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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1109 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCGCGAACCTGCACGCGAAAGACAATAATGGGATGGGCAAGGACGGCCTGTCATCGAGCGGTGGCAGTTCCTCCACCACCACTACCACCACCAAACTGGTGTCTCGCCGGATGTCCGCCGGCACTAACAAACGGTCTGGCGGGGGTGCTGGTCCTTCCAGCGGTTCGAACAGTGCTGCCGGTGGACCAGGCCCGCCTGCCGGTGACGATGAACCGATCATGGTTTGAAATGCACAACGCAGGCGCCGCTTACACGGGTGGTGGGGAACGATGGCGCAGCAGGAACGAACAGCAGCGCAGTGGTCCTCGACTTGCAGCATCATCCTGCACCTGGGTCGCCCGATAGGAGGCGAATCGATCGATACGATCGAAAACGTGGTGTCATACAGCAGCACAGCAGGACGACAGCGGTGAACACGGAGTCACAAACACACACACAACTCTACAAGCTTAAGTTACGATGCATTAATCTCCCTTTCCGACGGAAAAGCG-AAAAAAAAGCATATAGCAACCAGTACGCTCCAGCGCTAAGTGTGTTGGTGTGCGTTTTTGGAGGGTGATTCGCGCGCGCAATCACAGTCAGTCAGCGATGAAACAAGCGATGCGTGGGTGCACCTGCGAACGAACCGTGCAACAGAAGCGCGACTGTGCGTTATTCGTGTTATATATTAATTAATTTATACCAATCGATTATATTAGCAGCAGTAGTTATAGCAACAGAAGTAGTAGTAGCAGCAGCAGCAGCAGTACGCGAAACGAAACTGACAAACGGTGTGAATGAATGTGGATATGATAAACATTTGAATACTCCTAATGCGTGTTGCGCATTTATTTAATCCTGTTCATCAGCCACAACAACAAACTCCACTTTCTACGAACGGCGAAAAGAACGTTAGGATTATAACGTGAAGTAGAATAACAAGAAGAAGAGCATATATTCTCGCAATTAGTTTTTGTTTTGCTTCGTTTTTGTGTGGCAAGCTTTTTTGGTAGAGGATGTTTGGCAAAATTCGTAAAATCAACGGACCCGGAACTTGACAGCGAGAAGCAGAACATTGTATTATGGAAACTAATTCGATTTTCA]
[+] EMBL BM631574 [CCGCCCACGCGTCCGCCCACGCGTCCGCGCGAACCTGCACGCGAAAGACAATAATGGGATGGGCAAGGACGGCCTGTCATCGAGCGGTGGCAGTTCCTCCACCACCACTACCACCACCAAACTGGTGTCTCGCCGGATGTCCGCCGGCACTAACAAACGGTCTGGCGGGGGTGCTGGTCCTTCCAGCGGTTCGAACAGTGCTGCCGGTGGACCAGGCCCGCCTGCCGGTGACGATGAACCGATCATGGTTTGAAATGCACAACGCAGGCGCCGCTTACACGGGTGGTGGGGAACGATGGCGCAGCAGGAACGAACAGCAGCGCAGTGGTCCTCGACTTGCAGCATCATCCTGCACCTGGGTCGCCCGATAGGAGGCGAATCGATCGATACGATCGAAAACGTGGTGTCATACAGCAGCACAGCAGGACGACAGCGGTGAACACGGAGTCACAAACACACACACAACTCTACAAGCTTAAGTTACGATGCATTAATCTCCCTTTCCGACGGAAAAGCG AAAAAAAAGCATATAGCAACCAGTACGCTCCAGCGCTAAGTGTGTTGGTGTGCGTTTTTGGAGGGTGATTCGCGCGCGCAATCACAGTCAGTCAGCGATGAAACAAGCGATGCGTGGGTGCACCTG ]
