These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1023 fasta sequence [CTAATCACACCAGAATAAGAAAGATAGTCAGTGTGTACGCGAACGAAATAGTGTGTGTGAGTGTGTGTGTGTGTGAGAAAGAGAGGTGCTTCGAGGGAAAAGGCACATCGTTCGTAAGTTTGTATCAAATAGATAGTGCAAACAAATCGCGATCATGCACAAAGGTGCTACAACGGATGAACCACATGGAACGTCACGGCAAGGGCACGGTCGGCAGTCCAAGGCAGGCGTCCCAATCGAGAAAGAGAACATCCCCTTTGTCGATTCGGATCACGAAGACGACTGCTTTGACGACGCCGGCGATCGTTTGGCAGCCGCGATCAGTAGTAGATCGACAGTTGACCAAGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAGAAGAATGCAGGAAAAGCTAACAGTTTCCATCGACACCAGCAGTAATGATGGGGATTTGATCGAAGAGGCCAGGGACAAAGCTACGGAGCTGAAACTGATCGACGAACGAGCTAGAGGTTTGCGTCGAAACTCCATTTCCTTACCAAGCCTGAATGTGAATGAGCTGGAAGTACTGAGATCAGCGCATGAATGTGAAAATGGTTCAAAAATATCGGTCATGGAATCTGGATCAGATTCTCTGTCGGACGGAACTACGGTTACCCCAGAAACTCCTACTACACCAGCAAACCTCAAACCAATGCTACAGTTTAATGATGATAGCAGTAGCGACGAGGACGATAAACCCCGTAGCAAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGT] [+] EMBL BM630573 [CTAATCACACCAGAATAAGAAAGATAGTCAGTGTGTACGCGAACGAAATAGTGTGTGTGAGTGTGTGTGTGTGTGAGAAAGAGAGGTGCTTCGAGGGAAAAGGCACATCGTTCGTAAGTTTGTATCAAATAGATAGTGCAAACAAATCGCGATCATGCACAAAGGTGCTACAACGGATGAACCACATGGAACGTCACGGCAAGGGCACGGTCGGCAGTCCAAGGCAGGCGTCCCAATCGAGAAAGAGAACATCCCCTTTGTCGATTCGGATCACGAAGACGACTGCTTTGACGACGCCGGCGATCGTTTGGCAGCCGCGATCAGTAGTAGATCGACAGTTGACCAAGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAGAAGAATGCAGGAA ] [+] EMBL BM645504 [ ccgGTTGACCAAGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTATTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAGAAGAATGCAGGAAAAGCTAACAGTTTCCATCGACACCAGCAGTAATGATGGGGATTTGATCGAAGAGGCCAGGGACAAAGCTACGGAGCTGAAACTGATCGACGAACGAGCTAGAGGTTTGCGTCGAAACTCCATTTCCTTACCAAGCCTGAATGTGAATGAGCTGGAAGTACTGAGATCAGCGCATGAATGTGAAAATGGTTCAAAAATATCGGTCATGGAATCTGGATCAGATTCTCTGTCGGACGGAACTACGGTTACCCCAGAAACTCCTACTACACCAGCAAACCTCAAACCAATGCTACAGTTTAATGATGATAGCAGTAGCGACGAGGACGATAAACCCCGTAGCAAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGT] [+] EMBL BM651867 [ ccgGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAG ] consensusID : consensus_6722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence [CCGGCAGAGGGTAGTTTGAACTGAGCGATCGAATGATAAGGTGTATTCGTTGTGAGCATTTGCGTAGGATTAGAAGTTTTAGTTTGAGCACATGTGACCGTATTTGCAGCTGCCAGTGTTTGCCAAATAATTGCTGATTATGGTCAACCAGTGTTCTGTGCAGCGCGAGTGTGAAATGGAAGAGTTTGTGGTGGAGCCTAAATATGCCACCTTCAGTCACTTCGGCCAAACAGGAAATCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGAGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTACCCCGACGGACTGTTTCGATGTTTCCGAGGAGCGTGGCTTCTGGTATGGCGGAGGAT] [+] EMBL BM617223 [CCGGCAGAGGGTAGTTTGAACTGAGCGATCGAATGATAAGGTGTATTCGTTGTGAGCATTTGCGTAGGATTAGAAGTTTTAGTTTGAGCACATGTGACCGTATTTGCAGCTGCCAGTGTTTGCCAAATAATTGCTGATTATGGTCAACCAGTGTTCTGTGCAGCGCGAGTGTGAAATGGAAGAGTTTGTGGTGGAGCCTAAATATGCCACCTTCAGTCACTTCGGCCAAACAGGAAATCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGAGGTGTTGGGAACATCGCTG ] [+] EMBL BM593190 [ ccgCAGTCACTTCGGTCAAACAGGAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGGGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTACCCCGACGGACTGTTTCGATGTTTCCGAGGAGCGTGGCTTCTGGTATGGCGGAGGAT] consensusID : consensus_6722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGCGGACGCGTGGGCTGGTCGGTTCAGGGCTGTTACGCGCGGTGTCAGATCGTTTAAGTGTATAATGTCTACATTGCATTTTACTTCCTAACAACATAAAGCTGCTATAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGGGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTA] [+] EMBL BM577371 [CCGCGGACGCGTGGGCTGGTCGGTTCAGGGCTGTTACGCGCGGTGTCAGATCGTTTAAGTGTATAATGTCTACATTGCATTTTACTTCCTAACAACATAAAGCTGCTATAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGGGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6722#1 ---------CCGGCAGAGGGTAGTTTGA-ACTGAGCGATCGAATGATAAGGTGTATTCGT 50 consensus_6722#2 ------------------------------------------------------------ consensus_6722#0 CTAATCACACCAGAATAAGAAAGATAGTCAGTGTGTACGCGAACGAAATAGTGTGTGTGA 60 consensus_6722#1 TGTGAGCATTTGCGTAGGATTAGAAGTTTTAGTTTGAGCACATGTGACCGTATTTGCAGC 110 consensus_6722#2 ------------------------------------------------------------ consensus_6722#0 -GTGTGTGTGTGTGTGAGAAAGAGAGGTGCTTCGAGGGAAAAGGCACATCGTTCGTAAGT 119 consensus_6722#1 TGCCAGTGTTTGCCAAATAATTGCTGATTATGGTCAACCAGTGTTCTG-TGCAGCGCGAG 169 consensus_6722#2 ------------CCGCGGACGCGTGGGCT--GGTCGGTTCAGGG-CTG-TTACGCGCG-G 43 consensus_6722#0 TTGTATCAAATAGATAGTGCAAACAAATCGCGATCATGCACAAAGGTGCTACAACGGATG 179 * ** ** * ** * consensus_6722#1 TGTGAAATGGAA-GAGTTTGTGGTGGAGCCTAAATATGCCACCTTC-AGTCACTTCGGCC 227 consensus_6722#2 TGTCAGATCGTTTAAGTGTATAATGTCTACATTGCATTTTACTTCCTAACAACATAAAGC 103 consensus_6722#0 AACCACATGGAACGTCACGGCAAGGGCACGGTCGGCAGTCCAAGGCAGGCGTCCCAATCG 239 * ** * * * * consensus_6722#1 AAACAGGAAATCTCTTC----------CGGACTA-AACGACGCT--CCTCGATTGCACCA 274 consensus_6722#2 TGCTATAAAACCTCTTC----------CGGACTA-AACGACGCT--CCTCGATTGCACCA 150 consensus_6722#0 AGAAAGAGAACATCCCCTTTGTCGATTCGGATCACGAAGACGACTGCTTTGACGACGCCG 299 * ** ** * **** * * **** * * ** * ** consensus_6722#1 CTGCCCGCCT------TGAGAT---TAAACGACAAGGAGATGATGTCGA--ACGACTTCG 323 consensus_6722#2 CTGCCCGCCT------TGAGAT---TAAACGACAAGGAGATGATGTCGA--ACGACTTCG 199 consensus_6722#0 GCGATCGTTTGGCAGCCGCGATCAGTAGTAGATCGACAGTTGACCAAGAGTACGACATTA 359 * ** * * *** ** ** ** *** ** ***** * consensus_6722#1 ATACGCACAGCGTGCTAAG---CAATCAGGCTTCGATCACCAGCGTAAACTCA-TTGG-- 377 consensus_6722#2 ATACGCACAGCGTGCTAAG---CAATCAGGCTTCGATCACCAGCGTAAACTCA-TTGG-- 253 consensus_6722#0 TGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTC 419 *** * *** * * * ** ** * ** ** ** *** ** *** consensus_6722#1 CCAGC-TTGCTGAAGGAAAAAATGCAGAACG---TACCTGCTATCATTCGCA--AGAAAA 431 consensus_6722#2 CCAGC-TTGCTGAAGGAAAAAATGCAGAACG---TACCTGCTATCATTCGCA--AGAAAA 