These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence [ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCGGACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGGGCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGG-CGTGTGTTTCACACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCGCAACCAGATACATT] [+] EMBL AL696276 [ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCGGACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGGGCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGG CGTGTGTTTCACACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCGCAACCAGATACATT] [+] EMBL BX614422 [ CAGATTTGTTGATGTTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGG CGCGGCTTCTCCGATTGGCCGTGTGTTTCACAC GTCACCAT TATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAA GCAAAACTGTTT GAAAACAATACACGCAAA GCGAATT GCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCC ] consensusID : consensus_6684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 677 fasta sequence [ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC-GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGACCATTGAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTTATCCCTTTTAN] [+] EMBL AL692278 [ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGCGGGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTNTTTTCCGTTCGGGATGACCATTGAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTTATCCCTTTTAN] [+] EMBL BX618810 [ TCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCCATATACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCG ] [-] EMBL AGA281721 [ ATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGGCCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGAGCA TGAATTCAG TTTGA TGAAGTT GGGTTAGGATGGAGTGGTAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6684#0 ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCG 60 consensus_6684#1 ATCCCCCGAGGTTATCCG-ATTGGCCGTGTGTTTCA---CACGTCACCATTATTTGTGTA 56 *** * **** *** * * ** * * ** * ** * * * * ** consensus_6684#0 GACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGG 120 consensus_6684#1 AGCAAATCCAC-CAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTG 115 ** * * * ** ** ** * ** ** * ** *** ** * consensus_6684#0 GCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTG 180 consensus_6684#1 AAAAC-AATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAA------CACTG 168 ** * ** ** * ** * * * ** * * ** consensus_6684#0 TGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCG 240 consensus_6684#1 GGTAG-------------TGATGCATCGCCGAATATATATAAAAAA-ACGGTATGGAAAG 214 ** * ** * * *** * * ***** * *** * * consensus_6684#0 CACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTT---CTCCGATTGGCGTGTGTTTCA 297 consensus_6684#1 GAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCA 274 * ** * * ** ** * **** ** * **** * ** consensus_6684#0 CACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATT 357 consensus_6684#1 GATAGTCG----ATAACAGTACAATTCAATGAGGTAGAAGGGAGATA-AATTTTCGGATT 329 * **** *** ** ** *** **** *** ** **** *** consensus_6684#0 CGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAA 417 consensus_6684#1 ATAAAAGAAATTCTGAAGAAGCGGAAATAAATA-ACGGAACGGCGGGTGTGCAATG--AA 386 ** ** ** *** **** *** ** *** * ** ** ** consensus_6684#0 AATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGG 477 consensus_6684#1 CAGTAATTCAAAGC-----GGT-GTGATG-ATTGC--GATAGACATTAATAACA--ATGT 435 * * **** * *** ****** ** * *** * * ** *** *** consensus_6684#0 AAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTA 537 consensus_6684#1 ATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGG---GATGACCATTGAATTCAGTTT- 491 * ** ** * * * * * ** * * * ** * consensus_6684#0 TGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACA 597 consensus_6684#1 TGACTGAA---TTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTA 548 ** ** * * ** * ** * * * * * consensus_6684#0 TTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAA 657 consensus_6684#1 GTNNTCGTCTANGACAG--TCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAAC 606 * * ** ** ** * *** *** * * * ****** ** consensus_6684#0 CATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGT-GTGCCA 716 consensus_6684#1 AATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTT 666 ** * * * * ***** *** * * **** * *** * ** consensus_6684#0 ACCGCAACCAGATACATT 734 consensus_6684#1 ATCCCTTTTAN------- 677 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||