[+] EMBL BM626214 [ ccgCACGGAGTCACAA ACACACACAACTCTACAAGCTTAAGTTACGATGCATTAATCTCCCTTTGCGACGGAAAAGCGAAAAAAAAAGCATATAGCAACCAGTACGCTCCAGCACTAAGTGTGTTGGTGTGCGTTTTTGGAGAGTGATTCGCGCGCGCAATCACAGTCAGTCAGCGATGAAACAAGCGATGCGT GGTGCACCTGCGAACGAACCGTGCAACAGAAGCGCGACTGTGCGTTATTCGTGTTATATATTAATTAATTTATACCAATCGATTATATTAGCAGCAGTAGTTATAGCAACAGAAGTAGTAGTAGCAGCAGCAGCAGCAGTACGCGAAACGAAACTGACAAACGGTGTGAATGAATGTGGATATGATAAACATTTGAATACTCCTAATGCGTGTTGCGCATTTATTTAATCCTGTTCATCAGCCACAACAACAAACTCCACTTTCTACGAACGGCGAAAAGAACGTTAGGATTATAACGTGAAGTAGAATAACAAGAAGAAGAGCATATATTCTCGCAATTAGTTTTTGTTTTGCTTCGTTTTTGTGTGGCAAGCTTTTTTGGTAGAGGATGTTTGGCAAAATTCGTAAAATCAACGGACCCGGAACTTGACAGCGAGAAGCAGAACATTGTATTATGGAAACTAATTCGATTTTCA]
consensusID : consensus_6671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[CCGGCCTCCGCGGGAGGCGCGAGCGCAGCTGGCAGCGGTACGGGCGGCGGCGGACCGGGTAGCGGTGGTTCGATAGCATCGACGGCCACCAACAGTGGTGCTGCTGGCAAGCGTGCCAGCGACATCAATCTGAGCCACTCGATGATAACGCTCGCGACGACGTCCCACAGCCTGGGCGGCAGTACGACGAGCAACAGCAGCAGCAGCGGCGTCGGTGGTAGCTCCGGCAGTACCGGCAGCGGTAGCGACCTGCAGCGACAAAAGCCCATCAGCCGGAGCGTCTCCGGTGGTTACGAGGTGAGCCACCATGGCTCGACCGTGTCGGGCTCGGGGTCCGGTTCGACGCATGCATCGACCAACCACCGGATACTGATACAGGCGTCGTCAGCGCTACCGATCACGCCCGGTGCCACCATCGCTGCCTCCCCGTCCGGGTCCGGCTCCGGTGCTACGTCCACGTCCGCCTCCAGTTCTTCCATCAACTCCGCGAACCTGCACGCGAAAGACAATAATGGGATGGGCAAGGACGGCCTGTCATCGAGCGGTGGCAGTTCCTCCACCACCACCACCACCACCAAACTGGTGTCTCGCCGGATGTCCGCCGGCACTAACAAACGGTCTGGCGGGGGTGCTGGTCCTTCCGGCGGTTCGAACAGTGCTGCCGGTGGACCAGGCCCGCCTGCCGGTGACGATGAACCGATC]
[+] EMBL BM618103 [CCGGCCTCCGCGGGAGGCGCGAGCGCAGCTGGCAGCGGTACGGGCGGCGGCGGACCGGGTAGCGGTGGTTCGATAGCATCGACGGCCACCAACAGTGGTGCTGCTGGCAAGCGTGCCAGCGACATCAATCTGAGCCACTCGATGATAACGCTCGCGACGACGTCCCACAGCCTGGGCGGCAGTACGACGAGCAACAGCAGCAGCAGCGGCGTCGGTGGTAGCTCCGGCAGTACCGGCAGCGGTAGCGACCTGCAGCGACAAAAGCCCATCAGCCGGAGCGTCTCCGGTGGTTACGAGGTGAGCCACCATGGCTCGACCGTGTCGGGCTCGGGGTCCGGTTCGACGCATGCATCGACCAACCACCGGATACTGATACAGGCGTCGTCAGCGCTACCGATCACGCCCGGTGCCACCATCGCTGCCTCCCCGTCCGGGTCCGGCTCCGGTGCTACGTCCACGTCCGCCTCCAGTTCTTCCATCAACTCCGCGAACCTGCACGCGAAAGACAATAATGGGATGGGCAAGGACGGCCTGTCATCGAGCGGTGGCAGTTCCTCCACCACCACCACCACCACCAAACTGGTGTCTCGCCGGATGTCCGCCGGCACTAACAAACGGTCTGGCGGGGGTGCTGGTCCTTCCGGCGGTTCGAACAGTGCTGCCGGTGGACCAGGCCCGCCTGCCGGTGACGATGAACCGATC]
