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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1269 fasta sequence
[AACGGCGATCGGTCAGAACTTTATTGGAAGTTTAAATGTATCTTCAGACCTTTCCCGATCTAGGCTCTGTTGATAGAGGGGATTATTCTGTACCTATCACGCTTTGAATGCTGCTCTTAAATCAGTAAAAGACCTGGATCTGGCGACGAACCTATTCCGGGTTCCTGATCCAGCTCCAGATTCTGGAATTGATGTCCGAGTCTATGGTGGTTTTTAAACTGATCTCATACGTTACCATTACCACAGCATTACCTTAGATCTGAACTACAGTCCTGCATTGGTCCTGGAATTGGAACTCCCAGACGAAGAACTGGATCCTGATCCCAAACCCGGTAGAACTAGTCCCAGAATTCTTCTGGGTCCTGGATTGGGGTCTTGGATGCAGCCCATCATTTGGTTCACTGTCCTAGAAAGTAACAATCGAGCAAGAGCGTACATATACAAGGTGTAGCAGTTCGGGACGCATAAGCTCCCCAGCCGTTCGGTAGACTTTGTTGAAGTAATTCCAATGGCTCCACTGGTTTCGTAAAGACATAGTTTGCAACACATCTGGGTTTCGGTAAAAGCGGCCAAACAAACGATACGAGCCACCACCCGTCCGGGTTCGGCGGGGGTTGTTTTCTTGTCCTTAACACTAGCTTTTACTTGGGTACTTAGAATTCTGCGCAATATTAATGTATATATGTATATATATATCCTCTGTACGTGGTGGCGGTGGTGTGTACGGGGTTTTGTTTGGATAATTTTCAAATTTTGTTCTTCCTTATAACCAATACGATCGTGCCTGCGCCTGCGCCAAACGAACTACACCCACTACAATATGGCCAGCCAGTTTCATGAAGG--AAAAAAAACGCCTATATCCGTACCTAAAAGTTAGTTTCGTTTGTGCCTTTCTTTTTCTGTTGCTGTTAGACTATGGTGTTGCCGAATTTTAAACTCCGCTCGCCTGAATAATTACTAGTCACGTCCACGCGCACACACACACACAACAACAACAAAAATATTAAAAAAAAAAAACCCCACTAGCGACTAGAAATTTAAAATGTAAGTTATTCGGTAAATAGATTTGCCGCAATGCTCACAAACCCTTGCTGCGTGACGGTTATGGCCCTGCCAAGAAGTAGATTATCTACTCTATTACTCTCTTTCGCTTCTTCCTCTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCACACACACACGCCTTCTCATTTATTGTTC]
[+] EMBL BX628077 [AACGGCGATCGGTCAGAACTTTATTGGAAGTTTAAATGTATCTTCAGACCTTTCCCGATCTAGGCTCTGTTGATAGAGGGGATTATTCTGTACCTATCACGCTTTGAATGCTGCTCTTAAATCAGTAAAAGACCTGGATCTGGCGACGAACCTATTCCGGGTTCCTGATCCAGCTCCAGATTCTGGAATTGATGTCCGAGTCTATGGTGGTTTTTAAACTGATCTCATACGTTACCATTACCACAGCATTACCTTAGATCTGAACTACAGTCCTGCATTGGTCCTGGAATTGGAACTCCCAGACGAAGAACTGGATCCTGATCCCAAACCCGGTAGAACTAGTCCCAGAATTCTTCTGGGTCCTGGATTGGGGTCTTGGATGCAGCCCATCATTTGGTTCACTGTCCTAGAAAGTAACAATCGAGCAAGAGCGTACATATACAAGGTGTAGCAGTTCGGGACGCATAAGCTCCCCAGCCGTTCGGTAGACTTTGTTGAAGTAATTCCAATGGCTCCACTGGTTTCGTAAAGACATAGTTTGCAACACATCTGGGTTTCGGTAAAAGCGGCCAAACAAACGATACGAGCCACCACCCGTCCGGGTTCGGCGGGGGTTGTTTTCTTGTCCTTAACACTAGCTTTTACTTGGGTACTTAGAATTCTGCGCAATATTAATGNATATATGNATATATATATCCTCTGT ]
[-] EMBL BM631321 [ ATCATTTGGTTCACTGTCCTAGAAAGTAGCAATCGAGCAAGAGCGTACATATTC AGGTGTAGCAGTTCGGGACGCATAAGCTCCCCAGCCGTTCGGTAGACTTTGTTGAAGTAATTCCAATGGCTCCACTAATTTCGTAAAGACATAGTTTGCAACACATCTGGGTTTCGGTAAAAGCGGCCAAACAAACGATACGAGCCACCACCCGTCCGGGATCGGCGGGGGTTGTTTTCTTGTCCTTAACACTAGCTTTTACTTGGGTACTTAGAATTCTGCGCAATATTAATGTATATATGTATATATATATCCTCTGTACGTGGTGGCGGTGGTGTGTACGGGGTTTTGTTTGGATAATTTTCAAATTTTGTTCTTCCTTATAACCAATACGATCGTGCCTGCGCCTGCGCCAAACGAGCTACACCCACAACAATATGGCCAGCCAGTTTCATGAAGGAAAAAAAAAACGCCTATATCCGTACCTAAAAGTTAGTTTCGTTTGTGCCTTTCTTTTTCTGTTGCTGTTAGACTATGGcgg ]
