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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 765 fasta sequence
[CCGTGCCAATCGCGATTACGTGTACAACAGGCGCTTTTTTATCGATCGCAGTCGGCGTGTAATAATGATTGTGAATAAAAGCGTGGAGCATCCCAAGTGTCCCGCCAAACCGCACACCCAGCGTGTTCATGAGTACTGGAGCTATATGGTGATCAAACCAACGACTGCCTTTAACAAGCCAGGAGTCTCGTTCGTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACATTACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTTGGGGGGGAAACAATTGCACTCCGGGCAGTGTTAG]
[+] EMBL BM580723 [CCGTGCCAATCGCGATTACGTGTACAACAGGCGCTTTTTTATCGATCGCAGTCGGCGTGTAATAATGATTGTGAATAAAAGCGTGGAGCATCCCAAGTGTCCCGCCAAACCGCACACCCAGCGTGTTCATGAGTACTGGAGCTATATGGTGATCAAACCAACGACTGCCTTTAACAAGCCAGGAGTCTCGTTCGTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACATTACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTC ]
[+] EMBL BX616584 [ GTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACATTACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTTGGGGGGGAAACAATTGCACTCCGGGCAGTGTTAG]
consensusID : consensus_6690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[CAGATGCCCGATTTCCTGCGGCAACTACACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTGGTAGAGAAAAAGTTGAAATTTTGGCGCTACATATTATTTAAAATTAAGTAGGTTGTTCCAAAATATTATATATAAGAAACGGTAGGACAAAGTGTGGCAATGTTCCAACAATATGAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGNGAAGAAAACATCCTGGTGGAGCTACTTATANTCTTACATCTATTTCGCTTGATCCGGTCCCTACGTCTCAACGCGCGATTTCACGCGGCCTGCTAATTTGTTGGGGGGGAAACTAAATTGCCCCTCCCGGGCAGGTGTT]
[+] EMBL BX626495 [CAGATGCCCGATTTCCTGCGGCAACTACACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTGGTAGAGAAAAAGTTGAAATTTTGGCGCTACATATTATTTAAAATTAAGTAGGTTGTTCCAAAATATTATATATAAGAAACGGTAGGACAAAGTGTGGCAATGTTCCAACAATATGAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGNGAAGAAAACATCCTGGTGGAGCTACTTATANTCTTACATCTATTTCGCTTGATCCGGTCCCTACGTCTCAACGCGCGATTTCACGCGGCCTGCTAATTTGTTGGGGGGGAAACTAAATTGCCCCTCCCGGGCAGGTGTT]
consensusID : consensus_6690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[AGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGATTTCCCCACAGTCTCTTGCCAGTAGTTGGAACAGCGAAGAAAACATTTGAACAGAATTATCTTACCAGAAGCTTAAGATTTGTTTCTCCCTTCTTATTCAATGAGGCAGGTGCCCTTTTGTGTAGCTCACTTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTCTGCTAATTTGTTGGGGGGAAACTAATTGCACTCCGGGCAGTGTTGGTACTGAGTAAGGGTTGTATGACGTGTCCTATGCT]
[+] EMBL BX629098 [AGAATGAGACGCGGATTATCGAGTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGATTTCCCCACAGTCTCTTGCCAGTAGTTGGAACAGCGAAGAAAACATTTGAACAGAATTATCTTACCAGAAGCTTAAGATTTGTTTCTCCCTTCTTATTCAATGAGGCAGGTGCCCTTTTGTGTAGCTCACTTCAATGAAATCCATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATGTAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTCTGCTAATTTGTTGGGGGGAAACTAATTGCACTCCGGGCAGTGTTGGTACTGAGTAAGGGTTGTATGACGTGTCCTATGCT]
consensusID : consensus_6690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CAGGCAGAATCGCACGAGGNNTACGAATATCCGCCAGACACACTGCTCGGATACAGTGTCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTGGGGGGAAACAATTGCACTCCGGGCAGCTGTTAGTACTGAGTAAGGTTCCGTATGACGTGTCCTATGCTACTTCGTCGGATAGTGAGGTAAAGGGGTTTCTTNTGCATTCTAAGGACCAAAACCATGGCTAAACCTATGTAAGCAACAAAGTCGAGTTCATAGACATATTTAATTGCGGATGCTT]