consensusID : consensus_6671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[GAGGCAAGAATNCGGCACGAGGCGAAAAGAACGTTAGGATTATANCCGTGAAGTAGAATAACAAGAAGAAGAGCATATATTCTCGCAATTAGTTTTTGTTTTGCTTCGTTTTTGTGTGGCAAGCTTTTTTGGTAGAGGATGTTTGGCAAAATTCGTAAAATCAACGGACCCGGAACTTGACAGCGAGAAGCAGAAAATTGTATTATGGAAACTAAATTCAAATTTTCATCACGACTAAAATACACACGACTCAGCAGCAGCAACGCGCNGCAGTCAANCTAGGGGAAAAAACGCCTGAAAGGGTTGAGTTGGGGTGAACGGAAAAGCCACAACCAACAAGGCCAACAATGCCCAACTTCACACGGTTCCCACAAAGTTTCGGTCCTCAACNGGCACGGCAATNCACACTCGTTGCCCTTAAAGNGTCAAACAAACCTTCATTACAGGAACACATTTACCCCTAGGAAAACTGGNTTACTCACAGCCCAANACATGNTC]
[+] EMBL BX468884 [GAGGCAAGAATNCGGCACGAGGCGAAAAGAACGTTAGGATTATANCCGTGAAGTAGAATAACAAGAAGAAGAGCATATATTCTCGCAATTAGTTTTTGTTTTGCTTCGTTTTTGTGTGGCAAGCTTTTTTGGTAGAGGATGTTTGGCAAAATTCGTAAAATCAACGGACCCGGAACTTGACAGCGAGAAGCAGAAAATTGTATTATGGAAACTAAATTCAAATTTTCATCACGACTAAAATACACACGACTCAGCAGCAGCAACGCGCNGCAGTCAANCTAGGGGAAAAAACGCCTGAAAGGGTTGAGTTGGGGTGAACGGAAAAGCCACAACCAACAAGGCCAACAATGCCCAACTTCACACGGTTCCCACAAAGTTTCGGTCCTCAACNGGCACGGCAATNCACACTCGTTGCCCTTAAAGNGTCAAACAAACCTTCATTACAGGAACACATTTACCCCTAGGAAAACTGGNTTACTCACAGCCCAANACATGNTC]
consensusID : consensus_6671#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[CCGCGGACGCGTGGGGGTGATTCGCGCGCGCAATCACAGTCAGTCAGCGATGAAACAAGCGATGCGTGGTGCACCTGCGAACGAACCGTGCAACAGAAGCGCGACTGTGCGTTATTCGTGTTATATATTAATTAATTTATACCAATCGATTATATTAGCAGCAGTAGTTATAGCAACAGAAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGTACGCGAAACGAAACTGACAAACGGTGTGAATGAATGTGGATATGATAAACATTTGAATACT]
[+] EMBL BM595677 [CCGCGGACGCGTGGGGGTGATTCGCGCGCGCAATCACAGTCAGTCAGCGATGAAACAAGCGATGCGTGGTGCACCTGCGAACGAACCGTGCAACAGAAGCGCGACTGTGCGTTATTCGTGTTATATATTAATTAATTTATACCAATCGATTATATTAGCAGCAGTAGTTATAGCAACAGAAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGTACGCGAAACGAAACTGACAAACGGTGTGAATGAATGTGGATATGATAAACATTTGAATACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6671#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGCGAACCTGCACGCGAAAGACAATAATGGGAT 60
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 GGGCAAGGACGGCCTGTCATCGAGCGGTGGCAGTTCCTCCACCACCACTACCACCACCAA 120
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 ACTGGTGTCTCGCCGGATGTCCGCCGGCACTAACAAACGGTCTGGCGGGGGTGCTGGTCC 180
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 TTCCAGCGGTTCGAACAGTGCTGCCGGTGGACCAGGCCCGCCTGCCGGTGACGATGAACC 240
