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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence
[AGAATCGGCACCAGGTGCTGGCGAGTGCGGTACATTAGAGCTCGAGCGACCAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGGCCAATCCGGATCCCGCACCGGAAACCGGCACCCCAACCAAAAGACAGACATCGAGGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCATTACCCTAGTCAACTCGGAGGATCAGGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTACCAAGAAGTCTCTCAGATCACGACTAACGAGAAACGCCAACACGCTCGAGGGGCTCGATCTGGGCCGGCCTGAGGCGACACAGCTGAATGCGATCCNGGGTAGCCCGCGCCACCGGNGAAGAGAAGGCGGCCTCNTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGCTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGCAACAAGAGATTCCTGTCTTTCGGAGGTAGCAGCGGCGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTCTTGTCTCGGGCAGCTCCGGCACGGAACNGAGCGACGAGAAGGCTCACTCCCCGGACGACCACGACCTCGGCAAGGGAGACGGCTACACCGAGGGCATTCCCGGACCGGTGACGCGCCTGTTCGTGCTGGCCAACCGTGGTCTCTCCAACCTGATCCAGGATCTGATTCTGCGAATCGCACAAACCAGTGAACGAGTGGTTAACTTTAAAGCACGCCTAATTACGTCACTCATCTAAGATGGTTTCCAAGTGTGTGTGGGTGGTTGTGTTAGCGGATGGCCAAAACGGGGAGAAGGATCTACCATTCTTCAGCGTCCACAATTGCCTTCCCGACTCCTGTTCACCGACACTTACTCCCTACTAGCTCCTCTTCATCCTAGCTCCTTTTCGTGACCTGATCA]
[+] EMBL BX468756 [AGAATCGGCACCAGGTGCTGGCGAGTGCGGTACATTAGAGCTCGAGCGACCAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGGCCAATCCGGATCCCGCACCGGAAACCGGCACCCCAACCAAAAGACAGACATCGAGGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCATTACCCTAGTCAACTCGGAGGATCAGGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTACCAAGAAGTCTCTCAGATCACGACTAACGAGAAACGCCAACACGCTCGAGGGGCTCGATCTGGGCCGGCCTGAGGCGACACAGCTGAATGCGATCCNGGGTAGC ]
[+] EMBL BX628892 [ GGCATCCTGCGGGAGCTCTTCCCAACAA TCTCTCAGATCACGACTAACGAG AACGCCAACACGCTCGAGGGGCTCGATCT GGCCGGCCTGA GCGACAC GCTGAATGCGATCC GGGTAGCCCGCGCCACCGGNGAAGAGAAGGCGGCCTCNTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGCTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGCAACAAGAGATTCCTGTCTTTCGGAGGTAGCAGCGGCGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTCTTGTCTCGGGCAGCTCCGGCACGGAACNGAGCGACGAGAAGGCTCACTCCCCGGACGACCACGACCTCGGCAAGGGAGACGGCTACACCGAGGGCATTCCCGGACCGGTGACGCGCCTGTTCGTGCTGGCCAACCGTGGTCTCTCCAACCTGATCCAGGATCTGATTCTGCGAATCGCACAAACCAGTGAACGAGTGGTTAACTTTAAAGCACGCCTAATTACGTCACTCATCTAAGATGGTTTCCAAGTGTGTGTGGGTGGTTGTGTTAGCGGATGGCCAAAACGGGGAGAAGGATCTACCATTCTTCAGCGTCCACAATTGCCTTCCCGACTCCTGTTCACCGACACTTACTCCCTACTAGCTCCTCTTCATCCTAGCTCCTTTTCGTGACCTGATCA]
