These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [CATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTCGGTCATCTACGGCTCTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGGTAAGAATGCGAAGACCGGCGGTAACAAGAAGACGGTTCCAATAAAAATCAGTTCCCCGAATTGACTCCCACATCATTCGCGATCAGCGAACCGTCGGAAGTTGGTGACCCTCGTAGGTGCCACGGGACGCACACACAGCACACACCGATTAAGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGCGGCGAACGCCATCAGCCTGCCGGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGGCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAACAGGGACCGTTTCCGCAGCCAGTTTGAAAAAGCGTGCCCAGGGCGCGGCGCTCAAACCCGGCGGCAAGGCGGTGCGCATCAAGCTGAACGTTACGGATGACTCGCTCGCGCTAAACTACGAAACCGACGAAAGTTACTCCTTTACCGTGGGGGCCGGCTCTAGCAAGGACGAGCTGCAGG] [+] EMBL BX626343 [CATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTCGGTCATCTACGGCTCTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGGTAAGAATGCGAAGACCGGCGGTAACAAGAAGACGGTTCCAATAAAAATCAGTTCCCCGAATTGACTCCCACATCATTCGCGATCAGCGAACCGTCGGAAGTTGGTGACCCTCGTAGGTGCCACGGGACGCACACACAGCACACACCGATTAAGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGCGGCGAACGCCATCAGCCTGCCGGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGGCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTG ] [+] EMBL BX623598 [ CGAAAACCGGCCAGCAGATCCGGGTAAGAATGCAAAGACCGGCGGTAACAAGAAGACGGTTCCAATAAAAATCAGTTCCCCGAATTGACTCCCACATCATTCGCGATCAGCGAACCGTCGGAAGTTGGTGACCCTCGTAGGTGCCACGGGACG CACACAGCGCACACCGATTAAGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCGGCGGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAACAGGGACCGTTTCCGCAGCCAGTTTGAAAAAGCGTGCCCAGGGCGCGGCGCTCAAACCCGGCGGCAAGGCGGTGCGCATCAAGCTGAACGTTACGGATGACTCGCTCGCGCTAAACTACGAAACCGACGAAAGTTACTCCTTTACCGTGGGGGCCGGCTCTAGCAAGGACGAGCTGCAGG] consensusID : consensus_6726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 742 fasta sequence [CCGCGGACGCGTGGGTTAGCTCCATCCCAACGTCCCTATCCAAGCGAAGAAAAAAACACAAACACAAATTTCAAGTAGTGTGTAGAACCCTCCAACTCGCAACACAAGTGGGAGATGGTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTTGGTCGTCTACGGCTTTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCGGCGGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAACAGGGGACCGTTTCCGCAGCCAGCCTTAAAAAGCGTGCCCAGGGCGCGGCGCTCAAACCCGGCGGCAAGGCGGTGCGAATCAAGCTGA] [+] EMBL BM621115 [CCGCGGACGCGTGGGTTAGCTCCATCCCAACGTCCCTATCCAAGCGAAGAAAAAAACACAAACACAAATTTCAAGTAGTGTGTAGAACCATCCAACTCGCAACACAAGTGGGAGATGGTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTTGGTCGTCTACGGCTTTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCCTTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGCGGCGAACGCCATCAGCC ] [+] EMBL BM622733 [ ccgAAAAACACAAACATAAATTTCAAGTAGTGTGTAGAACCCTCCAACTCGCAACACAAGTGGGAGATGGTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTCGGTCATCTACGGCTTTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCGGCGGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACC ] [+] EMBL BM583917 [ CCGCCAACTCGCAACACAAGTGGGAGATGGTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTTGGTCGTCTACGGCTTTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGCTGTTCGATTATCTCCAGCAGTCTTCGAAACAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCGGCGGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAACAGGGGACCGTTTCCGCAGCCAGCCTTAAAAAGCGTGCCCAGGGCGCGGCGCTCAAACCCGGCGGCAAGGCGGTGCGAATCAAGCTGA] consensusID : consensus_6726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCACGGACCAGCTGCTGGCGTTGTTTACCCTTTTGGGTTCCCTTTTTTCCTTAGCTCCATCCCAACGTCCCTATCCAAGCGAAGAAAAAAACACAAACACAAATTTCAAGTAGTGTGTAGAACCATCCAACTCGCAACACAAGTGGGAGATGGTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTTGGTCGTCTACGGCTTTACCTGCTCCGACGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCCTTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGCGGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAACAGGGGACCGTTTCCGCAGCCAGCTTAAAAAAGCGTGCCCAGGG] [+] EMBL BM647687 [CCGCGGACGCGTGGGCGGACGCGTGGGCACGGACCAGCTGCTGGCGTTGTTTACCCTTTTGGGTTCCCTTTTTTCCTTAGCTCCATCCCAACGTCCCTATCCAAGCGAAGAAAAAAACACAAACACAAATTTCAAGTAGTGTGTAGAACCATCCAACTCGCAACACAAGTGGGAGATGGTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACCGGTTTTTTGGTCGTCTACGGCTTTACCTGCTCCGACGCTGTTCGATTATCTCCAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCCTTATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGGCTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGCGGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCTCTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGACCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAACAGGGGACCGTTTCCGCAGCCAGCTTAAAAAAGCGTGCCCAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6726#1 ----------------------------------------------------------CC 2 consensus_6726#2 CCGCGGACGCGTGGGCGGACGCGTGGGCACGGACCAGCTGCTGGCGTTGTTTACCCTTTT 60 consensus_6726#0 ----CATTGCCCGAATCAACCCATCAACCC--ATCCAGAACCGGT-TTTTCGGTCATCTA 53 consensus_6726#1 GCGGACGCGTGG---GTTAGCTCCATCCCAACGTCCCTATCCAAGCGAAGAAAAAAACAC 59 consensus_6726#2 GGGTTCCCTTTTTTCCTTAGCTCCATCCCAACGTCCCTATCCAAGCGAAGAAAAAAACAC 120 consensus_6726#0 CGGCTCTACCTGCTCCGACGGTACGTAATCGCGTGCGAAGGAAAGGCAAAGTGGGTGCCT 113 * * * * * * *** * * *** ** * consensus_6726#1 AAACACAAATTTCAAGTAG-TGTGTAGAACCCTCCAACTCGCAACA-CAAGTGGGAGATG 117 consensus_6726#2 AAACACAAATTTCAAGTAG-TGTGTAGAACCATCCAACTCGCAACA-CAAGTGGGAGATG 178 consensus_6726#0 ACCGAAAACCGGCCAGCAGATCCGGGTAAGAATGCGAAGACCGGCGGTAACAAGAAGACG 173 * * ** * ** ** * * ** * * * * * ** * *** * consensus_6726#1 GTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACC 177 consensus_6726#2 GTGCAGAAGATGAAATAATCAGGACATTGCCCGAATCAACCCATCAACCCATCCAGAACC 238 consensus_6726#0 GTTCCAAT-----AAAAATCAG----TTCCCCGAATTGACTC-CCACATCATTCGCGATC 223 ** * * ** ****** ** ******* ** * ** *** * * * consensus_6726#1 GGT---TTTTTGGTCGTCTACGGCTTTACCTGCTCCGACGGTACGTAATCGCGTGCGAAG 234 consensus_6726#2 GGT---TTTTTGGTCGTCTACGGCTTTACCTGCTCCGACG-------------------- 275 consensus_6726#0 AGCGAACCGTCGGAAGTTGGTGACCCTCGTAGGTGCCACGGGACGCACACACAGCACACA 283 * * ** ** * * * * * * *** consensus_6726#1 GAAAGGCAAAGTGGGTGCCTACCGAAAACCGGCCAGCAGATCCGGCTGTTCGATTATCTC 294 consensus_6726#2 ---------------------------------------------CTGTTCGATTATCTC 290 consensus_6726#0 ------------------------------------CCGATTAAGCTGTTCGATTATCTC 307 *************** consensus_6726#1 CAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATT 354 consensus_6726#2 CAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCCTT 350 consensus_6726#0 CAGCAGTCTTCGAAGCAGCGACAGCAGGATGGCTGAAGTACAATATCTTGTGACGGCATT 367 ********************************************************* ** consensus_6726#1 ATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGG 414 consensus_6726#2 ATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGG 410 consensus_6726#0 ATTTGCTCTATTTGTTTGCACTGGAATCGGAGTCCACTCGGAGGGCGAAGCCGTATGGGG 427 ************************************************************ consensus_6726#1 CTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCGGC 474 consensus_6726#2 CTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGC 470 consensus_6726#0 CTACCAGTGCAAGAACGATCGCTGCGTCAAAACGGCCATCTCGGAGGAATCATACCCAGC 487 ********************************************************* ** consensus_6726#1 GGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCT 534 consensus_6726#2 GGCGAACGCCATCAGCCTACCAGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGCCTCCT 530 consensus_6726#0 GGCGAACGCCATCAGCCTGCCGGCATGTCGGCTGTTCTGCGGCGAAGGAGCTGGGCTCCT 547 ****************** ** ******************************** ***** consensus_6726#1 CTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGA 594 consensus_6726#2 CTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGA 590 consensus_6726#0 CTGGCCACAGCCAACCGGGCAGCTGGCGGTGGAGAACGAGCTCGCCCACATCGACCCCGA 607 ************************************************************ consensus_6726#1 CCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAA 654 consensus_6726#2 CCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAA 650 consensus_6726#0 CCAGGTGTGGTTCCAGTGGGACGAAAAGCTGACCCAGCTCGTCGGTCTGTGGGAAGCGAA 667 ************************************************************ consensus_6726#1 CAGGGGACCGTTTCCGCAGCCAGCCTTAAAAAGCGTGCCCAGGGCGCGGCGCTCAAACCC 714 consensus_6726#2 CAGGGGACCGTTTCCGCAGCCAGCTTAAAAAAGCGTGCCCAGGG---------------- 694 consensus_6726#0 CAGGG-ACCGTTTCCGCAGCCAGTTTGAAAAAGCGTGCCCAGGGCGCGGCGCTCAAACCC 726 ***** ***************** * ***************** consensus_6726#1 GGCGGCAAGGCGGTGCGAATCAAGCTGA-------------------------------- 742 consensus_6726#2 ------------------------------------------------------------ consensus_6726#0 GGCGGCAAGGCGGTGCGCATCAAGCTGAACGTTACGGATGACTCGCTCGCGCTAAACTAC 786 consensus_6726#1 ------------------------------------------------------------ consensus_6726#2 ------------------------------------------------------------ consensus_6726#0 GAAACCGACGAAAGTTACTCCTTTACCGTGGGGGCCGGCTCTAGCAAGGACGAGCTGCAG 846 consensus_6726#1 - consensus_6726#2 - consensus_6726#0 G 847 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||