These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 974 fasta sequence [GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGCAAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAAAACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACATAGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTTCCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACTACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCC-GCTTTTTCCAATGCAAGAAGAAA-ATCGGGATAATCACAGCATTATGCA-GTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTT-TGTTTTGC-TACGCTTTTCTTTTTTTTAATTCTT-GTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCT-GTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGT-GTTGCTGTTCGATGGAAAAGAGGGTTATA-TAGTT-TATGATGCATCATTTCTT-GTATAATGCAGCACAGTCGCATCGACTTATGTANTATACTCTCTCTTTATTCTTTTCATTTTTNTCATCTCNGGGATTGAATAGTGTTAAAGAAGTTATANNTCCAGCGCATTTGACGCTGTTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGGCAAGCGTAGGGTTACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCACGCGCTATCATAAAGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNCGGTNACCTGGGTANCTCAAAACGCTTC] [+] EMBL BM618225 [GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGCAAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAAAACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACATAGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTTCCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACTACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCC GCTTTTTCCAATGCAAGAAGAAA ATCGGGATAATCACAGCATTATGCA GTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTT TGTTTTGC TACGCTTTTCTTTTTTTTAATTCTT GTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCT GTTCGTTCGGA ] [+] EMBL BM621193 [ cCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAAAACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACATAGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTTCCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACTACTACCCACAAATCTTTCGTAATTTTTTGTTGTTTTAAGCTAGTTTTCCTCC GCTTTTTCCAATGCAAGAAGAAA ATCGGGATAATCACAGCATTATGCA GTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTT TGTTTTGC TACGCTTTTCTTTTTTTTAATTCTT GTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCT GTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGT GTTGCTGTTCGATGGAAAAGAGGGTTATA TAGTT TATGATGCATCATTTCTT GTATAATGCAGCACAGTCGCATCGACTT ] [+] EMBL AL930417 [ ccgaggTTTGTTG TTTAAGCTAGTTTTCCTCCGGCTTTTTCCAATGCAAGAAGAAACATCGGGATAATCACAGCATTATGCACGTAGCAACGAAACTTGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTTCTGTNTTGCGTACGCTTTTCTTTTTTTTAATTCTTGGTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTAATGCAATGAAATCGCCACAATCTCTTTCTGGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGGTTGCTGGTCGATGGAAAAGAGGGTTATACTAGTTCTATGATGCATCATTTCTTGGTATAATGCAGCACAGTCGCATCGACCTATGTANTATACTCTCTCTTTATTCTTTTCATTTTTNTCATCTCNGGGATTGAATAGTGTTAAAGAAGTTATANNTCCAGCGCATTTGACGCTGTTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGGCAAGCGTAGGGTTACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCACGCGCTATCATAAAGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNCGGTNACCTGGGTANCTCAAAACGCTTC] consensusID : consensus_6677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGATTAATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCATTTCTTGTATAATGCAGCACAGTCGCATCGACTTTGTTTTTTTTTTTTCTTTTCATTTTTTTTTTGGGATTGAATAGTGTTAAAGAAGTTTTTCCAGCGCATTGAGTGTTTTGTCATTGCGTGTTTTCTTTTTGCAGTGTAATTAGCTTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAATTCTCACGTTATGGTTCAGTATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGTTCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAGAAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTAAGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAATCCTTAACGCTGGTCA] [+] EMBL BM600656 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGATTAATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTACCCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCATTTCTTGTATAATGCAGCACAGTCGCATCGACTTTGTTTTTTTTTTTTCTTTTCATTTTTTTTTTGGGATTGAATAGTGTTAAAGAAGTTTTTCCAGCGCATTGAGTGTTTTGTCATTGCGTGTTTTCTTTTTGCAGTGTAATTAGCTTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAATTCTCACGTTATGGTTCAGTATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGTTCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAGAAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTAAGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAATCCTTAACG ] [+] EMBL BX617441 [ TTAGCTTTAGTTTAGGGTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTTTAAGTCAAAATTCTCACGTTATGGTTCAGTATGTGTGCTG AAAAGCATGCGTGCACGCGACTGTTTTCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACGGCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGCCAATGCGAACTTGCTTCCTTGGCAGAAGAAGAGCCGGGGAGCGTACTGTATCTTTCAAGGCAAGAATGAAACCCTTCGCGGGTTTGTAAGGAGCGTTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTTAAAACTCATAATCCTTAACGCTGGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6677#0 GGTGAAGCGATCGTGACGGGGGCAGGGGACGAAACGCTGCGCTTCTGGAACGTCTTCAGC 60 consensus_6677#1 ------------------------------------------------------------ consensus_6677#0 AAGGCACGGTCGCAGAAGGAAAACAAGAGCGTGCTGAATCTGTTCACCAACATTCGGTAA 120 consensus_6677#1 ------------------------------------------------------------ consensus_6677#0 AACCCTTCGCGACCTGGAGCTCGCGCAAAGCCCGCGGACGGGAAAGGGATATCTGTACAT 180 consensus_6677#1 ------------------------------------------------------------ consensus_6677#0 AGTGTCTAGCATCGAAGCGTATAGCGATTTTAAGCGAATGCGTGTATGTGTGTGGTTTTT 240 consensus_6677#1 ------------------------------------------------------------ consensus_6677#0 CCTTTTTGCTATAGGAATATTTTATATTCTATATATATTTTCATTCCCGTTTTTTGCACT 300 consensus_6677#1 ----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGTGAT 32 * * * * * ** * * * consensus_6677#0 ACTACCCACAAATCTTTCGTAATTTTTTGTTGTT---TTAAGCTAGTTTTCCTCCGCTTT 357 consensus_6677#1 TAATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTT 92 * * ** * *** * ** **** * ** * * ** * ** consensus_6677#0 TTCCAATGCAAGAAGAAAATCG---GGATAATCACAGCATTATGCAGTAGCAACGAAACT 414 consensus_6677#1 ACCCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGT--TTATGA---- 146 **** * * * * * * ** **** *** * ** consensus_6677#0 TGCGCGTCTATTAGCGAAACAAAACATAATTAAAGCTTCTTTTTTGTTTTGCTACGCTTT 474 consensus_6677#1 TGCATCATTTCTTGTATAATGCAGCACAGTCGCATCGACTTTGTTTTTTTTTTTTCTTTT 206 *** * * * ** * ** * * * * **** ** **** * *** consensus_6677#0 TCTTTTTTTTAATTCTTGTAAAATATTTTTGTTATACTTTCTTTGCTTTCTTAGTGATTA 534 consensus_6677#1 CATTTTTTTT--TTGGGATTGAATAGTGTTAAAGAAGTTTTTCCAGC------GCATTGA 258 ******** ** * **** * ** * *** * * * * consensus_6677#0 ATGCAATGAAATCGCCACAATCTCTTTCTGTTCGTTCGGAGAAGCATCACACCTCGTTAC 594 consensus_6677#1 GTGTTTTGTCATTGC-GTGTTTTCTTTTTGC-----------AGTGTAA-------TTAG 299 ** ** ** ** * ***** ** ** * * *** consensus_6677#0 CCAAAACGCGGGTGTTGCTGTTCGATGGAAAAGAGGGTTATATAGTTTATGATGCATCAT 654 consensus_6677#1 CTTTAGTTTAGG-GTTAGGTTTAGATAGGCCCTACATTTTTTTTGTCTGTT-TAAGTCAA 357 * * ** *** ** *** * * ** * * ** * * * *** consensus_6677#0 TTCTTGTATAATGCAGCACAGTCGCATCGACTTATGTANTATACTCTCTCTTTATTCTTT 714 consensus_6677#1 AATTCTCACGTTATGGTTCAGT-ATGCGTGCTGAAAAAGCATGCGTGCACGCGACTGTGT 416 * * * * **** ** * * ** * * * * * * * consensus_6677#0 TCATTTTTNTCATC--TCNGGGATTGAATAGTGTTA--AAGAAGTTATANNT---CCAGC 767 consensus_6677#1 TCAAATTGCATAGGAATAAATGATTAAGGCGCATAATCAATCATTCACCACTTTGCTACG 476 *** ** * * **** * * * * ** * * * * * * consensus_6677#0 GCATTTGACGCTGTTATTGTCATTGGGCCGNTAGGTATCATATCACCTATTCTTCAAGGG 827 consensus_6677#1 GCTTCCCCCCCCCCCCCCTCCTTTGGTTTGGTGAGC-CAATGCGAACT-TGCTTCCTTGG 534 ** * * * * **** * * * ** * ** * **** ** consensus_6677#0 CAAGCGTAGGGTTACACTTTTTAANGNCTACTACTAAGAATATAATCANGCGCGCTCTCA 887 consensus_6677#1 CAGAAGAAGAGCCGGGGAGCGTACTGTAT-CTTTCAAGGCAAGAATGAAAC---CCTTCG 590 ** * ** * ** * * ** *** * *** * * * ** consensus_6677#0 CGCGCTATCATAAAGCAACTTACNGGGCCCCCTTAACCAATATCCACACATCCCNTCTNC 947 consensus_6677#1 CGGGTTTGTAAGGAGCG-TTTGCGGCATTTAATTGCAAAAGTTTTGCATTGTACGCGTTT 649 ** * * * *** ** * * ** ** * ** * * consensus_6677#0 GGTNACCTGGGTANCTCAAAACGCTTC- 974 consensus_6677#1 AA-AACTCATAATCCTTAACGCTGGTCA 676 ** ** ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||