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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence
[AACAAGCCACGGCTACTTTCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGAATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCGGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCAGAGATTAATCTGCTAAACGTGATCGGTCCCAGCGCGGTCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCAGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTATTGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGC-AGTGTGGAGGGCGAAATCTAAACGAACAGGAGGAGGCAACAGATCGATGTGTACCATGTCGATGGTCAGCTGCAGCACATCGT-CATGG-AGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGC]
[+] EMBL CNS08S6E [AACAAGCCACGGCTACTTTCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGAATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCGGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCAGAGATTAATCTGCTAAACGTGATCGGTCCCAGCGCGGTCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCAGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTATTGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGC AGTGTGGAGGGCGAAATCTAAACGAACAGGAGGAGGCAACAGATCGATGTGTACCATGTCGATGGTCAGCTGCAGCACATCGT CATGG AGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGC]
[+] EMBL BM592921 [ ccgGCCACGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGGATTGGTAATACAAACGAATGGTGAAATGGCTACCATAACGCT CGCGGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAAGCTGGAGCTGGTGCCCGCCAAGGACTTCCCAAGCGCGGTGTGTGAGATGTGTATCGCGCTGCTTCACGATTTCGACACGCTGTACCAGAACGTGCATGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAGAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTATACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATTGTGCTGGAGGATGGCAAGTGTGGAGGGCG AATCT AACGAACAGGAGGAGGC ACAGATCGACGTGTACCATGTCGATGGTCAGCTGCAGCACTTCGTCCATGGAAGGGTGGCACTTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACAC ]
consensusID : consensus_6673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[CCCGCTGACTTTACACACACACACACACATACCCTTAGGGGGGTAATTAATACTACAGCGTTCGATTACAGAATCTTCACGAAGCTCACGCCCGGCTTCGGGTGTATTGCTCGCATGTGCAGCTGATAGTCCTGCCGCTGGGAGAACAGCTTGTGGCAAATCGTACACTTGATGCCAAAGTTTTCATTGCTTATTCTGTGCACCTCGTACTCGTGCTTCTGGTACTGGAGCTTCGTGCGGTAGGACATGTCGCACAGGTTGCACTGAAACCGCTGGCCCTCGCTCGTGATGGTGACGGCCGAGCCCCCCGTCCGGGCCGGTTGGCTTTGGTTGTTGCTGCTGGCAACGGCGACACCATCCTGCGCGGGTGCCTTCGTGCAGCTGTGGTTGTAAAAGTTGGTTAGCTCGACAAACAGATTGCCGCAGGGGGACCAACGGTACAGATGATGGTTCGTCGGAGCAGCGGCCGTGTCGAGCTGCTGCACTTTCGGTCGTTGCATCTGGGACGACGATGGGCGCTGGCTGGCCGGTTCTCCGTTCAGCATCCGGGTTGGCGTGCCCGTCGGAACCAGTTGATAGGAGACTGTCGTGGATTTTTTAGAATAATGAGCCGCCCCAGCAGTTGCATTCGCTGCGTTGGTTCGCTTTCTACTCTGCATCTGCGAACCGTGGTTCGGGATGGAA]
[+] EMBL CNS08KTW [CCCGCTGACTTTACACACACACACACACATACCCTTAGGGGGGTAATTAATACTACAGCGTTCGATTACAGAATCTTCACGAAGCTCACGCCCGGCTTCGGGTGTATTGCTCGCATGTGCAGCTGATAGTCCTGCCGCTGGGAGAACAGCTTGTGGCAAATCGTACACTTGATGCCAAAGTTTTCATTGCTTATTCTGTGCACCTCGTACTCGTGCTTCTGGTACTGGAGCTTCGTGCGGTAGGACATGTCGCACAGGTTGCACTGAAACCGCTGGCCCTCGCTCGTGATGGTGACGGCCGAGCCCCCCGTCCGGGCCGGTTGGCTTTGGTTGTTGCTGCTGGCAACGGCGACACCATCCTGCGCGGGTGCCTTCGTGCAGCTGTGGTTGTAAAAGTTGGTTAGCTCGACAAACAGATTGCCGCAGGGGGACCAACGGTACAGATGATGGTTCGTCGGAGCAGCGGCCGTGTCGAGCTGCTGCACTTTCGGTCGTTGCATCTGGGACGACGATGGGCGCTGGCTGGCCGGTTCTCCGTTCAGCATCCGGGTTGGCGTGCCCGTCGGAACCAGTTGATAGGAGACTGTCGTGGATTTTTTAGAATAATGAGCCGCCCCAGCAGTTGCATTCGCTGCGTTGGTTCGCTTTCTACTCTGCATCTGCGAACCGTGGTTCGGGATGGAA]