consensusID : consensus_6636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[CGAGGCAAGAATCGGCACGNTNNGACGAACTAAAACACTCAACCGTCTAAAAAAAACAACTCCCCCTCACCCATAATACTCACCATCATTGGGCATGAAACTGTTGTACGGCGCTGTATCTCCTTCCTTGGTCCTCATCCAACAACCAACAACAAACCAAACAAATGTAAAACACACTCCCACCACACCGAACGTTCACGTCCGCCGCCTTGTGACACTCTGCGTGCGACTTGTGCGAATCACGGCAGATCACGACTAACGAGAACGCCAACACGCTCGAGGGGCTCGATCTGGCCGGCCTGAGCGACACGCTGAATGCGATCCGGGTAGCCCGCGCCACCGGCGAAGAGAAGGCGGCTCGTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGNTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGNAACAAGAGATTCCTGTCTTTCGGAGGTAGCAAGCGGACGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTGTAAGTACTCGCGTGGTAAAGTCTTTAGGTATTGGAGTACTCCGTACCGTAAACGCGTACGATGTACGTCCATCCGACGGAGTCTACATCCGTNGCCACTGTATAAACACTTGGACACCGATGAACCCGGTGACACTTGCACTTACGCAAACCANAGCNACAATGTCACGCTGGGAATGATGGTAGNTACCCAAAGCGNCAAAGCGAAGGATGANAACCACAAGGGGCNAAA]
[+] EMBL BX467148 [CGAGGCAAGAATCGGCACGNTNNGACGAACTAAAACACTCAACCGTCTAAAAAAAACAACTCCCCCTCACCCATAATACTCACCATCATTGGGCATGAAACTGTTGTACGGCGCTGTATCTCCTTCCTTGGTCCTCATCCAACAACCAACAACAAACCAAACAAATGTAAAACACACTCCCACCACACCGAACGTTCACGTCCGCCGCCTTGTGACACTCTGCGTGCGACTTGTGCGAATCACGGCAGATCACGACTAACGAGAACGCCAACACGCTCGAGGGGCTCGATCTGGCCGGCCTGAGCGACACGCTGAATGCGATCCGGGTAGCCCGCGCCACCGGCGAAGAGAAGGCGGCTCGTCCAACGACCAGAACGCAGCCGAATCGTCCGCCAACAGNTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGNAACAAGAGATTCCTGTCTTTCGGAGGTAGCAAGCGGACGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTGTAAGTACTCGCGTGGTAAAGTCTTTAGGTATTGGAGTACTCCGTACCGTAAACGCGTACGATGTACGTCCATCCGACGGAGTCTACATCCGTNGCCACTGTATAAACACTTGGACACCGATGAACCCGGTGACACTTGCACTTACGCAAACCANAGCNACAATGTCACGCTGGGAATGATGGTAGNTACCCAAAGCGNCAAAGCGAAGGATGANAACCACAAGGGGCNAAA]
consensusID : consensus_6636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence
[GATTGCGCCGAGGTGTTGGCGAGTGCGGTACATTAGAGCTCGAGCGA-CAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGG-CAATCCGGATCCCGCACCGGAACCGG-ACCCCAA-CAAAGACAGACATCGAGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCA-TTACCCTAGTCAACTCGGAGGATCAGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTCCCAACAATCTCTCAGATTCTGGACCAAAAGATACAGATGATCACGTCCTACCTGTTCCGCACGATCGGCCCGATACTGTTGCGCAGCGGGCTCGGCCTGAGCGGCGGCACCGGCGGCGGGAACAACAATGGT]
[+] EMBL AL697165 [GATTGCGCCGAGGTGTTGGCGAGTGCGGTACATTAGAGCTCGAGCGA CAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGG CAATCCGGATCCCGCACCGGAACCGG ACCCCAA CAAAGACAGACATCGAGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCA TTACCCTAGTCAACTCGGAGGATCAGAAAATCAACGAACGCAAC ]