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 GATCATGGTTTGAAATGCACAACGCAGGCGCCGCTTACACGGGTGGTGGGGAACGATGGC 300
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 GCAGCAGGAACGAACAGCAGCGCAGTGGTCCTCGACTTGCAGCATCATCCTGCACCTGGG 360
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 TCGCCCGATAGGAGGCGAATCGATCGATACGATCGAAAACGTGGTGTCATACAGCAGCAC 420
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 AGCAGGACGACAGCGGTGAACACGGAGTCACAAACACACACACAACTCTACAAGCTTAAG 480
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ---------------------------------------------------------GAG 3
consensus_6671#1 --------------CCGGCCTCCGCGGGAGGCGCGAGCGCAGCTGGCAGCGGTACGGGCG 46
consensus_6671#0 TTACGATGCATTAATCTCCCTTTCCGACGGAAAAGCGAAAAAAAAGCATATAGCAACCAG 540
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 GCAAGAATNCGGCACGAGGCGAAAAGAACGTTAGGATTATANCCGTGAAGTAGAATAACA 63
consensus_6671#1 GCGGCGGACCGGGTAGCGGTGGTTCGATAGCATCGACGGCCACCA-ACAGTGGTGCTGCT 105
consensus_6671#0 TACGCTCCAGCGCTAAGTGTGTTGGTGTGCGTTTTTGGAGGGTGATTCGCG----CGCG- 595
consensus_6671#3 ----------------------CCGCGGACGCGT---GGGGGTGATTCGCG----CGCG- 30
consensus_6671#2 AGAAGAAGAGCATATATTCTCGCAATTAGTTTTTGTTTTGCTTCGTTTTTG----TGTGG 119
consensus_6671#1 GGCAAGCGTGCCAGCGACATCAATCTGAGCCACTCGATGATAACGCTCGCGACGACGTCC 165
* * * *
consensus_6671#0 CA-ATCACAGTCAGTCA-GCGATGAAACAAGCGATGCGTGGGTGCACCTGCGAACGAACC 653
consensus_6671#3 CA-ATCACAGTCAGTCA-GCGATGAAACAAGCGATGCGTGG-TGCACCTGCGAACGAACC 87
consensus_6671#2 CA-AGCTTTTTTGGTAG-AGGATGTTTGGCAAAATTCGTAAAATCAACGGACCCGGAACT 177
consensus_6671#1 CACAGCCTGGGCGGCAGTACGACGAGCAACAGCAGCAGCAGCGGCGTCGGTGGTAGCTCC 225
** * * * ** * * * * * * * *
consensus_6671#0 GTGCAAC-AGAAGCGCGACTGTGCGTTATTCGTGTTATATATTAATTAATTTAT-ACCAA 711
consensus_6671#3 GTGCAAC-AGAAGCGCGACTGTGCGTTATTCGTGTTATATATTAATTAATTTAT-ACCAA 145
consensus_6671#2 TGACAGCGAGAAGCAGAAAATTGTATTATGGAAACTAAATTCAAATT--TTCATCACGAC 235
consensus_6671#1 -GGCAGTACCGGCAGCGGTAGCGACCTGCAGCGACAAAAGCCCATCAGCCGGAGCGTCTC 284
** * * * * * *
consensus_6671#0 TCGATTATA------TTAGCAGCAGTAGT-TATAGCAACAGAAGTAGTAGTAG----CAG 760
consensus_6671#3 TCGATTATA------TTAGCAGCAGTAGT-TATAGCAACAGAAGTAGTAGTAG----CAG 194
