These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1032 fasta sequence [GCGAACGGCAAAACAATGCGCTGTTGCGATCGTGTTCCGGTGATGGTGGTGAGCAGTTTGGCGCTGTGTGGTGTGCTGCTGCTCGCATTGTCTCACACACCATTGGTTACGGCAGGCGGATTGCCCTGCGCCTTGCGGCAGTATCCGAACGGAGCGGTGTGCGTGTGCAATGCGACGTACTGCGATACGCTCGAGTACCGCGAGCCGACGGAGCTGGGCAGCTTTCTGCTAGTGTCCAGCAGCAGTGGCGGGTTGCGCTTCGCCCAAACCGAGGGCAACTTTTCGCGCACTGCCAAACAGCAGCGGCCGATCCGTGCGGAAGCGGACATCACGATCACGCTCGACCAGACCGCCGCCCGCTATCCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGCGACAAGCCACTGCAGCAGCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCTGAATCGTATATCGTGTACGTGATGCAGGACCTGCAGCACAGTGTGCACGGGTGGATCGATTGGAATCTGGTGCTCGATGAGCGGGGCGGTCCGAACTATGCGGACAACTTTGTCGAGAGTGCGGTGATTGTGAACGGAACGTCCTGGGAGGAAGCGTACAAGCAGCCTATTTTCTACGGGCTGGGACACTTTTCACGCTTCATACTGCCCGGCTCGGTGCGGCTGGAGGTGCAGTCGTCCAGCGGCGATGTGCAGGTCATTGCATTTGAGCGGCCCGACAAGCGCACGGTGCTCGTAATGTACAACCGAGCCAACTGGAAATCGAGCGTCCGCATAGAGGATAAGCGGTACGGCAGTGTGCGGGTACGTCTTCCACCCAAATCGGTGCATACGATGCTCTACCTATAAGACTGACTTCTAGT------ACGAAAGGGTACCAGTGCTACACCAAACCATCGTAACCTCGCAGAATCAATAGACGGGAGGAACAAAAAACAAACCAAAAGCGAATACACACAAACACACAAAAAACCCCCGAAGAATAAATGGAAGCTCGTTAGGAAGCTGAAGGTGCAAAGAAAA] [+] EMBL CNS09KML [GCGAACGGCAAAACAATGCGCTGTTGCGATCGTGTTCCGGTGATGGTGGTGAGCAGTTTGGCGCTGTGTGGTGTGCTGCTGCTCGCATTGTCTCACACACCATTGGTTACGGCAGGCGGATTGCCCTGCGCCTTGCGGCAGTATCCGAACGGAGCGGTGTGCGTGTGCAATGCGACGTACTGCGATACGCTCGAGTACCGCGAGCCGACGGAGCTGGGCAGCTTTCTGCTAGTGTCCAGCAGCAGTGGCGGGTTGCGCTTCGCCCAAACCGAGGGCAACTTTTCGCGCACTGCCAAACAGCAGCGGCCGATCCGTGCGGAAGCGGACATCACGATCACGCTCGACCAGACCGCCGCCCGCTATCCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGCGACAAGCCACTGCAGCAGCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCTGAATCGTATATCGTGTACGTGATGCAGGACCTGCAGCACAGTGTGCACGGGTGGATCGATTGGAATCTGGTGCTCGATGAGCGGGGCGGTCCGAACTATGCGGACAACTTTGTCGAGAGTGCGGTGATTGTGAACGGAACGTCCTGGGAGGAAGCGTACAAGCAGCCTATTTTCTACGGGCTGGGACACTTTTCACGCTTCATACTGCCCGGCTCGGTGCGGCTGGAGGTGCAGTCGTCCAGCGGCGATGTGCAGGTCATTGCATTTGAGCGGCCCGACAAGCGCACGGTGCTCGTAATGTACAACCGAGCCAACTGGAAATCGAGCGTCCGCATAGAGGATAAGCGGTACGGCAGTGTGCGGGTACGTCTTCCACCCAAATCGGTGCATACGATGCTCTACCTATAAGACTGACTGCTAGT ACGAAAGGGTACCAGTGCTACACCAAACCATC ] [-] EMBL CNS09KMM [ GGAAGCGGACATAACGATAACGCTCGACCAGACCGCCGCCCGCTATCCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGCGACAAGCCACTGCAGCAGCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCTGAATCGTATATCGTGTACATGATGCAGGACCTGCAGCACAGTGTGCACGGGTGGATCGATTGGAATCTGGTGCTCGATGAGCGGGGCGGTCCGAACTATGCGGACAACTTTGTCGAGAGTGCGGTGATTGTGAACGGAACGTCCTGGGAGGAAGCGTACAAGCAGCCTATTTTCTACGGGCTGGGACACTTTTCACGCTTCATACTGCCCGGCTCGGTGCGGCTGGAGGTGCAGTCGTCCAGCGGCGATGTGCAGGTCATTGCATTTGAGCGGCCCGACAAGCGCACGGTGCTCGTAATGTACAACCGAGCCCACTGGAAATCGAGCGTCCGCATAGAGGATAAGCGGTACGGCAGTGTGCGGGTACGTCTTCCACCCAAATCGGTGCATACGATGCTCTACCTATAAGACTGACTTCTAGT ACGAAAGGGTACCAGTGCTACACCAAACCATCGTAACCTCGCAGAATCAATAGACGGGAGGAACAAAAAACAAACCAAAAGCGAATACACACAAACACACAAAAAACCCCCGAAGAATAAATGGAAGCTCGTTAGG ] [-] EMBL AGA281055 [ GCAGCCTATTTTCTACGGGCTGGGACACTTTTCACGCTTCATACTGCCCGGCTCGGTGCGGCTGGAGGTGCAGTCGTCCAGCGGCGATGTGCAGGTCATTGCATTTGAGCGGCCCGACAAGCGCACGGTGCTCGTAATGTACAACCGAGCCAACTGGAAATCGAGCGTCCGCATAGAGGATAAGCGGTACGGCAGTGTGCGGGTACGTCTTCCACCCAAATCGGTACATACGATGCTCTACCTATAAGACTGACTTCTAGTATGAACACCAAACCAAACCAGTGCTACACCAAACCATCGTAACCTCGCAGAATCAATAGACGGGAGGAACAAAAAACAAACCAAAAGCGAATACACAC ACACACACAAAACCCCCGAAGAATAAATGGAAGCTCGTTAGGAAGCTGAAGGTGCAAAGAAAA] consensusID : consensus_6657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 878 fasta sequence [CCGCTGGGCCGGCTGAACCCGGCGCTGCGCGAAAGCCTGTACAAAGCGTACTACTCGCCGACGCAGGGGATTGCGTACCGGTTTATGCGCGTACCGATCGGTGGCTGTGATTTTGACCTGGCACCGTGGGCGTACAACGAGCTGCCGGTGAACGATGCAGCCCTGTCCAACTTCACCCGGCTGGATGAGCGCGATCTGGTGAAGGTGGCCCAGATCAAGGAGCTGATGAACGTGACGGGTAACGGCGAGATACGGCTGATCGGTGCCGCCTGGAGTCCGCCGCCGTGGATGAAAACGAACAACGATTGGACGGGCGCCAGCCGGCTACGACCCGAGTACTACCAGACGTGGGCCGACTATCACGTGCGCTATCTGGAGCTGATGCGTGCCGCCGGGCTAAACTTTTGGGCCATCTCGACCGGCAACGAACCGCTGAACGGTGTGATCGGCTTCCTGTTTGTGCACTTCATGAGCCTGGGCTGGATTGCGCAGGACCAGGGCCGCTGGGTGGGAGAGAACCTCGGCCCGGCGCTCCGCGCTTCCGCCGTCAGCGAGGTGAAGCTGTTCGGGTGCGACGATCAGCGGTACACGTTCCCGCTGTGGTTCAAGCTGATGGACGAGGGCCACCCGAACGCGACGCGCTACCTGGACGGGCTGGCCGTCCACTGGTACTGGGACGGTGTGGCGCCGGCCGCCCTGCTCGACCAGACTGCCGCCCGCTATCCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGCGACAAGCCACTGCAGCAGCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCCGAATCGTACATCGTGTACGTGATGCAGGATCTGCAGCACAGTGTGCACGGATGGATCGATTGGAA] [+] EMBL BM603965 [CCGCTGGGCCGGCTGAACCCGGCGCTGCGCGAAAGCCTGTACAAAGCGTACTACTCGCCGACGCAGGGGATTGCGTACCGGTTTATGCGCGTACCGATCGGTGGCTGTGATTTTGACCTGGCACCGTGGGCGTACAACGAGCTGCCGGTGAACGATGCAGCCCTGTCCAACTTCACCCGGCTGGATGAGCGCGATCTGGTGAAGGTGGCCCAGATCAAGGAGCTGATGAACGTGACGGGTAACGGCGAGATACGGCTGATCGGTGCCGCCTGGAGTCCGCCGCCGTGGATGAAAACGAACAACGATTGGACGGGCGCCAGCCGGCTACGACCCGAGTACTACCAGACGTGGGCCGACTATCACGTGCGCTATCTGGAGCTGATGCGTGCCGCCGGGCTAAACTTTTGGGCCATCTCGACCGGCAACGAACCGCTGAACGGTGTGATCGGCTTCCTGTTTGTGCACTTCATGAGCCTGGGCTGGATTGCGCAGGACCAGGGCCGCTGGGTGGGAGAGAACCTCGGCCCG ] [+] EMBL AGA282683 [ GGTGTGATCGGCTTCCTGTTTGTGCACTTCATGAGCCTGGGCTGGATTGCGCAGGACCAGGGCCGCTGGGTGGGAAAGAACCTCGGCCCGGCGCTCCGCGCTTCCGCCGTCAGCGAGGTGAAGCTGTTCGGGTGCGACGATCAGCGGTACACGTTCCCGCTGTGGTTCAAGCTGATGGACGAGGGCCACCCGAACGCGACGCGCTACCTGGACGGGCTGGCCGTCCACTGGTACTGGGACGGTGTGGCGCCGGCCGCCCTGCTCGACCAGACTGCCGCCCGCTATCCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGCGACAAGCCACTGCAGCAGCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCCGAATCGTACATCGTGTACGTGATGCAGGATCTGCAGCACAGTGTGCACGGATGGATCGATTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6657#0 GCGAACGGCAAAACAATGCGCTGTTGCGATCGTGTTCCGGTGATGGTGGTGAGCAGTTTG 60 consensus_6657#1 ------------------------------------------------------------ consensus_6657#0 GCGCTGTGTGGTGTGCTGCTGCTCGCATTGTCTCACACACCATTGGTTACGGCAGGCGGA 120 consensus_6657#1 ---CCGCTGGGCCGGCTGAACCCGGCGCTG-------CGCGAAAGCCTGTACAAAGCGTA 50 * * ** **** * ** ** * * * * * * *** * consensus_6657#0 TTGCCCTGCGCCTTGCGGCAGTATCCGAACGGAGCGGTGTGCGTGTGCAATGCGACGTAC 180 consensus_6657#1 CTACTCGCCGAC--GCAGGGGATTGCGTACCGGTT--TATGCGCGTACCGATCGGTG-GC 105 * * * ** * ** * * * ** ** * * **** ** * ** * * consensus_6657#0 TGCGATAC-GCTCGAGTACCGCGAGCCGACGGAGCTGGGCAGCTTTCTGCTAGTGTCCAG 239 consensus_6657#1 TGTGATTTTGACCTGGCACCGTGGGCGTACAACG------AGCTGCCGGTGAACGAT--G 157 ** *** * * * **** * ** ** * **** * * * * * consensus_6657#0 CAGCAGTGGCGGGTTGCGCTTCGCCCAAACCGAGGGCAACTTTTCGCGCACTGCCAAACA 299 consensus_6657#1 CAGCCCTGTCCAACTTCACCCGGCTGGA--TGAGCGCGATCTGGTGAAGGTGGCCCAGAT 215 **** ** * * * * ** * *** ** * * * *** * consensus_6657#0 GCAGCGGCCGATCCGTGCGGAAGCGGACATCACGATCACGCTCGACCAGACCGCCGCCCG 359 consensus_6657#1 CAAGGAGCTGATGAACGTGACGGGTAACGGCGAGAT-ACGGCTGATCGG--TGCCGCCTG 272 ** ** *** * * * ** * *** *** ** * * ****** * consensus_6657#0 CTATCCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGCGACAAGCCACTGCAGCA 419 consensus_6657#1 