cluster # 6663

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Anopheles gambiae
cluster # 6663 cluster # 6663 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6663#0 length = 988 sequences # 3

consensus_6663#1 length = 408 sequences # 1
consensus_6663#2 length = 313 sequences # 1

consensusID : consensus_6663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 988
fasta sequence

                              [GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATATGTACCGGATAGGGTGGAACTGTTCCAAGCAGCTTATGCACGCGATGGAACAGGAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGGGCAGCAAAGTATTTGNATTTTCATTGTTTTGTTCGAGGGGGGAAGGGAATAACATTCCTACTTGCAGTTTGTTTTGTCACCCACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGCACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGGATGAGGATCAGCAGAGCATGTGTGTGTGTGTGTGGGTGTGGAGTAAAACTAGTAGAGATACTTTACAATCAATTAGCTAGCGGTTTTGGTGGGAACCTGTTGGACAGTTCAGCAGGTTCAACACTCTGGGAGTTAAAAGTGCCCAACAAATCCTCCCCCACTTCCTCCCTTTCACCCCCTCGATTACGATATGGTTACGTGTGTGTGTGTTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGTTTGTATGTTTGCATACCTTTGGTGTGCCGGCGCTTGGCCGGCNATATTT]

[+] EMBL BX628328             [GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATATGTACCGGATAGGGTGGAACTGTTCCAAGCAGCTTATGCACGCGATGGAACAGGAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGGGCAGCAAAGTATTTGNATTTTCATTGTTTTGTTCGAGGGGGGAAGGGAATAACATTCCTACTTGCAGTTTGTTTTGTCACCCACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGCACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX625013             [                                                                                                                                                                                                                                        gGTCACCCACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGCACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGGATGAGGATCAGCAGAGCATGTGTGTGTGTGTGTGGGTGTGGAGTAAAACTAGTAGAGATACTTTACAATCAATTAGCTAGCGGTTTTGGTGGGAACCTGTTGGACAGTTCAGCAGGTTCAACACTCTGGGAGTTAAAAGTGCCCAACAAATCCTCCCCCACTTCCTCCCTTTCACCCCCTCGATTACGATATGGTTACGTGTGTGTGTGTTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGTTTGTATGTTTGCATACCTTTGGTGTGCCGGCGCTT              ]
[+] EMBL BX625767             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTTCACCCCCTCTATTACGATATGGTTACGTGTGTGTGTGTTNANAATGTGTTTACTGAAACTCTGGCGCATACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGNTTGTATGNTTGCATACCTTTGGTGTGCCGGCGCTTGGCCGGCNATATTT]




>consensus_6663#0
GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATA
TGTACCGGATAGGGTGGAACTGTTCCAAGCAGCTTATGCACGCGATGGAACAGGAAAGGA
TTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGGGCAGCAAAGTATTTGNATTTTC
ATTGTTTTGTTCGAGGGGGGAAGGGAATAACATTCCTACTTGCAGTTTGTTTTGTCACCC
ACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGC
ACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAA
TCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTAC
TACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTA
GAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACT
AAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTG
TCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGGATGAG
GATCAGCAGAGCATGTGTGTGTGTGTGTGGGTGTGGAGTAAAACTAGTAGAGATACTTTA
CAATCAATTAGCTAGCGGTTTTGGTGGGAACCTGTTGGACAGTTCAGCAGGTTCAACACT
CTGGGAGTTAAAAGTGCCCAACAAATCCTCCCCCACTTCCTCCCTTTCACCCCCTCGATT
ACGATATGGTTACGTGTGTGTGTGTTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGC
TAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGTTTGTATGTTTGCATACCTTTG
GTGTGCCGGCGCTTGGCCGGCNATATTT

consensusID : consensus_6663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [ACAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAAAAGTGCCCAACAAATACGTCCCCCATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGCTCTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATTAACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCANGTAGAAGGCAGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAGGGCGCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA]

[+] EMBL AL930705             [ACAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAAAAGTGCCCAACAAATACGTCCCCCATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGCTCTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATTAACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCANGTAGAAGGCAGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAGGGCGCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA]




>consensus_6663#1
ACAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAAAAGTGCCCAACAAATACGTCCCCC
ATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTGT
TTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGCT
CTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATTA
ACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCANG
TAGAAGGCAGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAGGGC
GCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA

consensusID : consensus_6663#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGCAAAAGCAAAGGGCAGCAAAGGTATTTGATTTCATTGTTTTGTTCGACGGGGGGACAGGGCAATAACATTCCTACTTGCAGTTATGTTATTGTCACCCACTTCCAACCGCATCAATCGCACAAATCAACTGACAATAGAACGCAGCAGTAAAAAGCAACGCACACCTAACCGCACAGACCGCACCAATAGAGANAGGTATTAAAATCCGAACGAAANCATGTATCCAATCTGNGATTTNTA]

