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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence
[GCCAGAATCGCACGAGGNNNGATGAATTTCCAGATACGGGATACTTATGAGGAACTGGTCTACGGTCCGTACTTGTTTGACGCGGTTGTGATGTCGGATCTTGAATGGGTATTGGCGAATATGCAGGAAAAGGAGCAACAAACTTCATTCCAGAGCGCAACGAGAAATGAACGGGTGAATTTAAGGCCTGTTCAGTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGTTTTTCAATGAAAGCAGATGCTCGGCGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTTTCGAAGATCCTAGTGCAGACCACGATCATACAATTTGGTGATTATATGGATGTTCAGCAAATTGCCANTCAGAAGATCTTCGTTTCATCCGCGGTACAATAGAACCAATCATTAGTAACGATATACGGCGTTGGCTTTGCTGCGCAGCTCTGTAGATACGTCTGCNGTCGAGTATAANAGCCCATCTGTTNTTTGCCAACCAGTCAATCAAAAGTACCGTNCGCTTGTGATACCATTTGAGTTTGGATATTGGTTGGGCATACTTCAACGCTTTCAGGATNNCTGAAGGTACAGAANTAACGAAACTATTTAATNGGCG]
[+] EMBL BX466605 [GCCAGAATCGCACGAGGNNNGATGAATTTCCAGATACGGGATACTTATGAGGAACTGGTCTACGGTCCGTACTTGTTTGACGCGGTTGTGATGTCGGATCTTGAATGGGTATTGGCGAATATGCAGGAAAAGGAGCAACAAACTTCATTCCAGAGCGCAACGAGAAATGAACGGGTGAATTTAAGGCCTGTTCAGTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGTTTTTCAATGAAAGCAGATGCTCGGCGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTTTCGAAGATCCTAGTGCAGACCACGATCATACAATTTGGTGATTATATGGATGTTCAGCAAATTGCCANTCAGAAGATCTTCGTTTCATCCGCGGTACAATAGAACCAATCATTAGTAACGATATACGGCGTTGGCTTTGCTGCGCAGCTCTGTAGATACGTCTGCNGTCGAGTATAANAGCCCATCTGTTNTTTGCCAACCAGTCAATCAAAAGTACCGTNCGCTTGTGATACCATTTGAGTTTGGATATTGGTTGGGCATACTTCAACGCTTTCAGGATNNCTGAAGGTACAGAANTAACGAAACTATTTAATNGGCG]
[+] EMBL AL696130 [ cgaggtaAAATG ACGGGTGAA TTAAGG CTGTTCAGTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGTTTTTCAATGAAAGCAGATGCTCGGCGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTTTCGAAGATCCTAGTGCAGACCAC ATCATACAATTTGGTGATTATATGGATGTTCAGCAAATTGCCACTCAGAAGATCTTCG TTCATCCGCGGTACAATAGAACCAATCATTA TAACGATAT C GCGTTGGCTTTGCTGCGCAGCTCTGTAGATACGTCTGC GTCGAGTATAA AACCCATCTG TTTGCCAACCA TCAATCAAA TA CGT AG TTATGATA CATTga ]
consensusID : consensus_6654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[CGAATGGTATGCTTTGGTCCCCAAAAGCAGTGTACAGAACGGTGCAACATGGCGATATCTTGTCTTGGGTAAATTTAATCCTGACGTGCCATGCTTTCCCCCTACATGTGTACCAACATACCAGGAGGTGGATATCAAGAACGTTATCCTTCCTCCAGCCGACGAATCTAAGCAAATCTTTGCCCTGATAGAGCTGCTGGAACCGGCTGATCTAACCAATCCCTACATCAAACCGATCTGTTTACCCTTCATGGACCAGCTATATCGGAACAAGCCCACGGAAGTGGTTGTATCATCCGCCAGTAGTAATTCGTATGCCATCGAAAGCAAGAAACTAACTATGGTAGACAAACCGACATGCCGACAACGATTAATGCGTGAGGGCTTTTTACCACCCTCCGAGGGGAACCCGTCATGTGCAATCGAAGCAGATAAGTTCAAACAAACGAAAATGTCCCTCGCAATGGGCAGTCCGTTTCAGATGGCGGTTGGGTACGGAGGACGCACGCGCTACTTTCTGTACGGGATGAATTTCCAGATACGGGATACTTATGAGGAACTGGTCTACGGTCCGTACTTGTTTGACGCGGNTGTGATGTCGGATCTTGAATGGGTATTGGCGAATATGCAGGAAAANGAGCAACAACTTCATTCCAGAGCGCAAC]
