These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 948 fasta sequence [CCCCGAGGTTANAGCAGAGAAATAGAGAGAGANCAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATACCTTGTATGCAGCAGCAGCGTGCAAAAGGTGTGTGTGTGTGTGTNNCCAAAGTGCTTATTATTTATTGATCAGCACACTTTCACTCAGCTTCAGACAGCGTACCCGCTATTATTCTACAACGGTGCTGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTATATGCTAAACAGCGTTCATCAAAACTCGCAAAAGCATATTAAGCGCAATGCAATCNGGACCGGGGAGTGGTAGGTGTGAATNAAAANACAACAGATACNAATACTCTCGGTAACTGGGAGACAGATGGTCTTACCACATATACTTCCTACCTATATACTAATAACTACTATTACTANTACTACTACACGCTAANTACTTGTTACTCATTCTCAAAGGCACACATNCTCATGTAGCCGTGGCGTNNACCAGAGTTAAAGCGNCTNTCGCTTGATTACCACTCANNATTGNTCCCTACAAACAGGGGCCACACACAACTCACACAGCGGANAACCCCAANACGCACTANTAACAACCCGGCACCGACGTACTNTTGGTAGACCCAGCCAACAAACGACAATAACCTACATTAATTAACCAACGGACACAACGAAAACGCAACCAACGGTACCAGGGGANTTATTGTCGGTTAACACATTTNAACGACACTTCACGGTTAATACCTGAANAAGAGTACACCACGAACGCGNTTCACNGCCTAGTNNCATACTTCATANAACCGGCTCCCAANCCTCATACCCACANCGGCAATCCTACANGCCGNCCNCACNCAGCNAA] [+] EMBL AL931643 [CCCCGAGGTTANAGCAGAGAAATAGAGAGAGANCAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATACCTTGTATGCAGCAGCAGCGTGCAAAAGGTGTGTGTGTGTGTGTNNCCAAAGTGCTTATTATTTATTGATCAGCACACTTTCACTCAGCTTCAGACAGCGTACCCGCTATTATTCTACAACGGTGCTGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTATATGCTAAACAGCGTTCATCAAAACTCGCAAAAGCATATTAAGCGCAATGCAATCNGGACCGGGGAGTGGTAGGTGTGAATNAAAANACAACAGATACNAATACTCTCGGTAACTGGGAGACAGATGGTCTTACCACATATACTTCCTACCTATATACTAATAACTACTATTACTANTACTACTACACGCTAANTACTTGTTACTCATTCTCAAAGGCACACATNCTCATGTAGCCGTGGCGTNNACCAGAGTTAAAGCGNCTNTCGCTTGATTACCACTCANNATTGNTCCCTACAAACAGGGGCCACACACAACTCACACAGCGGANAACCCCAANACGCACTANTAACAACCCGGCACCGACGTACTNTTGGTAGACCCAGCCAACAAACGACAATAACCTACATTAATTAACCAACGGACACAACGAAAACGCAACCAACGGTACCAGGGGANTTATTGTCGGTTAACACATTTNAACGACACTTCACGGTTAATACCTGAANAAGAGTACACCACGAACGCGNTTCACNGCCTAGTNNCATACTTCATANAACCGGCTCCCAANCCTCATACCCACANCGGCAATCCTACANGCCGNCCNCACNCAGCNAA] consensusID : consensus_6644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence [TCCCCCCGAGG----NATA-ATAGAGCAGAGAAATAGAGAGAGAAAAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAAT-ATTAT-CCTTG-TTGCA-GCAGCA-GCGTGC-AAAAGGTGT--GTGTGTGTGTGTTCC--AAAGTGC-TTTTATTTATTG-AAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACAT-CTTTGAACGCGCACAGAAGC-GTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGGGGGGAACGAAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTATTACTACTACTACTACAGCTAATACTGTTTCTCATTCTCAAAGCACACATCTCATGTAGCGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCATTATGTTCTAAAAGGCACATCACTACGCGATCCAAATATACACCGACGATATTGTACACACAACATACTTATATACACGCAAAAAGACACGTAAAGGATTGTGTTACATTACATCGTTTATCGAAACG] [+] EMBL AL932539 [TCCCCCCGAGG NATA ATAGAGCAGAGAAATAGAGAGAGAAAAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAATAATTATCCCTTGTTTGCAGGCAGCAGGCGTGCAAAAAGGTGTTGGTGTGTGT TGTTCCAAAAAGTGCTTTTTATTTATTGAAAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACATCCTTTGAACGCGCACAGAAGCGGTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGT ] [+] EMBL AL930801 [ CCCCCCGAGGTTAACATAGATTGAGCAGAGAAATAGAGAGAGAAAAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAAT ATTAT CCTTG TTGCA GCAGCA GCGTGC AAAAGGTGT GTGTGTGTGTGTTCC AAAGTGC TTTTATTTATTG AAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACAT CTTTGAACGCGCACAGAAGC GTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGGGGGGAACGAAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTAC ] [+] EMBL BX625301 [ ATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAAT ATTAT CCTTG TTGCA GCAGCA GCGTGC AAAAGGTGT GTGTGTGTGTGTTCC AAAGTGC TTTTATTTATTG AAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACAT CTTTGAACGCGCACAGAAGC GTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGGGGGGAA GAAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTATTACTACTACTACTACAGCTAATACTGTTTCTCATTCTCAAAGCACACATCTCATGTAGCGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCATTATGTTCTAAAAGGCACATCACTACGCGATCCAAATATACACCGACGATATTGTACACACAACATACTTATATACACGCAAAAAGACACGTAAAGGATTGTGTTACATTACATCGTTTATCGAAACG] consensusID : consensus_6644#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [AGATCGGCCGAGGGTGNCAGAGAAATAGAGAGAGAAAAAACCGGGGAAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGCTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATCCTTGTTGCAGCAGCAGCGTGCAAAAGATGTGTGTGTGTGTGTGTTCCAAAGTGCTTTTATTTATTGAAAGCACACTTTCACTCAGCTTCAGCAGCGTATCCGCTTTATGCTACAACGTAAGCGTAAGATTTAAAACATCTTTTAACGCGCACAGAAGCGTCCACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGAAGAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTACTACAACTACTACTACAGTTCAATACTATTTCTCATTCTCAAAGCACACATCTCATGTACGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCGTGTATGTTCTAAAAGGCACATCACAAAGCGATCCAAATATACACCGACGATTTGTACACACAAATACTTATATACACGGCC] [+] EMBL BX466297 [AGATCGGCCGAGGGTGNCAGAGAAATAGAGAGAGAAAAAACCGGGGAAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGCTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATCCTTGTTGCAGCAGCAGCGTGCAAAAGATGTGTGTGTGTGTGTGTTCCAAAGTGCTTTTATTTATTGAAAGCACACTTTCACTCAGCTTCAGCAGCGTATCCGCTTTATGCTACAACGTAAGCGTAAGATTTAAAACATCTTTTAACGCGCACAGAAGCGTCCACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGAAGAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTACTACAACTACTACTACAGTTCAATACTATTTCTCATTCTCAAAGCACACATCTCATGTACGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCGTGTATGTTCTAAAAGGCACATCACAAAGCGATCCAAATATACACCGACGATTTGTACACACAAATACTTATATACACGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6644#1 TCCCCCCGAGGNATAATAGAGCAGAGAAATAGAGAGAGAAAAAAC---GGGAAATGAACA 57 consensus_6644#2 ----AGATCGGCCGAGGGTGNCAGAGAAATAGAGAGAGAAAAAACCGGGGAAAATGAACA 56 consensus_6644#0 ---CCCCGAGGT----TANAGCAGAGAAATAGAGAGAGANCAAAC---GGGAAATGAACA 50 ** ****************** **** ** ********* consensus_6644#1 GAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAA 117 consensus_6644#2 GAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGCTTAGAGTAGTGAACAAAAATCAA 116 consensus_6644#0 GAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAA 110 ************************************ *********************** consensus_6644#1 AAGAAATATTAT-CCTTGT-TGCAGCAGCAGCGTGCAAAAG--GTGTGTGTGTGTGTGTT 173 consensus_6644#2 AAGAAATATTAT-CCTTGT-TGCAGCAGCAGCGTGCAAAAGATGTGTGTGTGTGTGTGTT 174 consensus_6644#0 AAGAAATATTATACCTTGTATGCAGCAGCAGCGTGCAAAAGGTGTGTGTGTGTGTGTNN- 169 ************ ****** ********************* ************** consensus_6644#1 CCAAAGTGCTT-TTATTTATTGAA-AGCACACTTTCACTCAGCTTCAG-CAGCGTACCCG 230 consensus_6644#2 CCAAAGTGCTT-TTATTTATTGAA-AGCACACTTTCACTCAGCTTCAG-CAGCGTATCCG 231 consensus_6644#0 CCAAAGTGCTTATTATTTATTGATCAGCACACTTTCACTCAGCTTCAGACAGCGTACCCG 229 *********** *********** *********************** ******* *** consensus_6644#1 CT-TTATTCTACAACG-GTGCGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTC 288 