These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 917 fasta sequence [CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAAAATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG-AAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCACCTATCCCCAAAATACAC] [+] EMBL BM621400 [CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAAAATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGCAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACC ] [+] EMBL BM595315 [ cCGCTTCAGTGGAAAAAATAATATTTAGTGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG AAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTC ] [+] EMBL CNS08F3Q [ GATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG AAGTGAGCGTGCCGCA GAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTTTCCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATATAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCACCTATCCCCAAAATACAC] consensusID : consensus_6656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCA] [+] EMBL BM613641 [CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCA] consensusID : consensus_6656#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC] [+] EMBL BX619570 [CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6656#0 CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAA 60 consensus_6656#1 ------------------------------------------------------------ consensus_6656#2 ----------------------------------------CCCCNTAGCAGAATACGGCA 20 consensus_6656#0 AATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT 120 consensus_6656#1 ---------------------------------CCGAGCAACCAAACCGCGGTAAAACTT 27 consensus_6656#2 CGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT 80 * ************************ consensus_6656#0 GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT 180 consensus_6656#1 GTGCTTTTGCTGGCAAATTATTGATAATT--------------------CATTATAGGAT 67 consensus_6656#2 GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT 140 ***************************** *********** consensus_6656#0 TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGC 240 consensus_6656#1 TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGC 127 consensus_6656#2 TCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGC 200 ******* ********************************* ********* ******** consensus_6656#0 ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 300 consensus_6656#1 ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 187 consensus_6656#2 ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 260 ************************************************************ consensus_6656#0 CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 360 consensus_6656#1 CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 247 consensus_6656#2 CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 320 ************************************************************ consensus_6656#0 CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 420 consensus_6656#1 CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 307 consensus_6656#2 CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 380 ************************************************************ consensus_6656#0 C-ATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTT--CA 477 consensus_6656#1 C-ATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTT--CA 364 consensus_6656#2 CCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCA 440 * ****************************************************** ** consensus_6656#0 AAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGA 537 consensus_6656#1 AAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGA 424 consensus_6656#2 AAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC------------------- 481 ******************************** * **** consensus_6656#0 GCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAG 597 consensus_6656#1 GCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAG 484 consensus_6656#2 ------------------------------------------------------------ consensus_6656#0 GACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCG 657 consensus_6656#1 GACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCG 544 consensus_6656#2 ------------------------------------------------------------ consensus_6656#0 CTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTG 717 consensus_6656#1 CTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTG 604 consensus_6656#2 ------------------------------------------------------------ consensus_6656#0 ACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTAC 777 consensus_6656#1 ACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTAC 664 consensus_6656#2 ------------------------------------------------------------ consensus_6656#0 AAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCG 837 consensus_6656#1 AAGCGCA----------------------------------------------------- 671 consensus_6656#2 ------------------------------------------------------------ consensus_6656#0 AAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAAC 897 consensus_6656#1 ------------------------------------------------------------ consensus_6656#2 ------------------------------------------------------------ consensus_6656#0 CACCTATCCCCAAAATACAC 917 consensus_6656#1 -------------------- consensus_6656#2 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||