307 consensus_6722#0 CCAGCCTTGCCGAAAGAAGAA-TGCAGGAAAAGCTAACAGTTTCCATCGACACCAGCAGT 478 ***** **** *** *** ** ***** * ** * * * *** ** ** * consensus_6722#1 AGCGC--GAAACTAAAGACTACAAGCTTCG--CGTGTTTGTCGGGATGTTATTCCTTATC 487 consensus_6722#2 AGCGC--GAAACTAAAGACTACAAGCTTCG--CGTGTTTGTCGGGATGTTATTCCTTATC 363 consensus_6722#0 AATGATGGGGATTTGATCGAAGAGGCCAGGGACAAAGCTACGGAGCTGAAACTGATCGAC 538 * * * * * * * * ** * * * * * ** * * * * consensus_6722#1 ATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCG 547 consensus_6722#2 ATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCG 423 consensus_6722#0 GAACGAGCTAGAGGTTTGCGTCGAAACTCCATTTCCTTACCAAGCCTGAATGTGAA---- 594 * * * * * * ** ** * * * * *** * ** consensus_6722#1 TACTTCGAGAGCATTAAGTTT--CACAAGAAAACTAGGAACTTTCGAC--TGCTGG--AT 601 consensus_6722#2 TACTTCGAGAGCATTAAGTTT--CACAAGAAAACTAGGAACTTTCGAC--TGCTGG--AT 477 consensus_6722#0 TGAGCTGGAAGTACTGAGATCAGCGCATGAATGTGAAAATGGTTCAAAAATATCGGTCAT 654 * * ** * * ** * * ** *** * * *** * * ** ** consensus_6722#1 GGGAAAGGGGGCGAGCTGT-TAACGGA-GGTGTTGGGAACATCGCTGAATATCGAGCAGC 659 consensus_6722#2 GGGAAAGGGGGCGAGCTGT-TAACGGG-GGTGTTGGGAACATCGCTGAATATCGAGCAGC 535 consensus_6722#0 GGAATCTGGATCAGATTCTCTGTCGGACGGAACTACGGTTACCCCAGAAACTCCTACTAC 714 ** * ** * * * * *** ** * * * * * *** ** * * consensus_6722#1 CGTAC--AACTGCTTGCCGAAGG---ATCTGAAGGACGATGGCAGTGTTTGTTATGA-GT 713 consensus_6722#2 CGTAC--AACTGCTTGCCGAAGG---ATCTGAAGGACGATGGCAGTGTTTGTTATGA-GT 589 consensus_6722#0 ACCAGCAAACCTCAAACCAATGCTACAGTTTAATGATGATAGCAGTAGCGACGAGGACGA 774 * *** * ** * * * * ** ** *** ***** * ** * consensus_6722#1 GGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGAC-ATCAAA 772 consensus_6722#2 GGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGAC-ATCAAA 648 consensus_6722#0 TAAACCCCGTAGCAAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCC 834 *** * ** * * * *** * * * ** ** * ** * consensus_6722#1 TGCTACTCGTTTCAGTG----GGAGTCTTTGCTAGCTGATCTCTACCCCGACGGACTGTT 828 consensus_6722#2 TGCTACTCGTTTCAGTG----GGAGTCTTTGCTAGCTGATCTCTA--------------- 689 consensus_6722#0 CGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCT 894 ** * ** * * **** ** ** ** * consensus_6722#1 TCGATGTTTC-CGAGGAGCGTGGCTTCTGGTATGGCGGAGGAT----------------- 870 consensus_6722#2 ------------------------------------------------------------ consensus_6722#0 AAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAAT 954 consensus_6722#1 ------------------------------------------------------------ consensus_6722#2 ------------------------------------------------------------ consensus_6722#0 GCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCG 1014 consensus_6722#1 --------- consensus_6722#2 --------- consensus_6722#0 CGTGTTTGT 1023 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||