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Anopheles gambiae
cluster # 6684 cluster # 6684       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6684#0 length = 734 sequences # 2  
consensus_6684#1 length = 677 sequences # 3  

consensusID : consensus_6684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 734
fasta sequence
                              [ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCGGACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGGGCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGG-CGTGTGTTTCACACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCGCAACCAGATACATT]

[+] EMBL AL696276             [ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCGGACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGGGCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGG CGTGTGTTTCACACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCGCAACCAGATACATT]
[+] EMBL BX614422             [                                                                                                                                                          CAGATTTGTTGATGTTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGG CGCGGCTTCTCCGATTGGCCGTGTGTTTCACAC GTCACCAT TATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAA GCAAAACTGTTT GAAAACAATACACGCAAA GCGAATT GCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCC                                                                                                                                                                                                                                                                                         ]


>consensus_6684#0 ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCG GACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGG GCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTG TGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCG CACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGGCGTGTGTTTCACAC AGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGA ATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAAT TGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAA GGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGG CTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTC GAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACAT NCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCG CAACCAGATACATT



consensusID : consensus_6684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 677
fasta sequence
                              [ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC-GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGACCATTGAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTTATCCCTTTTAN]

[+] EMBL AL692278             [ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGCGGGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTNTTTTCCGTTCGGGATGACCATTGAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTTATCCCTTTTAN]
[+] EMBL BX618810             [                                TCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCCATATACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCG                                                                                                                                                                                                                ]
[-] EMBL AGA281721            [                                                                             ATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGGCCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGAGCA TGAATTCAG TTTGA TGAAGTT GGGTTAGGATGGAGTGGTAAGA                                                                                                                                                        ]


>consensus_6684#1 ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCA AATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAAC AATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCA TCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAG TAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAAT GAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGCGGAAATAAA TAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGA CATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGACCATT GAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTA GGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACC ATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCC AAGCTTATCCCTTTTAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6684#0      ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCG 60
consensus_6684#1      ATCCCCCGAGGTTATCCG-ATTGGCCGTGTGTTTCA---CACGTCACCATTATTTGTGTA 56
                      *** * **** *** *   *  **    * *   **   *   ** *  * *  * **  

consensus_6684#0      GACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGG 120
consensus_6684#1      AGCAAATCCAC-CAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTG 115
                        ** *   *    *     ** **   ** * ** **  *   **    ***  **  *

consensus_6684#0      GCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTG 180
consensus_6684#1      AAAAC-AATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAA------CACTG 168
                         ** *   **       **  *     **  * *  * **   *         *  **

consensus_6684#0      TGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCG 240
consensus_6684#1      GGTAG-------------TGATGCATCGCCGAATATATATAAAAAA-ACGGTATGGAAAG 214
                       **               * **    *  * *** * * *****   *   ***  *  *

consensus_6684#0      CACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTT---CTCCGATTGGCGTGTGTTTCA 297
consensus_6684#1      GAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCA 274
                       * **   *     * **   **  *      ****   **  * ****      *  **

consensus_6684#0      CACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATT 357
consensus_6684#1      GATAGTCG----ATAACAGTACAATTCAATGAGGTAGAAGGGAGATA-AATTTTCGGATT 329
                       * ****     ***   **  **   ***     ****    ***  ** ****  ***

consensus_6684#0      CGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAA 417
consensus_6684#1      ATAAAAGAAATTCTGAAGAAGCGGAAATAAATA-ACGGAACGGCGGGTGTGCAATG--AA 386
                        **   **      **       ***  **** *** **  ***  *  **  **  **

consensus_6684#0      AATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGG 477
consensus_6684#1      CAGTAATTCAAAGC-----GGT-GTGATG-ATTGC--GATAGACATTAATAACA--ATGT 435
                       * *    **** *     *** ****** **  *   *** *  * ** ***   *** 

consensus_6684#0      AAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTA 537
consensus_6684#1      ATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGG---GATGACCATTGAATTCAGTTT- 491
                      *    **   **      *   *       * * *      ** * *     * **  * 

consensus_6684#0      TGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACA 597
consensus_6684#1      TGACTGAA---TTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTA 548
                      ** **  *        *   ** *   **       *       *      *    *  *

consensus_6684#0      TTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAA 657
consensus_6684#1      GTNNTCGTCTANGACAG--TCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAAC 606
                       *    *  ** ** **   *   ***   ***  *       * *   ******  ** 

consensus_6684#0      CATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGT-GTGCCA 716
consensus_6684#1      AATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTT 666
                       **  *   * *   *     *****  ***  * *    **** * *** *    **  

consensus_6684#0      ACCGCAACCAGATACATT 734
consensus_6684#1      ATCCCTTTTAN------- 677
                      * * *    *        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)