consensus_6644#2 CT-TTATGCTACAACGTAAGCGTAAGATTTAAAACATCTTTTAACGCGCACAGAAGCGTC 290 consensus_6644#0 CTATTATTCTACAACGGTGCTGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTC 289 ** **** ******** ******************** ****************** consensus_6644#1 TACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCT-TATGCTAAACAGCGTT- 346 consensus_6644#2 CACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCT-TATGCTAAACAGCGTT- 348 consensus_6644#0 TACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTATATGCTAAACAGCGTTC 349 ***************************************** **************** consensus_6644#1 ATCAAAACTCGCAAAAGCAT-TTAAGCG-AATGCAATCGG-ACCGGGGGG-----GGGGG 398 consensus_6644#2 ATCAAAACTCGCAAAAGCAT-TTAAGCG-AATGCAATCGG-ACCGGGGGG-----GAAG- 399 consensus_6644#0 ATCAAAACTCGCAAAAGCATATTAAGCGCAATGCAATCNGGACCGGGGAGTGGTAGGTGT 409 ******************** ******* ********* * ******* * * * consensus_6644#1 GAACGAAAAAACAACAGATACGAATACTCTCG-TAACTGGAAC---GATGGTTT--CCA- 451 consensus_6644#2 ------AAAAACAACAGATACGAATACTCTCG-TAACTGGAAC---GATGGTTT--CCA- 446 consensus_6644#0 GAATNAAAANACAACAGATACNAATACTCTCGGTAACTGGGAGACAGATGGTCTTACCAC 469 *** *********** ********** ******* * ****** * *** consensus_6644#1 --ATATCCTCCTCCTAT-TACTACTA-CTACTATTACTACTACTACTACA-GCT-AATAC 505 consensus_6644#2 --ATATCCTCCTCCTAT-TACTACTA-CTACTACTACAACTACTACTACA-GTTCAATAC 501 consensus_6644#0 ATATACTTCCTACCTATATACTAATAACTACTATTACTANTACTACTACACGCTAANTAC 529 *** * ***** ***** ** ****** *** * ********** * * * *** consensus_6644#1 T-GTTTCTCATTCTCAAAG-CACACATC-TCATGTAG-CGTGGCGTAA--CAG-GTTAAG 558 consensus_6644#2 T-ATTTCTCATTCTCAAAG-CACACATC-TCATGTA--CGTGGCGTAA--CAG-GTTAAG 553 consensus_6644#0 TTGTTACTCATTCTCAAAGGCACACATNCTCATGTAGCCGTGGCGTNNACCAGAGTTAAA 589 * ** ************* ******* ******* ******** *** ***** consensus_6644#1 CGCTTTCGTGATTCAT-TATGTTCTAAAAGGCACATCACTAC-----GCGATCCA-AATA 611 consensus_6644#2 CGCTTTCGTGATTCGTGTATGTTCTAAAAGGCACATCACAAA-----GCGATCCA-AATA 607 consensus_6644#0 GCGNCTNTCGCTTGATTACCACTCANNATTGNTCCCTACAAACAGGGGCCACACACAACT 649 * * ** * ** * * * ** * ** * ** ** consensus_6644#1 TACACCGACGATATTGTACACACAACATACTTATATAC--ACGCAAAAAGACACGTAAAG 669 consensus_6644#2 TACACCGACGAT-TTGTACACACAA-ATACTTATATAC--ACGGCC-------------- 649 consensus_6644#0 CACACAGCGGANAACCCCAANACGCACTANTAACAACCCGGCACCGACGTACTNTTGGTA 709 **** * ** * ** ** * * * * * consensus_6644#1 GATTGTGTTACATTACATCGTTTATCGAAACG---------------------------- 701 consensus_6644#2 ------------------------------------------------------------ consensus_6644#0 GACCCAGCCAACAAACGACAATAACCTACATTAATTAACCAACGGACACAACGAAAACGC 769 consensus_6644#1 ------------------------------------------------------------ consensus_6644#2 ------------------------------------------------------------ consensus_6644#0 AACCAACGGTACCAGGGGANTTATTGTCGGTTAACACATTTNAACGACACTTCACGGTTA 829 consensus_6644#1 ------------------------------------------------------------ consensus_6644#2 ------------------------------------------------------------ consensus_6644#0 ATACCTGAANAAGAGTACACCACGAACGCGNTTCACNGCCTAGTNNCATACTTCATANAA 889 consensus_6644#1 ----------------------------------------------------------- consensus_6644#2 ----------------------------------------------------------- consensus_6644#0 CCGGCTCCCAANCCTCATACCCACANCGGCAATCCTACANGCCGNCCNCACNCAGCNAA 948 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||