consensusID : consensus_6673#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[AATGCCCGAGGGTNAGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGGATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCAGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAAGCTGGAGCTGGTGCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGCTGNGAGGTGTACGAACCGCCGCCGGCTGGTGCTGATCGACACCGGGAACAACGTGGTGGCAGGTGAACCACGGGACGCACTCAGACTTGCTGCCTGGNNNCGCACTGGCTCACGCTGCTGCGACGGGCGAANTCTAACGAACAGCGCACGGCANGCACAGATCGACTGCTGTACCAATGNTCCNACTCGCNTCCACGCTGCCACGCC]
[+] EMBL AL930463 [AATGCCCGAGGGTNAGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGGATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCAGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAAGCTGGAGCTGGTGCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGCTGNGAGGTGTACGAACCGCCGCCGGCTGGTGCTGATCGACACCGGGAACAACGTGGTGGCAGGTGAACCACGGGACGCACTCAGACTTGCTGCCTGGNNNCGCACTGGCTCACGCTGCTGCGACGGGCGAANTCTAACGAACAGCGCACGGCANGCACAGATCGACTGCTGTACCAATGNTCCNACTCGCNTCCACGCTGCCACGCC]
consensusID : consensus_6673#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[CCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGAGGGCGAATCTAACGAACAGGAGGAGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGCAGATGCAGAGTAG]
[+] EMBL CNS08KTV [CCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGAGGGCGAATCTAACGAACAGGAGGAGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGCAGATGCAGAGTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6673#0 -----AACAAGCCACGGCTACTTTCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCA 55
consensus_6673#3 ------------------------------------------------------------
consensus_6673#2 AATGCCCGAGGGTNAGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCA 60
consensus_6673#1 -------CCCGCTGACTTTACACACACACACACACATACCCTTAGGGGGGTAATTAAT-A 52
consensus_6673#0 CGGAATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCA-GCGCGGAC 114
consensus_6673#3 ------------------------------------------------------------
consensus_6673#2 CGGGATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCA-GCGCAGAC 119
consensus_6673#1 CTACAGCGTTCGATTACA-GAATCTTCACGAAGCTCACGCCCGGCTTCGGGTGTATTGCT 111
consensus_6673#0 TGTACGAAGTTTTGCCGCTTCTGTCTGTCAGAGATTAATCTGCTAAACGTGATCGGTCCC 174
consensus_6673#3 ---------------------------------------------------------CCC 3
consensus_6673#2 TGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCC 179
consensus_6673#1 CGCATGTGCAGCTGATAGTCCTGCCGCTGGGAGAACAGCTTGTGGCAAATCGT-ACACTT 170
*
consensus_6673#0 AGCGCGGTCGAACAAGAATCTCAC-GCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAA 233
consensus_6673#3 AGCGCGGCCGAACAAGAATCTCAC-GCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAA 62
consensus_6673#2 AGCGCGGCCGAACAAGAATCTCAC-GCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAA 238
consensus_6673#1 GATGC-------CAAAGTTTTCATTGCTTATTCTGTGCACCTCGTACTCGTGCTTCTGGT 223
** *** * *** ** * * * * ** ** ****
consensus_6673#0 GCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCT 293