[+] EMBL BM596711 [ ccgCGACGTGCTGGCGAGTGCGGTACATTAGAGCTCGAGCGACCAGCAGCAAAATCGGCAGCCCGACCAAACCCGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAACAAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTTACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGCGGCCAATCCGGATCCCGCACCGGAACCGGCACCCCAACCAAAGACAGACATCGAGCTGATGAAGATCCCACTCGACGGCGATAAGGAGCTGGACGTCATTTACCCTAGTCAACTCGGAGGATCAGAAAATCAACGAACGCAACAAACGTACCATTGGCATCCTGCGGGAGCTCTTCCCAACAATCTCTCAGATTCTGGACCAAAAGATACAGATGATCACGTCCTACCTGTTCCGCACGATCGGCCCGATACTGTTGCGCAGCGGGCTCGGCCTGAGCGGCGGCACCGGCGGCGGGAACAACAATGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6636#0 ------------------------------------------------------------
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 CGAGGCAAGAATCGGCACGNTNNGACGAACTAAAACACTCAACCGTCTAAAAAAAACAAC 60
consensus_6636#0 ------------------------AGAATCGGCAC--CAGGTGCTGGCGAGTGCGGTA-- 32
consensus_6636#2 --------------------------GATTGCGCC--GAGGTGTTGGCGAGTGCGGTA-- 30
consensus_6636#1 TCCCCCTCACCCATAATACTCACCATCATTGGGCATGAAACTGTTGTACGGCGCTGTATC 120
** * * ** ** * ** ***
consensus_6636#0 -----CATTAGAGCTCG---AGCGACCAGCAGCAAAATCGGCAG-------------CCC 71
consensus_6636#2 -----CATTAGAGCTCG---AGCGAC-AGCAGCAAAATCGGCAG-------------CCC 68
consensus_6636#1 TCCTTCCTTGGTCCTCATCCAACAACCAACAACAAACCAAACAAATGTAAAACACACTCC 180
* ** * *** * * ** * ** **** ** **
consensus_6636#0 GACCAAACC---------CGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAAC 122
consensus_6636#2 GACCAAACC---------CGTCCGTCCCGAAATAACACAACAACAACAGAAGAAAAAAAC 119
consensus_6636#1 CACCACACCGAACGTTCACGTCCGCCGCCTTGTGACACTCTGCGTGCGACTTGTGCGAAT 240
**** *** ****** * * * **** * **
consensus_6636#0 AAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTT 182
consensus_6636#2 AAAAGGCAATCACAGACAAAAAAAAGCACCACCACTACCACCAGCAGCGATGAAGTTCTT 179
consensus_6636#1 CACGGCAGATCAC-GACTAACGAGAACGCCAACACGCTCGAGGGGCTCGATCTGGCCGGC 299
* * ***** *** ** * * * *** *** * * **** *
consensus_6636#0 ACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGC 242
consensus_6636#2 ACTAGTGACGGCTGTGATATGCGGTGCTCTGGCGCTGACGTTAGGTGTGCCGGTACCGGC 239
consensus_6636#1 CTGAGCGACA--CGCTGAATGCGAT-CCGGGTAGCCCGCGCCACCGGCGAAGAGAA-GGC 355
** *** * ***** * * * ** ** * * * * * ***
consensus_6636#0 GGCCAATCCGGATCCCGCACCGGAAACCGGCACCCCAACCAAAAGACAGACATCGAGGCT 302
consensus_6636#2 GGC-AATCCGGATCCCGCACCGGAA-CCGG-ACCCCAAC--AAAGACAGACATCGAG-CT 293
consensus_6636#1 GGCTCGTCCAACGACCAGAACGCAG-CCGAATCGTCCGCCAACAGNTCCAGCCTGGACGA 414
*** *** ** * ** * *** * * * * ** * *
consensus_6636#0 GATGAAGATCCCACTCGACGG---CGATAAGGAGCTGGACGTCATTACCCTAGTCAACTC 359
consensus_6636#2 GATGAAGATCCCACTCGACGG---CGATAAGGAGCTGGACGTCATTACCCTAGTCAACTC 350