[+] EMBL BX628027 [CGAATGGTATGCTTTGGTCCCCAAAAGCAGTGTACAGAACGGTGCAACATGGCGATATCTTGTCTTGGGTAAATTTAATCCTGACGTGCCATGCTTTCCCCCTACATGTGTACCAACATACCAGGAGGTGGATATCAAGAACGTTATCCTTCCTCCAGCCGACGAATCTAAGCAAATCTTTGCCCTGATAGAGCTGCTGGAACCGGCTGATCTAACCAATCCCTACATCAAACCGATCTGTTTACCCTTCATGGACCAGCTATATCGGAACAAGCCCACGGAAGTGGTTGTATCATCCGCCAGTAGTAATTCGTATGCCATCGAAAGCAAGAAACTAACTATGGTAGACAAACCGACATGCCGACAACGATTAATGCGTGAGGGCTTTTTACCACCCTCCGAGGGGAACCCGTCATGTGCAATCGAAGCAGATAAGTTCAAACAAACGAAAATGTCCCTCGCAATGGGCAGTCCGTTTCAGATGGCGGTTGGGTACGGAGGACGCACGCGCTACTTTCTGTACGGGATGAATTTCCAGATACGGGATACTTATGAGGAACTGGTCTACGGTCCGTACTTGTTTGACGCGGNTGTGATGTCGGATCTTGAATGGGTATTGGCGAATATGCAGGAAAANGAGCAACAACTTCATTCCAGAGCGCAAC]
consensusID : consensus_6654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[GGCAAGAATTGCCCAGGCTTTATATGCAGGAAAAGGAGCACAAACTTCATTCCAGAGCTGCAACGAGAAATGAACGGGTGAATTTAAGGCCTGTTCAGTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGTTTTTCAATGAAAGCAGATGCTCGGCGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTNNTCGAAGATCCTAGTGCAGACCACATCACTTTAAAANAACCCCCCAANANCAAACCTNCNNCCTGGNGCCTTGGAATTCTAGCTTACCTTGNGGACTTGGTTCCAGCCCACACACTTGCCACATCAGAAGATCTTCGCCTCATCCGCGGTACAAACTTTANACCCGCCCANACACAACAACACACACCCCCCACCCCCCCACAAACACACACCCCCNCTTTATCCCCACAAAACTTNTCTACTCAACNCTTTACACAACCCNCAAATTTACTTC]
[+] EMBL AL695822 [GGCAAGAATTGCCCAGGCTTTATATGCAGGAAAAGGAGCACAAACTTCATTCCAGAGCTGCAACGAGAAATGAACGGGTGAATTTAAGGCCTGTTCAGTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGTTTTTCAATGAAAGCAGATGCTCGGCGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTNNTCGAAGATCCTAGTGCAGACCACATCACTTTAAAANAACCCCCCAANANCAAACCTNCNNCCTGGNGCCTTGGAATTCTAGCTTACCTTGNGGACTTGGTTCCAGCCCACACACTTGCCACATCAGAAGATCTTCGCCTCATCCGCGGTACAAACTTTANACCCGCCCANACACAACAACACACACCCCCCACCCCCCCACAAACACACACCCCCNCTTTATCCCCACAAAACTTNTCTACTCAACNCTTTACACAACCCNCAAATTTACTTC]
consensusID : consensus_6654#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[GGCAAGAATTGCCCGAGGNTTGCAACGAGAAATGAACGGGTGAATTTAAGGCCTGTTCAGCTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGGTTATTTCAATGAAAGCAGATGCTCGGCTGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTTTCGAAGATCCTAGTGCAGACCACATCATACAATATTGGTGATTANTATGGATGTTCAGCAAATTGCCACTCAGAAGATCTTCGTTCATCCGCGGTACAATACGCAACCAATCATCTACTACACCGCACTACTCGCGCTANAGGCTTTGCTGCGTCAGCTCTGGTAGCACTACGTCTGCGCTCCGCAGCTATAC]