[+] EMBL AL697201 [CAGGCAGAATCGCACGAGGNNTACGAATATCCGCCAGACACACTGCTCGGATACAGTGTCGGAGGATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCCATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATGAAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGTGTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTATATTCTTACATCTATTTCGTTTGATCCGGTCCCTACGCTCAACGCGCGATTTCACGCGGTATGCTAATTTGTGGGGGGAAACAATTGCACTCCGGGCAGCTGTTAGTACTGAGTAAGGTTCCGTATGACGTGTCCTATGCTACTTCGTCGGATAGTGAGGTAAAGGGGTTTCTTNTGCATTCTAAGGACCAAAACCATGGCTAAACCTATGTAAGCAACAAAGTCGAGTTCATAGACATATTTAATTGCGGATGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6690#1 ------------------------------------------------------------
consensus_6690#2 ------------------------------------------------------------
consensus_6690#0 CCGTGCCAATCGCGATTACGTGTACAACAGGCGCTTTTTTATCGATCGCAGTCGGCGTGT 60
consensus_6690#3 ------------------------------------------------------------
consensus_6690#1 ----------------------------------------------------CAGATGCC 8
consensus_6690#2 ------------------------------------------------------------
consensus_6690#0 AATAATGATTGTGAATAAAAGCGTGGAGCATCCCAAGTGTCCCGCCAAACCGCACACCCA 120
consensus_6690#3 ------------------------------------------------------------
consensus_6690#1 CGATTTCCTGCGGCAACTACACCAAGCGACGGTGAACTATGCAAAAGCCAAGAAGCAGA- 67
consensus_6690#2 --------------------------------------------------------AGA- 3
consensus_6690#0 GCGTGTTCATGAGTACTGGAGCTATATGGTGATCAAACCAACGACTGCCTTTAACAAGCC 180
consensus_6690#3 ------------------------------------------------------------
consensus_6690#1 ATGAGACGCGGAT-TATCGA-GTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATAT-C 124
consensus_6690#2 ATGAGACGCGGAT-TATCGA-GTTCTGGGACAAGCATAAGGATCCAGGTTTCGAATAT-C 60
consensus_6690#0 AGGAGTCTCGTTCGTACTGACATACTTCGATAATCCAGGACTTTCAATACCGAAGTACAT 240
consensus_6690#3 ------------------------------------------------------------
consensus_6690#1 CGCCAGACACACTGCTCGGATACAG-TGCGGAGGATTTCACGGAAGC---GCAAAAGCAG 180
consensus_6690#2 CGCCAGACACACTGCTCGGATACAG-TGCGGAGGATTTCACGGAAGC---GCAAAAGCAG 116
consensus_6690#0 TACCACCTGGGTGGCTAAAAAGCAGATGCCCGATTTCCTGCGTCAACTTCACCAAGCGAC 300
consensus_6690#3 ------------------------------------------------------------
consensus_6690#1 GAAGAAGAATCTAGTCTACAACAAG--TGGTAGAGAAAAAGTTGAAATT--TTGGCGCTA 236
consensus_6690#2 GAAGAAGAATCTAGTCTACAACAAGATTTCCCCACAGTCTCTTGCCAGTAGTTGGAACAG 176
consensus_6690#0 GGTGAACTATGCAAAAGCCAAGAAGCAGAATGAGACGCGGATTATCGAGTTCTGGGACAA 360
consensus_6690#3 ------------------------------------------------CAGGCAGAATCG 12
*
consensus_6690#1 C----ATATTA-----TTTAAAATT-----AAGTAGGTTGTT-----CCAAAAT-ATTAT 276
consensus_6690#2 CGAAGAAAACA-----TTTGAACAG-----AATTATCTTACCAGAAGCTTAAGA-TTTGT 225
consensus_6690#0 GCATAAGGATCCGGGTTTCGAATATCCGCCAGACACACTGCTCGGATACAGTGC-GGAGG 419
consensus_6690#3 CACGAGGNNTA-------CGAATATCCGCCAGACACACTGCTCGGATACAGTGTCGGAGG 65
** * * *
consensus_6690#1 ATATAAGAAACGGTAGGACAAAGTGTGGCAATGTTCCAACAATATGAGTCAATGAAATCC 336