[+] EMBL BX469253             [AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGCAAAAGCAAAGGGCAGCAAAGGTATTTGATTTCATTGTTTTGTTCGACGGGGGGACAGGGCAATAACATTCCTACTTGCAGTTATGTTATTGTCACCCACTTCCAACCGCATCAATCGCACAAATCAACTGACAATAGAACGCAGCAGTAAAAAGCAACGCACACCTAACCGCACAGACCGCACCAATAGAGANAGGTATTAAAATCCGAACGAAANCATGTATCCAATCTGNGATTTNTA]




>consensus_6663#2
AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAAGGATTCTGTTTTTTTTC
GTTCGTTTAAAGCAAAAGCAAAGGGCAGCAAAGGTATTTGATTTCATTGTTTTGTTCGAC
GGGGGGACAGGGCAATAACATTCCTACTTGCAGTTATGTTATTGTCACCCACTTCCAACC
GCATCAATCGCACAAATCAACTGACAATAGAACGCAGCAGTAAAAAGCAACGCACACCTA
ACCGCACAGACCGCACCAATAGAGANAGGTATTAAAATCCGAACGAAANCATGTATCCAA
TCTGNGATTTNTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6663#0      GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATA 60
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      -----------------------------------------------------------A 1
                                                                                  

consensus_6663#0      TGTACCGGATAGGGTGGAACTGTTCCAAG--CAGCTTATGCACGCGATGGAACAGG-AAA 117
consensus_6663#2      -----------------AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAA 43
consensus_6663#1      CAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAA--AAGTGCCCAACAAATACGTCCCC 59
                                        *     *   *   *    * *  * * *   *   *     

consensus_6663#0      GGATTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGG---GCAGCAAAG-TATTTG 173
consensus_6663#2      GGATTCTGTTTTTTTTCGTTCGTTTAAAGCAAAAGCAAAGG---GCAGCAAAGGTATTTG 100
consensus_6663#1      CATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTG 119
                         * **   ***   *  *** ***    *     *   *   * **       ** **

consensus_6663#0      NATTTTCATTGTTTTGTTCGAGGGGGGAA---GGGAATAACATTCCTACTTGCA----GT 226
consensus_6663#2      A--TTTCATTGTTTTGTTCGACGGGGGGACAGGGCAATAACATTCCTACTTGCA----GT 154
consensus_6663#1      TTTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGC 179
                           * *   * * *  * *  *    *      ***  *** *     ****    * 

consensus_6663#0      T-TGTT-----TTGTCACCCACTTCCAACCGCATCAATCGCACAA-TCAA-TGACAATAG 278
consensus_6663#2      TATGTTA----TTGTCACCCACTTCCAACCGCATCAATCGCACAAATCAACTGACAATAG 210
consensus_6663#1      TCTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATT 239
                      * ****     ***  *  *  **       *  *  * *  *      * * ** *   

consensus_6663#0      AACGCAGCA-TAAAAAGCAACGCACACCTA-CCGCAC-GACCGCACCAATAGGAAA--GT 333
consensus_6663#2      AACGCAGCAGTAAAAAGCAACGCACACCTAACCGCACAGACCGCACCAATAGAGANAGGT 270
consensus_6663#1      AACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCAN 299
                      ****  * *   *      **   **   * ** *     *    ***            

consensus_6663#0      ATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGC 393
consensus_6663#2      ATTAAAATCCGAACGAAANCATGT--ATCCAATCTGNGATTTNTA--------------- 313
consensus_6663#1      GTAGAAGGC--AGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAG 357
                       *  **  *  *  ***    *    *    *     *                      

consensus_6663#0      AAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCT 453
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      GGCGCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA--------- 408
                                                                                  

consensus_6663#0      CGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAA 513
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      ACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTG 573
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      AGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTAT 633
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      GTGAGTAATAGTTTGAGTTAGGATGAGGATCAGCAGAGCATGTGTGTGTGTGTGTGGGTG 693
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      TGGAGTAAAACTAGTAGAGATACTTTACAATCAATTAGCTAGCGGTTTTGGTGGGAACCT 753
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      GTTGGACAGTTCAGCAGGTTCAACACTCTGGGAGTTAAAAGTGCCCAACAAATCCTCCCC 813
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      CACTTCCTCCCTTTCACCCCCTCGATTACGATATGGTTACGTGTGTGTGTGTTTAGAATG 873
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      TGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTG 933
consensus_6663#2      ------------------------------------------------------------
consensus_6663#1      ------------------------------------------------------------
                                                                                  

consensus_6663#0      CTCTGTTTGTATGTTTGCATACCTTTGGTGTGCCGGCGCTTGGCCGGCNATATTT 988
consensus_6663#2      -------------------------------------------------------
consensus_6663#1      -------------------------------------------------------