[+] EMBL AL931231 [GGCAAGAATTGCCCGAGGNTTGCAACGAGAAATGAACGGGTGAATTTAAGGCCTGTTCAGCTATGATTCCAAGAGGACATTGTTCAATTTTAACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCAATGCACCGGTTATTTCAATGAAAGCAGATGCTCGGCTGACACTCATTAGCGACTGGTACGTTATTAGCGCAGCAGACTGTTTCGAAGATCCTAGTGCAGACCACATCATACAATATTGGTGATTANTATGGATGTTCAGCAAATTGCCACTCAGAAGATCTTCGTTCATCCGCGGTACAATACGCAACCAATCATCTACTACACCGCACTACTCGCGCTANAGGCTTTGCTGCGTCAGCTCTGGTAGCACTACGTCTGCGCTCCGCAGCTATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6654#0 GCCAGAATCGCACGAGGNNNGATGAATTTCCAGATACGGGATACTTATGAGGAACTGGTC 60
consensus_6654#3 ------------------------------------------------------------
consensus_6654#2 ------------------------------------------------------------
consensus_6654#1 ----------------------------------------------CGAATGGTATGCTT 14
consensus_6654#0 TACGGTCCGTACTTGTTTGACGCGGTTGTGATGTCGGATCTTGAATGGGTATTGGCGAAT 120
consensus_6654#3 ------------------------------------------------------------
consensus_6654#2 -------------------------------------GGCAAGAATTGCCCAGGCTTTAT 23
consensus_6654#1 TGGTCCCCAAAAGCAGTGTACAGAACGGTGCAACATGGCGATATCTTGTCTTGGGTAAAT 74
consensus_6654#0 ATGCAGGAAAAGGAGCAACAAACTTCATTCCAGAGC-GCAACGAGAAATGAACGGGTGAA 179
consensus_6654#3 ----------------GGCAAGAATTGCCCGAGGNTTGCAACGAGAAATGAACGGGTGAA 44
consensus_6654#2 ATGCAGGAAAAGGAGCA-CAAACTTCATTCCAGAGCTGCAACGAGAAATGAACGGGTGAA 82
consensus_6654#1 TTAATCCTGACGTGCCA--TGCTTTCCCCCTACATGTGTACCAACATACCAGGAGGTGGA 132
* * * * * * * * * * **** *
consensus_6654#0 TTTAAGGCCTGTT----------CAG--TATGATTCCAAGAGGA-CATTGTTCAATTTTA 226
consensus_6654#3 TTTAAGGCCTGTT----------CAGC-TATGATTCCAAGAGGA-CATTGTTCAATTTTA 92
consensus_6654#2 TTTAAGGCCTGTT----------CAG--TATGATTCCAAGAGGA-CATTGTTCAATTTTA 129
consensus_6654#1 TATCAAGAACGTTATCCTTCCTCCAGCCGACGAATCTAAGCAAATCTTTGCCCTGATAGA 192
* * * * *** *** * ** ** *** * * *** * * *
consensus_6654#0 ACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCA 286
consensus_6654#3 ACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCA 152
consensus_6654#2 ACACCTGCGGTATATCGTCCAGAAGGGATCCAACACCATGGATGGGATATGTCTTCTCCA 189
consensus_6654#1 GCTGCTGGAACCGGCTGATCTAACCAATCCCTACATCA-AACCGATCTGTTTACCCTTCA 251
* *** * * * ** *** ** * * * * ** **
consensus_6654#0 ATGCACCGTTT--TTCAATGAAAGCAGATGCTCGGC-GACACT-CATTAGCGACTGGTAC 342
consensus_6654#3 ATGCACCGGTTATTTCAATGAAAGCAGATGCTCGGCTGACACT-CATTAGCGACTGGTAC 211
