These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 860 fasta sequence [CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTGTCGTTCAAGCA---CACCACCACCACCACCCACATCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT-CGTGC-AAACCGATTTCGAGCT-AATGTACAACGCCATC-AAGACGGCCCACACGGACCTGCTG-CATGCGGGTGAGCTGGCCCAACCAGTTTTGTCAGGCAACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGATTTGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGATCGCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTAACAAAACCAAG] [+] EMBL BM637756 [CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTGTCGTTCAAGCA CACCACCACCACCACCCACATCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT CGTGC AAACCGATTTCGAGCT AATGTACAACGCCATC AAGACGGCCCACACGGACCTGCTG CATGCGGGcg ] [+] EMBL BX603776 [ CACGTATGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTATCGTTCAAGCA CACCACCACCACCACCCACTTCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTACCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT CGTGC AAACCGATTTCGAGCT AATGTACAACGCCATC AAGACGGCCCACACGGACCTGCTG CATGCGGGTGAGCTGGCCCAAC ] [+] EMBL BM582477 [ ccgGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACACTCAAGCTCACTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTGTCGTTCAAGCACACCACCACCACCACCACCCACATCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGAAGCCGCAAGTACGGTGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT CGTGC AAACCGATTTCGAGCT AATGTAC ] [+] EMBL AL695391 [ ccccgaGGTTATCGAGCGGAG GCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTACCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTG CCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGATAAGTGCAAAACCGA TTCGAGCTAAATGTACAACGCCATCAAAGACGGGCCACACGGACCTGCTGTCATGCGGGTGAGCTGGGCCAAACAGTTTTGTCAGGCAACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGATTTGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGATCGCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTAACAAAACCAAG] consensusID : consensus_6720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GAATCCCCCCGAGGTTTNCGGGTAAAGACAAAAGAGGAACGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACANAACCAAGGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGCAGCTGCCAGCGCCGGATGGAGCTGAAGCCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAAGCGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACAATGTGGCGCTGTGCATGACGANCTGGGGCGACTATTCGGTGTATGGGCNGTGTTGGAAGGACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGCCNGCGCGAAAACCTATGATCCTGTAT] [+] EMBL AL694582 [GAATCCCCCCGAGGTTTNCGGGTAAAGACAAAAGAGGAACGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACANAACCAAGGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGCAGCTGCCAGCGCCGGATGGAGCTGAAGCCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAAGCGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACAATGTGGCGCTGTGCATGACGANCTGGGGCGACTATTCGGTGTATGGGCNGTGTTGGAAGGACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGCCNGCGCGAAAACCTATGATCCTGTAT] consensusID : consensus_6720#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTGAATTGATGGTTTCTGTTTCTCACCCTTCTTCCCAGGAATTGACGATCGCGCGGTAAAGACAAAAGAGGAAGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACAAAACCAAGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGAGCTGCCAGCGCCGGATGGAGCTGAACCGGACAC] [+] EMBL AL693648 [CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTGAATTGATGGTTTCTGTTTCTCACCCTTCTTCCCAGGAATTGACGATCGCGCGGTAAAGACAAAAGAGGAAGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACAAAACCAAGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGAGCTGCCAGCGCCGGATGGAGCTGAACCGGACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6720#1 ------------------------------------------------------------ consensus_6720#2 --------------------CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTG 40 consensus_6720#0 CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTG 60 consensus_6720#1 ------------------------GAATCC---CCCCGAGGTTTNCG-------GGTAAA 26 consensus_6720#2 AATTGATGGTTTCTGTTTCTCACCCTTCTT---CCCAGGAATTGACGATCGCGCGGTAAA 97 consensus_6720#0 AGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACC 120 ** * * * consensus_6720#1 GACAAAAGAGGAACGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACA 86 consensus_6720#2 GACAAAAGAGGAA-GTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACA 156 consensus_6720#0 GCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTC 180 * * ** * * *** * ** * *** * * ***** * consensus_6720#1 NAACCAAGG-ACGAGCTGAC--GAAGTGCGCGATGTACCGGGGCAGCC----CGATGGCT 139 consensus_6720#2 AAACCAAG--ACGAGCTGAC--GAAGTGCGCGATGTACCGGGGCAGCC----CGATGGCT 208 consensus_6720#0 CGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCA 240 **** ** ** * * * **** * ** * **** ** * * consensus_6720#1 CGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCT-----GGTGGGATTCG 194 consensus_6720#2 CGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCT-----GGTGGGATTCG 263 consensus_6720#0 GGTAGTTTTGTCGTTCAAGCACACCACCACCACCACCCACATCCCCAGGAGGAGGAAATG 300 ** * *** * * * * * ** ** * * * *** * consensus_6720#1 ATTACTTTAGCTGCATGTTTGACCGCA---GCTGCCAGCGCCGGAT------GGAGCTGA 245 consensus_6720#2 ATTACTTTAGCTGCATGTTTGACCG-A---GCTGCCAGCGCCGGAT------GGAGCTGA 313 consensus_6720#0 TTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTAC 360 *** * ** * * * * ** ******* *** * *** consensus_6720#1 AG----CCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAAG 301 consensus_6720#2 A-----CCGGACAC---------------------------------------------- 322 consensus_6720#0 AAGGTGACGGATGTCGAGCGGAGCCGCAA-GTACGGCGTGGCCGCCGACTCACTTCGCAT 419 * **** consensus_6720#1 CGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACAA 361 consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 GCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCA 479 consensus_6720#1 TGTGGCGCTGTGCATGACGANCTGGGGCGACTATT---CGGTGTATGGGCNGTGTTGGAA 418 consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 GGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTT 539 consensus_6720#1 GGACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGC 478 consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 CGTGGTGGCTGGCAAGGATACGATCGTGCAAACCGATTTCGAGCTAATGTACAACGCCAT 599 consensus_6720#1 CNGCGCGAAAACCTATGATCCTGTAT---------------------------------- 504 consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 CAAGACGGCCCACACGGACCTGCTGCATGCGGGTGAGCTGGCCCAACCAGTTTTGTCAGG 659 consensus_6720#1 ------------------------------------------------------------ consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 CAACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGAT 719 consensus_6720#1 ------------------------------------------------------------ consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 TTGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGAT 779 consensus_6720#1 ------------------------------------------------------------ consensus_6720#2 ------------------------------------------------------------ consensus_6720#0 CGCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTG 839 consensus_6720#1 --------------------- consensus_6720#2 --------------------- consensus_6720#0 GCTATTTTTAACAAAACCAAG 860 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||