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Anopheles gambiae
cluster # 6656 cluster # 6656       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6656#0 length = 917 sequences # 3  
consensus_6656#1 length = 671 sequences # 1  
consensus_6656#2 length = 481 sequences # 1  

consensusID : consensus_6656#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 917
fasta sequence
                              [CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAAAATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG-AAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCACCTATCCCCAAAATACAC]

[+] EMBL BM621400             [CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAAAATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGCAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACC                                                                                                                                                                                                                            ]
[+] EMBL BM595315             [                                                               cCGCTTCAGTGGAAAAAATAATATTTAGTGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG AAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTC                                                                                                                                                                                                  ]
[+] EMBL CNS08F3Q             [                                                                                                                                                              GATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG AAGTGAGCGTGCCGCA GAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTTTCCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATATAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCACCTATCCCCAAAATACAC]


>consensus_6656#0 CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAA AATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGC ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC CATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAA ATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCG TGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGAC TCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTC AACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACT CTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAG CGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAA TGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCAC CTATCCCCAAAATACAC



consensusID : consensus_6656#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence
                              [CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCA]

[+] EMBL BM613641             [CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCA]


>consensus_6656#1 CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATT ATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTC ACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAAC AATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTT GATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCA TGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATT TTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAA GTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATA AGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCC ATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACT ACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTT GTACAAGCGCA



consensusID : consensus_6656#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence
                              [CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC]

[+] EMBL BX619570             [CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC]


>consensus_6656#2 CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCA ACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGA TCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAA TGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTC GTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGA AGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAAT ACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGC ATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTN C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6656#0      CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAA 60
consensus_6656#1      ------------------------------------------------------------
consensus_6656#2      ----------------------------------------CCCCNTAGCAGAATACGGCA 20
                                                                                  

consensus_6656#0      AATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT 120
consensus_6656#1      ---------------------------------CCGAGCAACCAAACCGCGGTAAAACTT 27
consensus_6656#2      CGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT 80
                                                        * ************************

consensus_6656#0      GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT 180
consensus_6656#1      GTGCTTTTGCTGGCAAATTATTGATAATT--------------------CATTATAGGAT 67
consensus_6656#2      GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT 140
                      *****************************                    ***********

consensus_6656#0      TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGC 240
consensus_6656#1      TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGC 127
consensus_6656#2      TCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGC 200
                      ******* ********************************* ********* ********

consensus_6656#0      ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 300
consensus_6656#1      ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 187
consensus_6656#2      ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 260
                      ************************************************************

consensus_6656#0      CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 360
consensus_6656#1      CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 247
consensus_6656#2      CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 320
                      ************************************************************

consensus_6656#0      CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 420
consensus_6656#1      CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 307
consensus_6656#2      CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 380
                      ************************************************************

consensus_6656#0      C-ATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTT--CA 477
consensus_6656#1      C-ATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTT--CA 364
consensus_6656#2      CCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCA 440
                      * ******************************************************  **

consensus_6656#0      AAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGA 537
consensus_6656#1      AAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGA 424
consensus_6656#2      AAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC------------------- 481
                      ******************************** * ****                     

consensus_6656#0      GCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAG 597
consensus_6656#1      GCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAG 484
consensus_6656#2      ------------------------------------------------------------
                                                                                  

consensus_6656#0      GACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCG 657
consensus_6656#1      GACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCG 544
consensus_6656#2      ------------------------------------------------------------
                                                                                  

consensus_6656#0      CTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTG 717
consensus_6656#1      CTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTG 604
consensus_6656#2      ------------------------------------------------------------
                                                                                  

consensus_6656#0      ACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTAC 777
consensus_6656#1      ACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTAC 664
consensus_6656#2      ------------------------------------------------------------
                                                                                  

consensus_6656#0      AAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCG 837
consensus_6656#1      AAGCGCA----------------------------------------------------- 671
consensus_6656#2      ------------------------------------------------------------
                                                                                  

consensus_6656#0      AAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAAC 897
consensus_6656#1      ------------------------------------------------------------
consensus_6656#2      ------------------------------------------------------------
                                                                                  

consensus_6656#0      CACCTATCCCCAAAATACAC 917
consensus_6656#1      --------------------
consensus_6656#2      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)