These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1219 fasta sequence [ATTGGGGAATCTTGTTGCAAAGTGACGCAGTTCAATTGATACTCAGTGGTTTTTGATACAGTTCAATTAGAAGGTGCACAAAGTTCTGGATTTGTAATACGGTGCAGCATAAGTGAGTGGTTCTGTGAAGTTGAAAACGGCCAAGCAAAGGTTAATTATTACCCTGCAACCCTCCAGATCTCGTCCAGCATGTTACATACACGCACGATTGCTCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGGATGGACAAATGGGAAGCGTTCGCCGTTGTCTTCATCATCGTCTTCACCATCATCCTCGGCTGCAATGGAACCTTTAACTGCAAATCAGCTGCTGGCCTCTGCTCTGTCCTCTGGGGGATTAAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGATCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTGCTGCCACCTTTCCTAATGGATCCCGACGAAAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACGGTCGCTCGATGGAGGACGAGCTGCGCTTCAAGCGCGGTACGGCCACCGGTTTTAGTGATCATCGTCAGAAAATTGCTTAAAACAGTCCCCGCTATATCCGTTATCACATGCCCGTCATCACATGCCGCCAGACATCAGAGTCAGTCAGTCAGTCAGTCACGTCGGGGTGGTCGGAGGAAGAGCGTAAATCAGCGGAAACAGGTGCTACGCTTCAGGATGGTGTCCACGTGGCGGTAATTGTTCTCGAGACGCATCCTTGAAGAGCTTCAGCAGGGGCAGAAGCAGCACCAGCAGCCGCACGTCAAGAGCAAGAAACGATGATTTAATAATGATTCGCGTCGAAGGCAGGAAAAAAGGAAGAAACGATTATCCATTTGTTGAAGTTTGACACGATGTCCCACATTGAACACTCTACGGGGACATGGTGTTTCCCGTTTTGGCGATGGACATAGTCACCATAGTTAGTTATACAACCCGCCATTACCGATCCTCAACTTGTTTGGGGGGGAGCTGCCTATATTTCTGCCCAGCAGAAATTGCCCACCCTGGGAGCCTGTGTGTGGACTGTGCGAAATAGTGTATTATATTAACAGA] [+] EMBL BX611211 [ATTGGGGAATCTTGTTGCAAAGTGACGCAGTTCAATTGATACTCAGTGGTTTTTGATACAGTTCAATTAGAAGGTGCACAAAGTTCTGGATTTGTAATACGGTGCAGCATAAGTGAGTGGTTCTGTGAAGTTGAAAACGGCCAAGCAAAGGTTAATTATTACCCTGCAACCCTCCAGATCTCGTCCAGCATGTTACATACACGCACGATTGCTCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGGATGGACAAATGGGAAGCGTTCGCCGTTGTCTTCATCATCGTCTTCACCATCATCCTCGGCTGCAATGGAACCTTTAACTGCAAATCAGCTGCTGGCCTCTGCTCTGTCCTCTGGGGGATTAAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGATCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTGCTGCCACCTTTCCTAATGGATCCCG ] [+] EMBL BX607906 [ CTCCAGATCTCGTCCAGCATGTTACATACACGCACGATTGCTCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGGATGGACAAATGGGAAGCGTTCGCCGTTGTCTTCATCATCGTCTTCACCATCATCCTCGGCGGCAATGGAACCTTTAACTGCAAATCAGCTGCTGGCCTCTGCTCTGTCCTCTGGGGGATTAAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGATCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGATCCGCATTCGTGCTGCCACCTTTCCTAATGGATCCCGACGAAAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACGGTCGCTCGATGGAGGACGAGCTGCGCT ] [+] EMBL BX617643 [ GTGCGATCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTGCTGCCACCTTTCCTAATGGATCCCGACGAAAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACGGTCGCTCGATGGAGGACGAGCTGCGCTTCAAGCGCGGTACGGCCACCGGTTTTAGTGATCATCGTCAGAAAATTGCTTAAAACAGTCCCCGCTATATCCGTTATCACATGCCCGTCATCACATGCCGCCAGACATCAGAGTCAGTCAGTCAGTCAGTCACGTCGGGGTGGTCGGAGGAAGAGCGTAAATCAGCGGAAACAGGTGCTACGCTTCAGGATGGTGTCCACGTGGCGGTAATTGTTCTCGAGACGCATCCTTGAAGAGCTTCAGCAGGGGCAGAAGCAGCACCAGCAGCCGCACGTCAAGAGCAAGAAACGATGATTTAATAATGATTCGCGTCGAAGGCAGGAAAAAAGGAAGAAACGATTATCCATTTGTTGAAGTTTGACACGATGTCCCACATTGAACACTCTACGGGGACATGGTGTTTCCCGTTTTGGCGATGGACATAGTCACCATAGTTAGTTATACAACCCGCCATTACCGATCCTCAACTTGTTTGGGGGGGAGCTGCCTATATTTCTGCCCAGCAGAAATTGCCCACCCTGGGAGCCTGTGTGTGGACTGTGCGAAATAGTGTATTATATTAACAGA] [+] EMBL BX614593 [ GTGCGATCTTCGAGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTGCTGCCACCTTTCCTAATGGATCCCGACGAAAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACGGTCGCTCGATGGAGGACGAGCTGCGCTTCAAGCGCGGTACGGCCACCGGTTTTAGTGATCATCGTCAGAAAATTGCTTAAAACAGTCCCCGCTATATCCGTTATCACATGCCCGTCATCACATGCCGCCTGACATCAGAGTCAGTCAGTCAGTCAGTCACTTCCGGGTGGTCGGAGGAAG ] consensusID : consensus_6648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [CCGATCCGGTTTAGACTAGTGACGGTCGATTGGGGAATCTTGTTGCAAAGTGACGCAGTTCAATTGATACTCAGTGGTTTTTGATACAGTTCAATTAGAAGGTGCACAAAGTGCTGGAATTGTAATACGGTGCAGCATAAATCTCGTCCAGCATGTTACATACACGCACGATTGCTCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGGATGGACAAATGGGAAGCGTTCGCCGTCGTCTTCATCATCGTCTTCACCATCATCCTCGGCTGCAATGGAACCTTTAACTGCGAATCAGCTGCTGGCCTCTGCTCTGTCTCCTGGGGGATTAAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGATCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTCCTGCCACCTTTCCTAATGGATCCCGACGAGAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACG] [+] EMBL BM646600 [CCGATCCGGTTTAGACTAGTGACGGTCGATTGGGGAATCTTGTTGCAAAGTGACGCAGTTCAATTGATACTCAGTGGTTTTTGATACAGTTCAATTAGAAGGTGCACAAAGTGCTGGAATTGTAATACGGTGCAGCATAAATCTCGTCCAGCATGTTACATACACGCACGATTGCTCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGGATGGACAAATGGGAAGCGTTCGCCGTCGTCTTCATCATCGTCTTCACCATCATCCTCGGCTGCAATGGAACCTTTAACTGCGAATCAGCTGCTGGCCTCTGCTCTGTCTCCTGGGGGATTAAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGATCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGCCGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTCCTGCCACCTTTCCTAATGGATCCCGACGAGAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6648#0 ----------------------------ATTGGGGAATCTTGTTGCAAAGTGACGCAGTT 32 consensus_6648#1 CCGATCCGGTTTAGACTAGTGACGGTCGATTGGGGAATCTTGTTGCAAAGTGACGCAGTT 60 ******************************** consensus_6648#0 CAATTGATACTCAGTGGTTTTTGATACAGTTCAATTAGAAGGTGCACAAAGTTCTGGATT 92 consensus_6648#1 CAATTGATACTCAGTGGTTTTTGATACAGTTCAATTAGAAGGTGCACAAAGTGCTGGAAT 120 **************************************************** ***** * consensus_6648#0 TGTAATACGGTGCAGCATAAGTGAGTGGTTCTGTGAAGTTGAAAACGGCCAAGCAAAGGT 152 consensus_6648#1 TGTAATACGGTGCAGCATAA---------------------------------------- 140 ******************** consensus_6648#0 TAATTATTACCCTGCAACCCTCCAGATCTCGTCCAGCATGTTACATACACGCACGATTGC 212 consensus_6648#1 -------------------------ATCTCGTCCAGCATGTTACATACACGCACGATTGC 175 *********************************** consensus_6648#0 TCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGG 272 consensus_6648#1 TCTGCTGCTGGTGGGGCTAGTGGTGCTAGTGAATGCCCAAACGTTTCAGTACTCCCGTGG 235 ************************************************************ consensus_6648#0 ATGGACAAATGGGAAGCGTTCGCCGTTGTCTTCATCATCGTCTTCACCATCATCCTCGGC 332 consensus_6648#1 ATGGACAAATGGGAAGCGTTCGCCGTCGTCTTCATCATCGTCTTCACCATCATCCTCGGC 295 ************************** ********************************* consensus_6648#0 TGCAATGGAACCTTTAACTGCAAATCAGCTGCTGGCCTCTGCTCTGTCCTCTGGGGGATT 392 consensus_6648#1 TGCAATGGAACCTTTAACTGCGAATCAGCTGCTGGCCTCTGCTCTGTCTCCTGGGGGATT 355 ********************* ************************** ********** consensus_6648#0 AAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGA 452 consensus_6648#1 AAACTCTTTAAAACCTAGTGAAAAAGCGCTCCTACGACGCTTTTTGCGGAACCCGTGCGA 415 ************************************************************ consensus_6648#0 TCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGC 512 consensus_6648#1 TCTTCGTGTGGCCAGCTTATTGGCCGCTGCCCACCCAACCAAAGAGCTGTTTCCACTGGC 475 ************************************************************ consensus_6648#0 CGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTGCTGCCACCTTTCCT 572 consensus_6648#1 CGGCAACAGCTTTGACAGTGCGGAATCAGCCGGAGCCGCATTCGTCCTGCCACCTTTCCT 535 ********************************************* ************** consensus_6648#0 AATGGATCCCGACGAAAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACGGTCGCTC 632 consensus_6648#1 AATGGATCCCGACGAGAGCAACGGTGGCATCGGTGGCAGCAATTTGGCCAACG------- 588 *************** ************************************* consensus_6648#0 GATGGAGGACGAGCTGCGCTTCAAGCGCGGTACGGCCACCGGTTTTAGTGATCATCGTCA 692 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 GAAAATTGCTTAAAACAGTCCCCGCTATATCCGTTATCACATGCCCGTCATCACATGCCG 752 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 CCAGACATCAGAGTCAGTCAGTCAGTCAGTCACGTCGGGGTGGTCGGAGGAAGAGCGTAA 812 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 ATCAGCGGAAACAGGTGCTACGCTTCAGGATGGTGTCCACGTGGCGGTAATTGTTCTCGA 872 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 GACGCATCCTTGAAGAGCTTCAGCAGGGGCAGAAGCAGCACCAGCAGCCGCACGTCAAGA 932 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 GCAAGAAACGATGATTTAATAATGATTCGCGTCGAAGGCAGGAAAAAAGGAAGAAACGAT 992 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 TATCCATTTGTTGAAGTTTGACACGATGTCCCACATTGAACACTCTACGGGGACATGGTG 1052 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 TTTCCCGTTTTGGCGATGGACATAGTCACCATAGTTAGTTATACAACCCGCCATTACCGA 1112 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 TCCTCAACTTGTTTGGGGGGGAGCTGCCTATATTTCTGCCCAGCAGAAATTGCCCACCCT 1172 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 GGGAGCCTGTGTGTGGACTGTGCGAAATAGTGTATTATATTAACAGA 1219 consensus_6648#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||