consensus_6690#2 TTCTCCCTTCTTATTCAATGAGGCAGGTGCCCTTTTGTGTAGCTCACTTCAATGAAATCC 285
consensus_6690#0 ATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCC 479
consensus_6690#3 ATTTCACGGAAGCGCAAAAGCAGGAAGAAGAATCTAGTCTACAACAAGTCAATGAAATCC 125
* * * * * * * ************
consensus_6690#1 ATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATG 396
consensus_6690#2 ATGTCGAAACAAATTCTACATCTCAGCAACCACTAGCTTCAACAACCTCTAAGTCCAATG 345
consensus_6690#0 ATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATG 539
consensus_6690#3 ATGTCGAAACAAATTCTACATCTCATCAACCACTAGCTTCAACAACCTCAAAGTCCAATG 185
************************* *********************** **********
consensus_6690#1 TAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 456
consensus_6690#2 TAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 405
consensus_6690#0 AAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 599
consensus_6690#3 AAGAGTCGACGCAGCTTAACGGAAAGGCAAGTTCACCCAGTGCGGCGGCGACAGATTCGT 245
***********************************************************
consensus_6690#1 GTGAAAGTATAGTGGAAGAATGCCCACCGGNGAAGAAAACATCCTGGTGGAGCTACTTAT 516
consensus_6690#2 GTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTAT 465
consensus_6690#0 GTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTAT 659
consensus_6690#3 GTGAAAGTATAGTGGAAGAATGCCCACCGGTGAAGAAAACATCCTGGTGGAGCTACTTAT 305
****************************** *****************************
consensus_6690#1 ANTCTTACATCTATTTCGCTTGATCCGGTCCCTACGTCTCAACGCGCGATTTCACGCGGC 576
consensus_6690#2 ATTCTTACATCTATTTCGTTTGATCCGGTCCCTACG-CTCAACGCGCGATTTCACGCGGT 524
consensus_6690#0 ATTCTTACATCTATTTCGTTTGATCCGGTCCCTACG-CTCAACGCGCGATTTCACGCGGT 718
consensus_6690#3 ATTCTTACATCTATTTCGTTTGATCCGGTCCCTACG-CTCAACGCGCGATTTCACGCGGT 364
* **************** ***************** **********************
consensus_6690#1 CTGCTAATTTGTTGGGGGGGAAACTAAATTGCCCCTCCCGGGCAGGTGTT---------- 626
consensus_6690#2 CTGCTAATTTGTTGGGGGG-AAACTAA-TTGCACT--CCGGGCAG-TGTTGGTACTGAGT 579
consensus_6690#0 ATGCTAATTTGTTGGGGGGGAAAC--AATTGCACT--CCGGGCAG-TGTTAG-------- 765
consensus_6690#3 ATGCTAATTTGT--GGGGGGAAAC--AATTGCACT--CCGGGCAGCTGTTAGTACTGAGT 418
*********** ***** **** * **** * ******** ****
consensus_6690#1 ------------------------------------------------------------
consensus_6690#2 AAGGGTT-GTATGACGTGTCCTATGCT--------------------------------- 605
consensus_6690#0 ------------------------------------------------------------
consensus_6690#3 AAGGTTCCGTATGACGTGTCCTATGCTACTTCGTCGGATAGTGAGGTAAAGGGGTTTCTT 478
consensus_6690#1 ------------------------------------------------------------
consensus_6690#2 ------------------------------------------------------------
consensus_6690#0 ------------------------------------------------------------
consensus_6690#3 NTGCATTCTAAGGACCAAAACCATGGCTAAACCTATGTAAGCAACAAAGTCGAGTTCATA 538
consensus_6690#1 -----------------------
consensus_6690#2 -----------------------
consensus_6690#0 -----------------------
consensus_6690#3 GACATATTTAATTGCGGATGCTT 561
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||