[-] EMBL BX628066 [ TAATTCCAATGGCTCCACTGGTTTCGTAAAGACATAGTTTGCAACACATCTGGGTTTCGGTAAAAGCGGCCAAACAAACGATACGAGCCACCACCCGTCCGGGTTCGGCGGGGGTTGTTTTCTTGTCCTTAACACTAGCTTTTACTTGGGTACTTAGAATTCTGCGCAATATTAATGTATATATGTATATATATATCCTCTGTACGTGGTGGCGGTGGTGTGTACGGGGTTTTGTTTGGATAATTTTCAAATTTTGTTCTTCCTTATAACCAATACGATCGTGCCTGCGCCTGCGCCAAACGAACTACACCCACTACAATATGGCCAGCCAGTTTCATGAAGG AAAAAAAACGCCTATATCCGTACCTAAAAGTTAGTTTCGTTTGTGCCTTTCTTTTTCTGTTGCTGTTAGACTATGGTGTTGCCGAATTTTAAACTCCGCTCGCCTGAATAATTACTAGTCACGTCCACGCGCACACACACACACAACAACAACAAAAATATTAAAAAAAAAAAACCCCACTAGCGACTAGAAATTTAAAATGTAAGTTATTCGGTAAATAGATTTGCCGCAATGCTCACAAACCCTTGCTGCGTGACGGTTATGGCCCTGCCA ]
[-] EMBL BM631450 [ TGTATATATGTATATATATATCCTCTGTACGTGGTGGCGGTGGTGTGTACGGGGTTTTGTTTGGATAATTTTCAAATTTTGTTCTTCCTTATAACCAATACGATCGTGCCTGCGCCTGCGCCAAACGAACTACACCCACTACAATATGGCCAGCCAGTTTCATGAAGG AAAAAAAACGCCTATATCCGTACCTAAAAGTTAGTTTCGTTTGTGCCTTTCTTTTTCTGTTGCTGTTAGACTATGGTGTTGCCGAATTTTAAACTCCGCTCGCCTGAATAATTACTAGTCACGTCCACGCGCACACACACACACAACAACAACAAAAATATTAAAAAAAAAAAACCCCACTAGCGACTAGAAATTTAAAATGTAAGTTATTCGGTAAATAGATTTGCCGCAATGCTCACAAACCCTTGCTGCGTGACGGTTATGGCCCTGCCAAGAAGTAGATTATCTACTCTATTACTCTCTTTCGCTTCTTCCTCTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCACACACACACGCCTTCTCATTTATTGTTC]
[-] EMBL BX615093 [ ACGTGGTGGCGGTGGTGTGTACGGGGTTTTGTTTGGATAATTTTCAAATTTTGTTCTTCCTTATAACCAATACGATCGTGCCTGCGCCTGCGCCAAACGAACTACACCCACTACAATATGGCCAGCCAGTTTCATGAAGG AAAAAAAACGCCTATATCCGTACCTAAAAGTTAGTTTCGTTTGTGCCTTTCTTTTTCTGTTGCTGTTAGACTATGGTGTTGCCGAATTTTAAACTCCGCTCGCCTGAATAATTACTAGTCACGTCCACGCGCACACACACACACAACAACAACAAAAATATTAAAAAAAAAAAACCCCACTAGCGACTAGAAATTTAAAATGTAAGTTATTCGGTAAATAGATTTGCCGCAATGCTCACAAACCCTTGCTGCGTGACGGTTATGGACCTGCCAAGAAGTAGATTATCTACTCTATTACTCTCTTTCGCTTCTTCCTCTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC ]
consensusID : consensus_6721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence
[GAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGACAAACGAAACTAACTTTTAGGGACGGATATAGGCGTTTTTTTTCTTTCATGAAACTGGCTGGCGATATTGTAGTGGGTGTAGTTC]
[+] EMBL BX614780 [GAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGACAAACGAAACTAACTTTTAGGGACGGATATAGGCGTTTTTTTTCTTTCATGAAACTGGCTGGCGATATTGTAGTGGGTGTAGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6721#0 AACGGCGATCGGTCAGAACTTTATTGGAAGTTTAAATGTATCTTCAGACCTTTCCCGATC 60
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TAGGCTCTGTTGATAGAGGGGATTATTCTGTACCTATCACGCTTTGAATGCTGCTCTTAA 120
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 ATCAGTAAAAGACCTGGATCTGGCGACGAACCTATTCCGGGTTCCTGATCCAGCTCCAGA 180
