These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 765 fasta sequence [CCGTGCCAATCGCGATTACGTGTACAACAGGCGCTTTTTTATCGATCGCAGTCGGCGTGTAATAATGATTGTGAATAAAAGCGTGGAGCATCCCAAGTGTCCCGCCAAACCGCACACCCAGCGTGTTCATGAGTACTGGAGCTATATGGTGATCAAACCAACGACTGCCTTTAACAAGCCAGGAGTCTCGTTCGTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACATTACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTTGGGGGGGAAACAATTGCACTCCGGGCAGTGTTAG] [+] EMBL BM580723 [CCGTGCCAATCGCGATTACGTGTACAACAGGCGCTTTTTTATCGATCGCAGTCGGCGTGTAATAATGATTGTGAATAAAAGCGTGGAGCATCCCAAGTGTCCCGCCAAACCGCACACCCAGCGTGTTCATGAGTACTGGAGCTATATGGTGATCAAACCAACGACTGCCTTTAACAAGCCAGGAGTCTCGTTCGTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACATTACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTC ] [+] EMBL BX616584 [ GTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACATTACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTTGGGGGGGAAACAATTGCACTCCGGGCAGTGTTAG] consensusID : consensus_6690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CAGATGCCCGATTTCCTGCGGCAACTACACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTGGTAGAGAAAAAGTTGAAATTTTGGCGCTACATATTATTTAAAATTAAGTAGGTTGTTCCAAAATATTATATATAAGAAACGGTAGGACAAAGTGTGGCAATGTTCCAACAATATGAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGNGAAGAAAACATCCTGGTGGAGCTACTTATANTCTTACATCTATTTCGCTTGATCCGGTCCCTACGTCTCAACGCGCGATTTCACGCGGCCTGCTAATTTGTTGGGGGGGAAACTAAATTGCCCCTCCCGGGCAGGTGTT] [+] EMBL BX626495 [CAGATGCCCGATTTCCTGCGGCAACTACACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTGGTAGAGAAAAAGTTGAAATTTTGGCGCTACATATTATTTAAAATTAAGTAGGTTGTTCCAAAATATTATATATAAGAAACGGTAGGACAAAGTGTGGCAATGTTCCAACAATATGAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGNGAAGAAAACATCCTGGTGGAGCTACTTATANTCTTACATCTATTTCGCTTGATCCGGTCCCTACGTCTCAACGCGCGATTTCACGCGGCCTGCTAATTTGTTGGGGGGGAAACTAAATTGCCCCTCCCGGGCAGGTGTT] consensusID : consensus_6690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [AGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGATTTCCCCACAGTCTCTTGCCAGTAGTTGGAACAGCGAAGAAAACATTTGAACAGAATTATCTTACCAGAAGCTTAAGATTTGTTTCTCCCTTCTTATTCAATGAGGCAGGTGCCCTTTTGTGTAGCTCACTTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTCTGCTAATTTGTTGGGGGGAAACTAATTGCACTCCGGGCAGTGTTGGTACTGAGTAAGGGTTGTATGACGTGTCCTATGCT] [+] EMBL BX629098 [AGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGATTTCCCCACAGTCTCTTGCCAGTAGTTGGAACAGCGAAGAAAACATTTGAACAGAATTATCTTACCAGAAGCTTAAGATTTGTTTCTCCCTTCTTATTCAATGAGGCAGGTGCCCTTTTGTGTAGCTCACTTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTCTGCTAATTTGTTGGGGGGAAACTAATTGCACTCCGGGCAGTGTTGGTACTGAGTAAGGGTTGTATGACGTGTCCTATGCT] consensusID : consensus_6690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CAGGCAGAATCGCACGAGGNNTACGAATATCCGCCAGACACACTGCTCGGATACAGTGTCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTGGGGGGAAACAATTGCACTCCGGGCAGCTGTTAGTACTGAGTAAGGTTCCGTATGACGTGTCCTATGCTACTTCGTCGGATAGTGAGGTAAAGGGGTTTCTTNTGCATTCTAAGGACCAAAACCATGGCTAAACCTATGTAAGCAACAAAGTCGAGTTCATAGACATATTTAATTGCGGATGCTT] [+] EMBL AL697201 [CAGGCAGAATCGCACGAGGNNTACGAATATCCGCCAGACACACTGCTCGGATACAGTGTCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTGGGGGGAAACAATTGCACTCCGGGCAGCTGTTAGTACTGAGTAAGGTTCCGTATGACGTGTCCTATGCTACTTCGTCGGATAGTGAGGTAAAGGGGTTTCTTNTGCATTCTAAGGACCAAAACCATGGCTAAACCTATGTAAGCAACAAAGTCGAGTTCATAGACATATTTAATTGCGGATGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6690#1 ------------------------------------------------------------ consensus_6690#2 ------------------------------------------------------------ consensus_6690#0 CCGTGCCAATCGCGATTACGTGTACAACAGGCGCTTTTTTATCGATCGCAGTCGGCGTGT 60 consensus_6690#3 ------------------------------------------------------------ consensus_6690#1 ----------------------------------------------------CAGATGCC 8 consensus_6690#2 ------------------------------------------------------------ consensus_6690#0 AATAATGATTGTGAATAAAAGCGTGGAGCATCCCAAGTGTCCCGCCAAACCGCACACCCA 120 consensus_6690#3 ------------------------------------------------------------ consensus_6690#1 CGATTTCCTGCGGCAACTACACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGA- 67 consensus_6690#2 --------------------------------------------------------AGA- 3 consensus_6690#0 GCGTGTTCATGAGTACTGGAGCTATATGGTGATCAAACCAACGACTGCCTTTAACAAGCC 180 consensus_6690#3 ------------------------------------------------------------ consensus_6690#1 ATGAGACGCGGAT-TATCGA-GTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATAT-C 