consensus_6654#2 ATGCACCGTTT--TTCAATGAAAGCAGATGCTCGGC-GACACT-CATTAGCGACTGGTAC 245
consensus_6654#1 -TGGACCAGCT----ATATCGGAACAAGCCCACGGAAGTGGTTGTATCATCCGCCAGTA- 305
** *** * ** * ** * *** * * ** * * * ***
consensus_6654#0 GTTATTAGCGCAGCAGACTGTTT-CGAAGATC-CTAGTGCAGACCACGATCATACAAT-T 399
consensus_6654#3 GTTATTAGCGCAGCAGACTGTTT-CGAAGATC-CTAGTGCAGACCAC-ATCATACAATAT 268
consensus_6654#2 GTTATTAGCGCAGCAGACTGTNNTCGAAGATC-CTAGTGCAGACCAC-ATCACTTTAAAA 303
consensus_6654#1 GTAATTCGTATGCCATCGAAAGCAAGAAACTAACTATGGTAGACAAA-CCGACATGCCGA 364
** *** * ** *** * *** * **** * *
consensus_6654#0 TGGTGATTAT-ATGGATGTTCAGCAAATTGCCANTCAGAAGATCTTCGTTTCATCCGCGG 458
consensus_6654#3 TGGTGATTANTATGGATGTTCAGCAAATTGCCACTCAGAAGATCTTCGTT-CATCCGCGG 327
consensus_6654#2 NAACCCCCCA-ANANCAAACCTNCNNCCTGGNGCCTTGGAATTCTAGCTTACCTTGNGGA 362
consensus_6654#1 CAACGATTAATGCGTGAGGGCTTTTTACCACCCTCCGAGGGGAACCCGT--CATGTGCAA 422
* * * *
consensus_6654#0 TACAATAG--AACCAATCATTAGTAACGATATACGGCGTTGGCTTTGCTGCGCAGCTCTG 516
consensus_6654#3 TACAATACGCAACCAATCATCTAC-----TACACCGCACTACTCGCGCTANA-GGCTTTG 381
consensus_6654#2 CTTGGTTCCAGCCCACACACTTGCCACATCAGAAGATCTTCGCCTCA-TCCGCGGTACAA 421
consensus_6654#1 TCGA------AGCAGATAAGTTCAAACAAACGAAAATGTCCCTCGCAATGGGCAGTCCGT 476
* * * * *
consensus_6654#0 TAGATACGTCTGCNGTCGAGTATAANAGCCCAT-CTGTTNTTTGCCAACCAGTCAATCAA 575
consensus_6654#3 C---TGCGTCAGCTCTGG----TAGCACTACGT-CTGCGCTCCGC-AGCTATAC------ 426
consensus_6654#2 ACTTTANACCCGCCCANA--CACAACAACACACACCCCCCACCCCCCCACAAACACACAC 479
consensus_6654#1 TTCAGATGGCGGTTGGGTACGGAGGACGCACGCGCTACTTTCTGTACGGGATGAATTTCC 536
* * * * *
consensus_6654#0 AAGTACCGTNCGCTTGTGA--TACCATTTGAGTTTGGATATTGGTTGGGCATACTTCAAC 633
consensus_6654#3 ------------------------------------------------------------
consensus_6654#2 CCCCNCTTTATCCCCACAA--AACTTNTCTACTCAACNCTTTACACAACCCNCAAATTTA 537
consensus_6654#1 AGATACGGGATACTTATGAGGAACTGGTCTACGGTCCGTACTTGTTTGACGCGGNTGTGA 596
consensus_6654#0 GCTTTCAGGATNNCTGAAGGTACAGAANTAACGAAACTATTTAATNGGCG---------- 683
consensus_6654#3 ------------------------------------------------------------
consensus_6654#2 CTTC-------------------------------------------------------- 541
consensus_6654#1 TGTCGGATCTTGAATGGGTATTGGCGAATATGCAGGAAAANGAGCAACAACTTCATTCCA 656
consensus_6654#0 ---------
consensus_6654#3 ---------
consensus_6654#2 ---------
consensus_6654#1 GAGCGCAAC 665
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||