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TTCTGGAATTGATGTCCGAGTCTATGGTGGTTTTTAAACTGATCTCATACGTTACCATTA 240
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 CCACAGCATTACCTTAGATCTGAACTACAGTCCTGCATTGGTCCTGGAATTGGAACTCCC 300
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 AGACGAAGAACTGGATCCTGATCCCAAACCCGGTAGAACTAGTCCCAGAATTCTTCTGGG 360
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TCCTGGATTGGGGTCTTGGATGCAGCCCATCATTTGGTTCACTGTCCTAGAAAGTAACAA 420
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TCGAGCAAGAGCGTACATATACAAGGTGTAGCAGTTCGGGACGCATAAGCTCCCCAGCCG 480
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TTCGGTAGACTTTGTTGAAGTAATTCCAATGGCTCCACTGGTTTCGTAAAGACATAGTTT 540
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 GCAACACATCTGGGTTTCGGTAAAAGCGGCCAAACAAACGATACGAGCCACCACCCGTCC 600
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 GGGTTCGGCGGGGGTTGTTTTCTTGTCCTTAACACTAGCTTTTACTTGGGTACTTAGAAT 660
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TCTGCGCAATATTAATGTATATATGTATATATATATCCTCTGTACGTGGTGGCGGTGGTG 720
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TGTACGGGGTTTTGTTTGGATAATTTTCAAATTTTGTTCTTCCTTATAACCAATACGATC 780
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 GTGCCTGCGCCTGCGCCAAACGAACTACACCCACTACAATATGGCCAGCCAGTTTCATGA 840
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 AGGAAAAAAAACGCCTATATCCGTACCTAAAAGTTAGTTTCGTTTGTGCCTTTCTTTTTC 900
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TGTTGCTGTTAGACTATGGTGTTGCCGAATTTTAAACTCCGCTCGCCTGAATAATTACTA 960
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 GTCACGTCCACGCGCACACACACACACAACAACAACAAAAATATTAAAAAAAAAAAACCC 1020
consensus_6721#1 ---------------------GAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG 39
* ** ** ** ** ** * ** ** ** **
consensus_6721#0 CACTAGCGACTAGAAATTTAAAATGTAAGTTATTCGGTAAATAGATTTGCCGCAATGCTC 1080
consensus_6721#1 AAGAAG-AAGAAGAAGAAGAAGAAGAAAGGGACAAACGAAACTAACTTTTAGGGACGGAT 98
* ** * **** ** * * *** * *** * ** * * *
consensus_6721#0 ACAAACCCTTGCTGCGTGACGGTTATGGCCCTGCCAAGAAGTAGATTATCTACTCTATTA 1140
consensus_6721#1 ATAGGCGTTTTTTTT----CTTTCATGAAACTGGCTGGCGATATTGTAGTGGGTGTAGTT 154
* * * ** * * * *** *** * * ** ** * ** *
consensus_6721#0 CTCTCTTTCGCTTCTTCCTCTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT 1200
consensus_6721#1 C----------------------------------------------------------- 155
*
consensus_6721#0 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCACACACACACGCCTTCTCAT 1260
consensus_6721#1 ------------------------------------------------------------
consensus_6721#0 TTATTGTTC 1269
consensus_6721#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||