consensus_6636#1 GCTGACGCTTGACTCCGAGGGTAACGATGAAGATCGNAACAAGAG-ATTCCTGTCTTTCG 473
* *** * * *** ** **** * ** * ** * * * ***
consensus_6636#0 GGAGGATCAGGAAAAT--CAACGAACGCAACAAACGTACCATTGGCATC--CTGCGGGAG 415
consensus_6636#2 GGAGGATCAG-AAAAT--CAACGAACGCAACAAACGTACCATTGGCATC--CTGCGGGAG 405
consensus_6636#1 GAGGTAGCAAGCGGACGGCGGCGGTTCCGGCAACTTCCTGTTCGATATCATCCGTGTAAG 533
* * * ** * * ** * *** * * *** * * * **
consensus_6636#0 CTCTTAC-CAAGAAGTCTCTCAGATCACGAC-TAACGAGAAACGCCAACACGCTCGAGGG 473
consensus_6636#2 CTCTTCC-CAACAA-TCTCTCAGATTCTGG---ACCAAAAGATACAGATGATCACGTCCT 460
consensus_6636#1 TACTCGCGTGGTAAAGTCTTTAGGTATTGGAGTACTCCGTACCGTAAACGCGTACGATGT 593
** * ** * ** * * * * **
consensus_6636#0 GCTCGATCTGGGCCGGCCTGAG--GCGACACAGCTGAAT-GCGATCCNGGG-----TAGC 525
consensus_6636#2 ACCTGTTCCGCAC--GATCGGC--CCGATACTGTTGCGCAGCGGGCTCGGCC----TGAG 512
consensus_6636#1 ACGTCCATCCGACGGAGTCTACATCCGTNGCCACTGTATAAACACTTGGACACCGATGAA 653
* * ** * ** * *
consensus_6636#0 C--CGCGCCACCGGNGAAGA-GAAGGCGGCCTCNTCCAACGACCAGAACGCAGCCGAATC 582
consensus_6636#2 C--GGCGGCACCGGCGGCGG-GAA--CAACAATGGT------------------------ 543
consensus_6636#1 CCCGGTGACACTTGCACTTACGCAAACCANAGCNACAATGTCACGCTGGGAATGATGGTA 713
* * * *** * * * *
consensus_6636#0 GTCCGCCAACAGCTCCAGCCTGGACGAGCTGACGCTTGACTCCGAGGGTAACGATGAAGA 642
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 GNTACCCAAAGCGNCAAAGCGAAGGATGANAACCACAAGGGGCNAAA------------- 760
consensus_6636#0 TCGCAACAAGAGATTCCTGTCTTTCGGAGGTAGCAGCGGCGGCGGCGGTTCCGGCAACTT 702
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 CCTGTTCGATATCATCCGTCTTGTCTCGGGCAGCTCCGGCACGGAACNGAGCGACGAGAA 762
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 GGCTCACTCCCCGGACGACCACGACCTCGGCAAGGGAGACGGCTACACCGAGGGCATTCC 822
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 CGGACCGGTGACGCGCCTGTTCGTGCTGGCCAACCGTGGTCTCTCCAACCTGATCCAGGA 882
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 TCTGATTCTGCGAATCGCACAAACCAGTGAACGAGTGGTTAACTTTAAAGCACGCCTAAT 942
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 TACGTCACTCATCTAAGATGGTTTCCAAGTGTGTGTGGGTGGTTGTGTTAGCGGATGGCC 1002
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 AAAACGGGGAGAAGGATCTACCATTCTTCAGCGTCCACAATTGCCTTCCCGACTCCTGTT 1062
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
consensus_6636#0 CACCGACACTTACTCCCTACTAGCTCCTCTTCATCCTAGCTCCTTTTCGTGACCTGATCA 1122
consensus_6636#2 ------------------------------------------------------------
consensus_6636#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||