consensus_6671#2 TAAAATACACACGACTCAGCAGCAGCAACGCGCNGCAGTCAANCTAGGGGAAA----AAA 291
consensus_6671#1 CGGTGGTTACGAGG-TGAGCCACCATGGCTCGACCGTGTCGGGCTCGGGGTCCGGTTCGA 343
* * *** * * * *
consensus_6671#0 CAGCAGCAGCAG-----------TACGCGAAACGAAACTGACAAACGGTGTGAATGAATG 809
consensus_6671#3 CAGCAGCAGCAGC--AGCAGCAGTACGCGAAACGAAACTGACAAACGGTGTGAATGAATG 252
consensus_6671#2 CGCCTGAAAGGGTTGAGTTGGGGTGAACGGAAAAGCCACAACCAACAAGGCCAACAATGC 351
consensus_6671#1 CGCATGCATCGACCAACCACCGGATACTGATACAGGCGTCGTCAGCGCTACCGATCACGC 403
* * * * * * * * *
consensus_6671#0 TGGATATGAT-AAACATTTGA-ATACTCCTAATGC---GTGTTGCGCATTTATTTAATCC 864
consensus_6671#3 TGGATATGAT-AAACATTTGA-ATACT--------------------------------- 277
consensus_6671#2 CCAACTTCAC-ACGGTTCCCACAAAGTTTCGGTCC---TCAACNGGCACGGCAATNCACA 407
consensus_6671#1 CCGGTGCCACCATCGCTGCCTCCCCGTCCGGGTCCGGCTCCGGTGCTACGTCCACGTCCG 463
* * * *
consensus_6671#0 TGTTCATCAGCCACAACAACAA-ACTCCACTTTCTACGAACGGCGAAAAGAACGTTAGGA 923
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 CTCGTTGCCCTTAAAGNGTCAA-ACAAACCTTCATTACAGGAACACATTTACCCCTAGGA 466
consensus_6671#1 CCTCCAGTTCTTCCATCAACTCCGCGAACCTGCACGCGAAAGACAATAATGGGATGGGCA 523
consensus_6671#0 TTATAACGTGAAGTAGAATAACAAGAAGAAGAGCATATATTCTCGCAATTAGTTTTTGTT 983
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 AAACTGGNTTACTCACAGCCCAANACATGNTC---------------------------- 498
consensus_6671#1 AGGACGGCCTGTCATCGAGCGGTGGCAGTTCCTCCACCACCACCACCACCACCAAACTGG 583
consensus_6671#0 TTGCTTCGTTTTTGTGTGGCAAGCTTTTTTGGTAGAGGATGTTTGGCAAAATTCGTAAAA 1043
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 TGTCTCGCCGGATGTCCGCCGGCACTAACAAACGGTCTGGCGGGGGTGCTGGTCCTTCCG 643
consensus_6671#0 TCAACGGACCCGGAACTTGACAGCGAGAAGCAGAACATTGTATTATGGAAACTAATTCGA 1103
consensus_6671#3 ------------------------------------------------------------
consensus_6671#2 ------------------------------------------------------------
consensus_6671#1 GCGGTTCGAACAGTGCTGCCGGTGGACCAGGCCCGCCTGCCGGTGACGATGAACCGATC- 702
consensus_6671#0 TTTTCA 1109
consensus_6671#3 ------
consensus_6671#2 ------
consensus_6671#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||