These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1344 fasta sequence [CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGCATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCGCACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACAGTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCGTGGCCGCCGCCCACGCGTCCGCGG] [-] EMBL BM620369 [CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGCATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCGCACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACAGTTATGTTGGGTGCGAAAGAGAAAGGATAAAATAAATCGATTAT ] [+] EMBL CNS08IM9 [ TTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGTGTGTTAAACAGTTATGTTGGGGGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGATCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTTCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAAAAGCTGTTCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTG ] [-] EMBL BX620073 [ AAGTACCAATAGTTTTTCTCTCTCCTCTAATCGATGTCTTTTTNGCGTGTGATACAGTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATGATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTACTACAAAGGAAACAGTTAGAGGAAAGGAATAGACACAAACAAAAAATCAAACAAACAGACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGAGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACGAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAGGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGA ] [-] EMBL CNS08IM8 [ TGTGGGAATGAGGGACCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATT ] [-] EMBL BM605977 [ GGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACTTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCGTGGCCGCCGCCCACGCGTCCGCGG] consensusID : consensus_6713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAGCAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCCAACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGACCGACTGGTACGTACC] [-] EMBL BX614641 [AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAGCAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCCAACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGACCGACTGGTACGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6713#0 CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGC 60 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 ATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCG 120 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 CACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCA 180 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 CATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAA 240 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 GGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACA 300 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 GTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACAT 360 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 AATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTAC 420 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 TACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACC 480 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 AGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTG 540 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 GTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATC 600 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 TGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGC 660 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 TCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTG 720 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 TGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGG- 779 consensus_6713#1 -------------AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGT 47 *** * * * * ** ** * ** **** ** ** consensus_6713#0 AATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCA 839 consensus_6713#1 AGTTGGGTGTATGCAGATCATC------GCCGGTTTGT-GACATTGT---GCTTAGATTG 97 * * * ******* * * **** *** ** ** ** *** consensus_6713#0 ACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCA 899 consensus_6713#1 GATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGC--AGCGCCCCCGTGAAAGCTGG 155 * ** * * * *** *** * ** *** * *** ** consensus_6713#0 CGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTC-GTGTACGAGCGAGATGC 958 consensus_6713#1 CGCC----CGCTGCACCGA-------GCCCACTGAGCAGTCCCGTGTTGACACTGCA-GC 203 **** ** ** *** ** * * ** * * **** * * ** consensus_6713#0 TGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCA 1018 consensus_6713#1 TGTTCGGAT-GCGCACTGCCAC--CGGTCCAGAAGTCTCCAACGCCGGATGC-ACCGCCG 259 *** * * * ** *** * * * * * *** * ** * * **** consensus_6713#0 GCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATG 1078 consensus_6713#1 AAACCACCGCCGCCACCGAGCGCG-GACG---ACGACGAGTGCGACCGAC-TGGTACGTA 314 * * ******** * *** * * *** *** ** * * * * * * consensus_6713#0 GCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACA 1138 consensus_6713#1 CC---------------------------------------------------------- 316 * consensus_6713#0 GCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCC 1198 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 AGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGG 1258 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 ATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGC 1318 consensus_6713#1 ------------------------------------------------------------ consensus_6713#0 CGTGGCCGCCGCCCACGCGTCCGCGG 1344 consensus_6713#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||