GAGTCCGCCGCCGTGGATGAAAACGAACAACGATTGGACGGGCGCCAGCCGGCTACGAC- 331 **** ****** * * * * * * ***** ** * ** * * consensus_6657#0 GCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCTGAATCGTATATCGTGTACGTGATGCA 479 consensus_6657#1 ---CCGAGTACTACCAGA--CGTGGG-----------CCGACTATCACGTGCGCTAT-CT 374 ** * * * ****** ** **** ** ** ** * consensus_6657#0 GGACCTGCAGCACAGTGTGCACGGGTGGATCGATTGGAATCTGGTGCTCGATGAGCGGGG 539 consensus_6657#1 GGAGCTGATGCGTGCCGC---CGGGCTAAACTTTTGGGCCATCTCGACCGGC-AACGAAC 430 *** *** ** * **** * * **** * * ** * ** consensus_6657#0 CGGTCCGAACTATGCGGACAACTTTGT---CGAGAGTGCGGTGATTGTGAACGGAACGTC 596 consensus_6657#1 CG--CTGAACGGTGTGATCGGCTTCCTGTTTGTGCACTTCATGAGCCTGGGCTGGATTGC 488 ** * **** ** * * *** * * * *** ** * * * * consensus_6657#0 CTGGGAGGAAGCGTACAAGCAGCCTATTTTCTACGGGCTGGGACACTTTTCACGCTTCAT 656 consensus_6657#1 GCAGGACCAGGGCCGCTGGGTGGGAGAGAACCTCGGCCCGGCGC----TCCGCGCTTC-C 543 *** * * * * * * *** * ** * * * ****** consensus_6657#0 ACTGCCCGGCTCGGTGCGGCTGG--AGGTGCAGTCGTCCAGCGGCG-ATGTGCAGGTCAT 713 consensus_6657#1 GCCGTC-AGCGAGGTGAAGCTGTTCGGGTGCGA-CGATCAGCGGTACACGTTCCCGCTGT 601 * * * ** **** **** ***** ** ****** * ** * * * consensus_6657#0 TGCATTTGAGCGGCCCGACAAGCGCACGGTGCTCGTAATGTACAACCGAGCCAACTGGAA 773 consensus_6657#1 GG--TTCAAGCTGATGGACGAGGGCCACCCGAACGCGACGCGCTACCTGGACGG------ 653 * ** *** * *** ** ** * ** * * * *** * * consensus_6657#0 ATCGAGCGTCCGCATAGAGGATAAGCGGTACGGCAGTGTGCGGGTACGTCTTCCACCCAA 833 consensus_6657#1 GCTGGCCGTCCAC-TGGTACTGGGACGGTGTGGCGC----CGGCCGCCCTGCTCGACCAG 708 * ***** * * * **** *** *** * * *** consensus_6657#0 ATCGGTGCATACGATGCTCTACCTATAAGACTGACTTCTAGTACGAAAGGGTACCAGTGC 893 consensus_6657#1 ACTGCCGCCCGCTAT------CCGGACAAGTGGATCTTCAACACGGAAGCCTCGCTGGGC 762 * * ** * ** ** * ** * * *** *** * * * ** consensus_6657#0 TACACCAAACCATCGTAACCTCGCAGAATCAATAGACGGGAGGAACAAAAAACAAACCAA 953 consensus_6657#1 GACAAGCCACTGCAGCAGCATCGGCCCATCCTGGGGTCGTGGGAGCGGGCCG-AATCGTA 821 *** ** * * * *** *** * * *** * ** * * consensus_6657#0 AAGCGAATACACACAAACACACAAAAAACCCCCGAAGAATAAATGGAAGCTCGTTAGGAA 1013 consensus_6657#1 CATCGTGTACGTGATGCAGGATCTGCAGCACAGTGTGCACGGATGGA---TCGATTGGAA 878 * ** *** * * * * * * ***** *** * **** consensus_6657#0 GCTGAAGGTGCAAAGAAAA 1032 consensus_6657#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||