124 consensus_6690#2 ATGAGACGCGGAT-TATCGA-GTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATAT-C 60 consensus_6690#0 AGGAGTCTCGTTCGTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACAT 240 consensus_6690#3 ------------------------------------------------------------ consensus_6690#1 CGCCAGACACACTGCTCGGATACAG-TGCGGAGGATTTCACGGAAGC---GCAAAAGCAG 180 consensus_6690#2 CGCCAGACACACTGCTCGGATACAG-TGCGGAGGATTTCACGGAAGC---GCAAAAGCAG 116 consensus_6690#0 TACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGAC 300 consensus_6690#3 ------------------------------------------------------------ consensus_6690#1 GAAGAAGAATCTAGTCTACAACAAG--TGGTAGAGAAAAAGTTGAAATT--TTGGCGCTA 236 consensus_6690#2 GAAGAAGAATCTAGTCTACAACAAGATTTCCCCACAGTCTCTTGCCAGTAGTTGGAACAG 176 consensus_6690#0 GGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAA 360 consensus_6690#3 ------------------------------------------------CAGGCAGAATCG 12 * consensus_6690#1 C----ATATTA-----TTTAAAATT-----AAGTAGGTTGTT-----CCAAAAT-ATTAT 276 consensus_6690#2 CGAAGAAAACA-----TTTGAACAG-----AATTATCTTACCAGAAGCTTAAGA-TTTGT 225 consensus_6690#0 GCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGC-GGAGG 419 consensus_6690#3 CACGAGGNNTA-------CGAATATCCGCCAGACACACTGCTCGGATACAGTGTCGGAGG 65 ** * * * consensus_6690#1 ATATAAGAAACGGTAGGACAAAGTGTGGCAATGTTCCAACAATATGAGTCAATGAAATCC 336 consensus_6690#2 TTCTCCCTTCTTATTCAATGAGGCAGGTGCCCTTTTGTGTAGCTCACTTCAATGAAATCC 285 consensus_6690#0 ATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCC 479 consensus_6690#3 ATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCC 125 * * * * * * * ************ consensus_6690#1 ATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATG 396 consensus_6690#2 ATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATG 345 consensus_6690#0 ATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATG 539 consensus_6690#3 ATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATG 185 ************************* *********************** ********** consensus_6690#1 TAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 456 consensus_6690#2 TAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 405 consensus_6690#0 AAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 599 consensus_6690#3 AAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 245 *********************************************************** consensus_6690#1 GTGAAAGTATAGTGGAAGAATGCCCACCGGNGAAGAAAACATCCTGGTGGAGCTACTTAT 516 consensus_6690#2 GTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTAT 465 consensus_6690#0 GTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTAT 659 consensus_6690#3 GTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTAT 305 ****************************** ***************************** consensus_6690#1 ANTCTTACATCTATTTCGCTTGATCCGGTCCCTACGTCTCAACGCGCGATTTCACGCGGC 576 consensus_6690#2 ATTCTTACATCTATTTCGTTTGATCCGGTCCCTACG-CTCAACGCGCGATTTCACGCGGT 524 consensus_6690#0 ATTCTTACATCTATTTCGTTTGATCCGGTCCCTACG-CTCAACGCGCGATTTCACGCGGT 718 consensus_6690#3 ATTCTTACATCTATTTCGTTTGATCCGGTCCCTACG-CTCAACGCGCGATTTCACGCGGT 364 * **************** ***************** ********************** consensus_6690#1 CTGCTAATTTGTTGGGGGGGAAACTAAATTGCCCCTCCCGGGCAGGTGTT---------- 626 consensus_6690#2 CTGCTAATTTGTTGGGGGG-AAACTAA-TTGCACT--CCGGGCAG-TGTTGGTACTGAGT 579 consensus_6690#0 ATGCTAATTTGTTGGGGGGGAAAC--AATTGCACT--CCGGGCAG-TGTTAG-------- 765 consensus_6690#3 ATGCTAATTTGT--GGGGGGAAAC--AATTGCACT--CCGGGCAGCTGTTAGTACTGAGT 418 *********** ***** **** * **** * ******** **** consensus_6690#1 ------------------------------------------------------------ consensus_6690#2 AAGGGTT-GTATGACGTGTCCTATGCT--------------------------------- 605 consensus_6690#0 ------------------------------------------------------------ consensus_6690#3 AAGGTTCCGTATGACGTGTCCTATGCTACTTCGTCGGATAGTGAGGTAAAGGGGTTTCTT 478 consensus_6690#1 ------------------------------------------------------------ consensus_6690#2 ------------------------------------------------------------ consensus_6690#0 ------------------------------------------------------------ consensus_6690#3 NTGCATTCTAAGGACCAAAACCATGGCTAAACCTATGTAAGCAACAAAGTCGAGTTCATA 538 consensus_6690#1 ----------------------- consensus_6690#2 ----------------------- consensus_6690#0 ----------------------- consensus_6690#3 GACATATTTAATTGCGGATGCTT 561 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||