consensus_6673#3 GCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCT 122
consensus_6673#2 GCTGGAGCTGGTGCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCT 298
consensus_6673#1 ACTGGAGCTTCGTGCGGT--AGGACATGTCGCACAGGTTGCACTGAAACCGC-TGGCCCT 280
******** * * ***** * ** * * ** * * * * ** **
consensus_6673#0 GCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCAGTACGCGCTG-CGGT 352
consensus_6673#3 GCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTG-CGGT 181
consensus_6673#2 GCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTG-CGGT 357
consensus_6673#1 CGCTCGTGATGGTGACG-GCCGAGCCC---CCCGTCCGG--GCCGGTTGGCTTTGGTTGT 334
* *** *** ** * ** * * ** ** ** ** ** **
consensus_6673#0 TGCTTCTGGAGACGCAGAAAAGCGAGGACGTATTGTCGTCGATTCCGGTGAGCACGATCG 412
consensus_6673#3 TGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCG 241
consensus_6673#2 TGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCG 417
consensus_6673#1 TGCTGCTGGCAACG--GCGACACCATCCTGCGCGGGTGCC--TTCGTGCAGCTGTGGTTG 390
**** **** *** * * * * * * * * *** * * * *
consensus_6673#0 AACCGAACCTGGT---GGAGGTGTACGAACCGCCGCCGG-TGGTGCTGATCGACACCGGG 468
consensus_6673#3 AACCGAACCTGGT---GGAGGTGTACGAACCGCCGCCGG-TGGTGCTGATCGACACCGGG 297
consensus_6673#2 AACCGAACCTGGCT-GNGAGGTGTACGAACCGCCGCCGGCTGGTGCTGATCGACACCGGG 476
consensus_6673#1 TA--AAAGTTGGTTAGCTCGACAAACAGATTGCCGCAGG--GGGACCAA-CGGTACAGAT 445
* ** *** * ** * ***** ** ** * * ** ** *
consensus_6673#0 AACAACGTGGTGG-AGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGA 527
consensus_6673#3 AACAACGTGGTGG-AGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGA 356
consensus_6673#2 AACAACGTGGTGGCAGGTGAACCACGGGACGCACTCAGACTTGCTGCCTGGNNNCGCACT 536
consensus_6673#1 GATGGTTCGTCGGAGCAGCGGCCGTGTCGAGCTGCTGCACTTTCGG--TCGTTGCATCTG 503
* * ** * * * * * * *
consensus_6673#0 GGGCGAAA-TCTAAACGAACAGGAGGAGGCAACAGATCGATGTGTACCATGTCGATGGTC 586
consensus_6673#3 GGGCGAA--TCTAA-CGAACAGGAGGAGG------------------------------- 382
consensus_6673#2 GGCTCAC--GCTGCTGCGACGGGCGAAN-------------------------------- 562
consensus_6673#1 GGACGACGATGGGCGCTGGCTGGCCGGTTCTCCGT----------------TCAGCATCC 547
** * * **
consensus_6673#0 AGCTGCAGCACATCGTCATGGAGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCAC 646
consensus_6673#3 ------------------------GTGGCACGTACATCGATTTACAGCCTTACCGGCCAC 418
consensus_6673#2 -------------------------TCTAACGAACAGCG---CACGGC------ANGCAC 588
consensus_6673#1 GGGTTGGCGTGCCCGTCGGAACCAGTTGATAGGAGACTGTCGTGGATTTTTTAGAATAAT 607
* * * * * *
consensus_6673#0 CGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATG 706
consensus_6673#3 CGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATG 478
consensus_6673#2 --AGATCGACTGCTGTACCAATGNTCCNACTCGCNTCCACGCTGCCACGCC--------- 637
consensus_6673#1 GAGCCGCCCCAGCAGTTGCATTCGCTGCGTTGGTTCGCTTTCTACTCTGCATCTGCGAAC 667
* * * ** ** * * * *
consensus_6673#0 TACTGAACACTTCCATCCCGAACCACGGTTCGC------------- 739
consensus_6673#3 TACTGAACACTTCCATCCCGAACCACGGTTCGCAGATGCAGAGTAG 524
consensus_6673#2 ----------------------------------------------
consensus_6673#1 CGTGGTTCGGGATGGAA----------------------------- 684
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||