACC---------CGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAAC 122 consensus_6636#2 GACCAAACC---------CGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAAC 119 consensus_6636#1 CACCACACCGAACGTTCACGTCCGCCGCCTTGTGACACTCTGCGTGCGACTTGTGCGAAT 240 **** *** ****** * * * **** * ** consensus_6636#0 AAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTT 182 consensus_6636#2 AAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTT 179 consensus_6636#1 CACGGCAGATCAC-GACTAACGAGAACGCCAACACGCTCGAGGGGCTCGATCTGGCCGGC 299 * * ***** *** ** * * * *** *** * * **** * consensus_6636#0 ACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGC 242 consensus_6636#2 ACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGC 239 consensus_6636#1 CTGAGCGACA--CGCTGAATGCGAT-CCGGGTAGCCCGCGCCACCGGCGAAGAGAA-GGC 355 ** *** * ***** * * * ** ** * * * * * *** consensus_6636#0 GGCCAATCCGGATCCCGCACCGGAAACCGGCACCCCAACCAAAAGACAGACATCGAGGCT 302 consensus_6636#2 GGC-AATCCGGATCCCGCACCGGAA-CCGG-ACCCCAAC--AAAGACAGACATCGAG-CT 293 consensus_6636#1 GGCTCGTCCAACGACCAGAACGCAG-CCGAATCGTCCGCCAACAGNTCCAGCCTGGACGA 414 *** *** ** * ** * *** * * * * ** * * consensus_6636#0 GATGAAGATCCCACTCGACGG---CGATAAGGAGCTGGACGTCATTACCCTAGTCAACTC 359 consensus_6636#2 GATGAAGATCCCACTCGACGG---CGATAAGGAGCTGGACGTCATTACCCTAGTCAACTC 350 consensus_6636#1 GCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGNAACAAGAG-ATTCCTGTCTTTCG 473 * *** * * *** ** **** * ** * ** * * * *** consensus_6636#0 GGAGGATCAGGAAAAT--CAACGAACGCAACAAACGTACCATTGGCATC--CTGCGGGAG 415 consensus_6636#2 GGAGGATCAG-AAAAT--CAACGAACGCAACAAACGTACCATTGGCATC--CTGCGGGAG 405 consensus_6636#1 GAGGTAGCAAGCGGACGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTGTAAG 533 * * * ** * * ** * *** * * *** * * * ** consensus_6636#0 CTCTTAC-CAAGAAGTCTCTCAGATCACGAC-TAACGAGAAACGCCAACACGCTCGAGGG 473 consensus_6636#2 CTCTTCC-CAACAA-TCTCTCAGATTCTGG---ACCAAAAGATACAGATGATCACGTCCT 460 consensus_6636#1 TACTCGCGTGGTAAAGTCTTTAGGTATTGGAGTACTCCGTACCGTAAACGCGTACGATGT 593 ** * ** * ** * * * * ** consensus_6636#0 GCTCGATCTGGGCCGGCCTGAG--GCGACACAGCTGAAT-GCGATCCNGGG-----TAGC 525 consensus_6636#2 ACCTGTTCCGCAC--GATCGGC--CCGATACTGTTGCGCAGCGGGCTCGGCC----TGAG 512 consensus_6636#1 ACGTCCATCCGACGGAGTCTACATCCGTNGCCACTGTATAAACACTTGGACACCGATGAA 653 * * ** * ** * * consensus_6636#0 C--CGCGCCACCGGNGAAGA-GAAGGCGGCCTCNTCCAACGACCAGAACGCAGCCGAATC 582 consensus_6636#2 C--GGCGGCACCGGCGGCGG-GAA--CAACAATGGT------------------------ 543 consensus_6636#1 CCCGGTGACACTTGCACTTACGCAAACCANAGCNACAATGTCACGCTGGGAATGATGGTA 713 * * * *** * * * * consensus_6636#0 GTCCGCCAACAGCTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGA 642 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 GNTACCCAAAGCGNCAAAGCGAAGGATGANAACCACAAGGGGCNAAA------------- 760 consensus_6636#0 TCGCAACAAGAGATTCCTGTCTTTCGGAGGTAGCAGCGGCGGCGGCGGTTCCGGCAACTT 702 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 CCTGTTCGATATCATCCGTCTTGTCTCGGGCAGCTCCGGCACGGAACNGAGCGACGAGAA 762 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 GGCTCACTCCCCGGACGACCACGACCTCGGCAAGGGAGACGGCTACACCGAGGGCATTCC 822 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 CGGACCGGTGACGCGCCTGTTCGTGCTGGCCAACCGTGGTCTCTCCAACCTGATCCAGGA 882 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 TCTGATTCTGCGAATCGCACAAACCAGTGAACGAGTGGTTAACTTTAAAGCACGCCTAAT 942 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 TACGTCACTCATCTAAGATGGTTTCCAAGTGTGTGTGGGTGGTTGTGTTAGCGGATGGCC 1002 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 AAAACGGGGAGAAGGATCTACCATTCTTCAGCGTCCACAATTGCCTTCCCGACTCCTGTT 1062 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ consensus_6636#0 CACCGACACTTACTCCCTACTAGCTCCTCTTCATCCTAGCTCCTTTTCGTGACCTGATCA 1122 consensus_6636#2 ------------------------------------------------------------ consensus_6636#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||