These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 924 fasta sequence [CAGAATCCCCCCGAGGTTTGGTAGCTGGTTAGCCATCGTCTTCCTGCTCGTTTGGCAAGCAGAATGAGATGGTTGTGTGCTGCACGGCTGAGAATATGTTACGAGACGAGGAACATCGTGAGCAACTATCTGCAAGCGATCGAAGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAACAGTATATCCCAGGATAACGTTACAGTTGTGTNGGGCAATAGTACGCAGCAAACTATCGCCTATTTCAGCGAACATTCATTGCACCCGGAATACAGCAACGTATCGACACGAGTCTCTCAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCCAACAATGAANACTATCCCTGGCATGTNCTATGGCATAATCAGACACAATACACCTTTGAGATTNGGCAGGAGCGTGTACATTGCANGGANAAAGAANACAGTAAAAGCATCATCAGAACGGTTATCCACTGTACAACGAGGCATTGCCTTGCAGCAATGGATCCCAGGNTTCTAATGTGACTGGCCTGCCAGCTCAGTGTCGTGGAGCACGACAGAAAGTACTATCNAGCCGTACTGTATTCGTTCCAAGAGGATTGCCGGCCAAAATGTACTAGGTAAACCCATTANTTGCACAGGGAGTCCAACGAATATCAAGTGACCTATCTGGTGNGGACATGTCANTTGGGTATCCGGGNGTCCGGTATAGCTACGACCAAANACCGAATGGGCGANTGAAGCGACGAGACTANGAAACACCACACTTAATACCCCCTATAATNCAGGA] [+] EMBL AL697298 [CAGAATCCCCCCGAGGTTTGGTAGCTGGTTAGCCATCGTCTTCCTGCTCGTTTGGCAAGCAGAATGAGATGGTTGTGTGCTGCACGGCTGAGAATATGTTACGAGACGAGGAACATCGTGAGCAACTATCTGCAAGCGATCGAAGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAACAGTATATCCCAGGATAACGTTACAGTTGTGTNGGGCAATAGTACGCAGCAAACTATCGCCTATTTCAGCGAACATTCATTGCACCCGGAATACAGCAACGTATCGACACGAGTCTCTCAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCCAACAATGAANACTATCCCTGGCATGTNCTATGGCATAATCAGACACAATACACCTTTGAGATTNGGCAGGAGCGTGTACATTGCANGGANAAAGAANACAGTAAAAGCATCATCAGAACGGTTATCCACTGTACAACGAGGCATTGCCTTGCAGCAATGGATCCCAGGNTTCTAATGTGACTGGCCTGCCAGCTCAGTGTCGTGGAGCACGACAGAAAGTACTATCNAGCCGTACTGTATTCGTTCCAAGAGGATTGCCGGCCAAAATGTACTAGGTAAACCCATTANTTGCACAGGGAGTCCAACGAATATCAAGTGACCTATCTGGTGNGGACATGTCANTTGGGTATCCGGGNGTCCGGTATAGCTACGACCAAANACCGAATGGGCGANTGAAGCGACGAGACTANGAAACACCACACTTAATACCCCCTATAATNCAGGA] consensusID : consensus_6647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 774 fasta sequence [CGGCTGAGAATGTGTTACTAGACGAGGAACATCGTGAGCAACTATCGCAAGCGATCGAGGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACCTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAAAGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAATAGTACGCAGCAAACTATCGCTATCCAGCGCACATTCATGCACCCGGAGTACAGCAACGTATCGACAGAGTTTAATCTGATACTGTTGAAGCTAGCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAATCAGACACATACACCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCAGAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATCCCGGTTCTAATGTGACCGGCCTGCAGTTGTGTGTGGAGCACGACAGAAAGTACTATCAGCGTTCTGTATTCTTCCAAGAGGATGCCGGCAATGTCCTAGTAAGTCATTTTGCACAGGGAGTCAACGAATATCAAGTGACCTATCTGGTGGGAATGTATGGATCGGGTCGTATAGCTCGACNAACCGATGGCGACGAGGAGGATAGAAACACATTTTACCATATTTACCAACGAATTAGTG] [+] EMBL BX628346 [CGGCTGAGAATGTGTTACTAGACGAGGAACATCGTGAGCAACTATCGCAAGCGATCGAGGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTTAGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACCTATCCGTACATGGCTTTTATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAAAGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAATAGTACGCTGCAAACTATCGCTATCCAGCGCACATTCATGCACCCGGAGTACAGCAACGTATCGACAGAGTTTAATCTGATACTGTTGAAGCTAGCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAATCAGACACATACACCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCAGAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATCCCGGTTCTAATGTGACCGGCCTGCAGTTGTGTGTGGAGCACGACAGAAAGTACTATCAGCGTTCTGTATTCTTCCAAGAGGATGCCGGCAATGTCCTAGTAAGTCATTTTGCACAGGGAGTCAACGAATATCAAGTGACCTATCTGGTGGGAATGTATGGATCGGGTCGTATAGCTCGACNAACCGATGGCGACGAGGAGGATAGAAACACATTTTACCATATTTACCAACGAATTAGTG] [+] EMBL BX603805 [ ACGCTGGTAGCTAAGCAATTCGTCCTAACTACTGCTTCTTGCTATCAAAGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAATAGTACGCAGCAAACTATCGCTATCCAGCGCACATTCATGCACCCGGAGTACAGCAACGTATCGACAGAGTTTAATCTGATACTGTTGAAGCTATCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAACCAGACACATGCATCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCTAAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATC ] [+] EMBL BX613526 [ TGTGTTGGGCAATAGTACGCAGCAAACTATCGCTATTCAGCGAACATTCATGCACCCGGAATACAGCAACGTATCGACAGAGTTTAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCAACAATGAAACTATCCCTGCATGTTTATGGCATAATCAGACACATACACCTTTGAGATTGGAGGAGGTGTACATTGAAGGAAAAGAAAAAGTAAAGCATCATCAGAACGGTTTTCCACTGTACAACGAGGCATGCCTGAGAATGGATCCCGGTTCTAATGTGACCGGCCTGCAGTTGTGTGTGGAGCACGACAGAAAGTACTATCAGCGTTCTGTATTCTTCCAAGAGGATG ] consensusID : consensus_6647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [CCCAGGAGAACGTTACAGTTGGGTGGGGCAATAGTACGCAGCAAACTATCGCTATGCAGCGAACATTCAGGCACCCGGAATACAGCAACGTATCGACAGAGTGAAATCTGATACTCGTGAAGCTAGCTACGGGGGCGACGGTCAACAATGAA] [+] EMBL BX609639 [CCCAGGAGAACGTTACAGTTGGGTGGGGCAATAGTACGCAGCAAACTATCGCTATGCAGCGAACATTCAGGCACCCGGAATACAGCAACGTATCGACAGAGTGAAATCTGATACTCGTGAAGCTAGCTACGGGGGCGACGGTCAACAATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6647#0 CAGAATCCCCCCGAGGTTTGGTAGCTGGTTAGCCATCGTCTTCCTGCTCGTTTGGCAAGC 60 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 ------------------------------------------------------------ consensus_6647#0 AGAATGAGATGGTTGTGTGCTGCACGGCTGAGAATATGTTACGAGACGAGGAACATCGTG 120 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 ------------------------CGGCTGAGAATGTGTTACTAGACGAGGAACATCGTG 36 consensus_6647#0 AGCAACTATCTGCAAGCGATCGAAGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTT 180 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 AGCAACTATC-GCAAGCGATCGAGGAGATTGACAGTTGTAAGCATCTGTACCATGAGTTT 95 consensus_6647#0 AGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAAC-TATCCGTACATGGCTTTT 239 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 AGGAAAAACAAGTCTCCCTACGATGTGGATAACTTCCCAACCTATCCGTACATGGCTTTT 155 