These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1165 fasta sequence [GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCGTGCCGAAGATCAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGCTACAGAAGCAGCAAAACACGGGCGCCACCAGTAAGCAAAGCACGGAAACACCTTCAGCCGACGTTCTGACCCTCCAGCAACCGAATCCCCCAGCACCGGCCACCGTTGTAGTGGTGAAGGAAGAGCCATCCCAAAAGGCACCGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCGGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCGGNCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCG-AATCG-AAAAAGACAAGCAGCGGCAACGGAACAAAGCGAAATCGTCCGTCGGGCAGGGCGGTGGGCGCCAATCGTCCAACAAACCGGTCGTACCGTTCGATTACAATAACGTCGATTTTAGCCGCTTCCAGGGCGGCTCGAAACCGCTCGCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGTACGAGCGGTGGGCACGGTGGGGGTGGAAAGCGCAAGTAACAATCCGGTACGCGGTAGGGGGAAAACGCAATGAACGAGACGTTTGTAAAAGTATAAAAAATAAAACTCCTCTCCAATTTTAAAAAAAA] [+] EMBL BX620501 [GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCGTGCCGAAGATCAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGCTACAGAAGCAGCAAAACACGGGCGCCACCAGTAAGCAAAGCACGGAAACACCTTCAGCCGACGTTCTGACCCTCCAGCAACCGAATCCCCCAGCACCGGCCACCGTTGTAGTGGTGAAGGAAGAGCCATCCCAAAAGGCACCGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCNGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCGGNCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCG AATCG AAAAAGACAAG ] [+] EMBL AGA285387 [ GCCATCCCAAAAGGCACAGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCCTTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGCCGGTGGCGGGTGAGCAGAAGCCGGCAGATAAGCTGCACATGGAACCGTTCAA ] [+] EMBL BX609157 [ GCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCGGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCGGCCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCGAAATCGAAAAAAGACAAGCAGCGGCAACGGAACAAAGCGAAATCGTCCGTCGGGCAGGGCGGTGGGCGCCAATCGTCCAACAAACCGGTCGTACCGTTCGATTACAATAACGTCGATTTTAGCCGCTTCCAGGGCGGCTCGAAACCGCTCGCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGTACGAGCGGTGGGCACGGTGGGGGTGGAAAGCGCAAGTAACAATC ] [-] EMBL AGA284090 [ GCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGCACGAGCGGTGGGCACGGTGGCGGTGGAAAGCGCAAGTAACAATCCGGTACGCGGTAGGGGGAAAACGCAATGAACGAGACGTTTGTAAAAGTATAAAAAATAAAACTCCTCTCCAATTTTAAAAAAAA] consensusID : consensus_6658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGGTATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCCCTAGTGACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCAGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAAGAAC] [+] EMBL BX469453 [GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGGTATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCCCTAGTGACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCAGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAAGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6658#0 -------------------------GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCG 35 consensus_6658#1 GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGG 60 * ** * ** * ** * * ** * consensus_6658#0 TGCCGAAGATCAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAA 95 consensus_6658#1 TATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAA 120 * ************************************************* consensus_6658#0 GTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGCAGGATCAATCAG 155 consensus_6658#1 GTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCC 180 *********************************************** * * consensus_6658#0 AGGATGCAGGAAGCGAGAATAAAGCTAGTAAATACGAACAGAACAAGTTCAACACACCGT 215 consensus_6658#1 CTAGTG-ACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCA 239 ** * **** * * **** ** * ** * *** ** consensus_6658#0 TCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGC 275 consensus_6658#1 GCAGGATCAATCAGAGGA--TGCAGGAAGCGAGAA-TAAAGCTAGGTAAATACGAA-CAG 295 * * *** * * *** * *** * **** * * ** ***** * consensus_6658#0 TACAGAAGCAGCAAAACA--CGGGCGCCACCAGTAAGCAAAGCACG-GAAACACCTTCAG 332 consensus_6658#1 AACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAA 355 *** ** ** * * ** *** * * * ** * * * * ** ** * consensus_6658#0 CCGACGTTCTGACCCTCCAGCAACCGAATCCCCCAGCACCGGCCACCGTTGTAGTGGTGA 392 consensus_6658#1 AGAAC------------------------------------------------------- 360 ** consensus_6658#0 AGGAAGAGCCATCCCAAAAGGCACCGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGC 452 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 TCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAA 512 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 CGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGG 572 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 AAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCGGTGGCGGGTG 632 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 AGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCG 692 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 GNCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCGAATCGAAAAAGACAAGCAG 752 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 CGGCAACGGAACAAAGCGAAATCGTCCGTCGGGCAGGGCGGTGGGCGCCAATCGTCCAAC 812 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 AAACCGGTCGTACCGTTCGATTACAATAACGTCGATTTTAGCCGCTTCCAGGGCGGCTCG 872 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 AAACCGCTCGCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGAC 932 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 GACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGG 992 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 ATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGTACGAGCGGTGGGCAC 1052 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 GGTGGGGGTGGAAAGCGCAAGTAACAATCCGGTACGCGGTAGGGGGAAAACGCAATGAAC 1112 consensus_6658#1 ------------------------------------------------------------ consensus_6658#0 GAGACGTTTGTAAAAGTATAAAAAATAAAACTCCTCTCCAATTTTAAAAAAAA 1165 consensus_6658#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||