consensus_6647#0 ATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTA 299 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 ATCCAAGGCAGTGGCGAACGATCGTGCAACGGTACGCTGGTAGCTAAGCAATTCGTCCTA 215 consensus_6647#0 ACTACTGCTTCTTGCTATCAACAGTATATCCCAGGATAACGTTACAGTTGTGTNGGGCAA 359 consensus_6647#2 -----------------------------CCCAGGAGAACGTTACAGTTGGGTGGGGCAA 31 consensus_6647#1 ACTACTGCTTCTTGCTATCAA-AGCATAGCCCAGGATAACGTTACGGTTGTGTTGGGCAA 274 ******* ******** **** ** ****** consensus_6647#0 TAGTACGCAGCAAACTATCGCCTATTTCAGCGAACATTCATTGCACCCGGAATACAGCAA 419 consensus_6647#2 TAGTACGCAGCAAACTATCGCTA--TGCAGCGAACATTCAG-GCACCCGGAATACAGCAA 88 consensus_6647#1 TAGTACGCAGCAAACTATCGCTA--TCCAGCGCACATTCAT-GCACCCGGAGTACAGCAA 331 ********************* * ***** ******* ********* ******** consensus_6647#0 CGTATCGACACGAGTCTCTCAATCTGATACTCTTGAAGCTAGCTACGGTGGCTACGGTCC 479 consensus_6647#2 CGTATCGACA-GAGTGA---AATCTGATACTCGTGAAGCTAGCTACGGGGGCGACGGTC- 143 consensus_6647#1 CGTATCGACA-GAGTTT---AATCTGATACTGTTGAAGCTAGCTACGGTGGCTACGGTC- 386 ********** **** *********** *************** *** ****** consensus_6647#0 AACAATGAANACTATCCCTGGCATGTNCTATGGCATAATCAGACACAATACACCTTTGAG 539 consensus_6647#2 AACAATGAA--------------------------------------------------- 152 consensus_6647#1 AACAATGAAA-CTATCCCTG-CATGTT-TATGGCATAATCAGACACA-TACACCTTTGAG 442 ********* consensus_6647#0 ATTNGGCAGGAGCGTGTACATTGCANGGANAAAGAANACAGTAAAAGCATCATCAGAACG 599 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 ATTGG--AGGAG-GTGTACATTGAAGGAAAAGAAAAAGTA----AAGCATCATCAGAACG 495 consensus_6647#0 GTTATCCACTGTACAACGAGGCATTGCCTTGCAGCAATGGATCCCAGGNTTCTAATGTGA 659 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 GTTTTCCACTGTACAACGAGGCAT-GCCT---GAGAATGGATCCC--GGTTCTAATGTGA 549 consensus_6647#0 CTGGCCTGCCAGCTCAGTGTCGTGGAGCACGACAGAAAGTACTATCNAGCCGTACTGTAT 719 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 CCGGCCTGC-AGTT--GTGT-GTGGAGCACGACAGAAAGTACTATCAG--CGTTCTGTAT 603 consensus_6647#0 TCGTTCCAAGAGGATTGCCGGCCAAAATGTACTAGGTAAACCCATTANTTGCACAGGGAG 779 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 TC-TTCCAAGAGGAT-GCCGGC---AATGTCCTAGT--AAGTCATT--TTGCACAGGGAG 654 consensus_6647#0 TCCAACGAATATCAAGTGACCTATCTGGTGNGGACATGTCANTTGGGTATCCGGGNGTCC 839 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 TC-AACGAATATCAAGTGACCTATCTGGTGGGAATGTATGGATCGGGTC----------- 702 consensus_6647#0 GGTATAGCTACGACCAAANACCGAATGGGCGANTGAAGCGACGAGACTANGAAACACCAC 899 consensus_6647#2 ------------------------------------------------------------ consensus_6647#1 -GTATAGCT-CGACNAA---CCGAT--GGCGACGAGGAGGATAGAAACACATTTTACCAT 755 consensus_6647#0 ACTTAATACCCCCTATAATNCAGGA 924 consensus_6647#2 ------------------------- consensus_6647#1 ATTTACCAACGAAT-TAGTG----- 774 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||