These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1314 fasta sequence [CCGCGCCTGCTGCAGGACCACATCGATGAGATAGGCGCGACGGGTGGTATACCGTTCTACATTCTGAAGCCGGTGCTGGAACGGGCCAATCCGACTCAGCTGCTCCATCTGGAACACTTCAATCCGCACTTTGTCGAGGACAGTGATGTTCTGTGGGAGCAGCACTGTAAACGTACCTTCCGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGCTCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAACAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCACCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCACCCGCGGCACGTGTAGCTGCATTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGGTTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAACCACGCAAAGCTCC-AATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGCTTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGCACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAATGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTACTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAATTACGTTTTACATCGTCACTCAAACGCCTTATTTATGCTATGTCTCTTTAATATCATCTTTTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGTGAGCGTGTGTTCGATTTTATTTTTCTTTCTTCCCTCTTAGTGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTG] [+] EMBL BM649376 [CCGCGCCTGCTGCAGGACCACATCGATGAGATAGGCGCGACGGGTGGTATACCGTTCTACATTCTGAAGCCGGTGCTGGAACGGGCCAATCCGACTCAGCTGCTCCATCTGGAACACTTCAATCCGCACTTTGTCGAGGACAGTGATGTTCTGTGGGAGCAGCACTGTAAACGTACCTTCCGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGCTCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAACAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCACCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCACCCGCGGCACGTGTAGCTGCATTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGGTTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAACCACGCAA ] [+] EMBL BX619266 [ GCAGCACTGTAAACGTACCTTCCGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGCTCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAACAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCACCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCACCCGCGGCACGTGTAGCTGCACTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGGTTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCNAGCGCAAGTTTTTCAGCCCACCAAACCACGCNAAGCTCCAAATGATGGCAAAAGTATTGTCCTCCATGAGGGGTTNCAAAACCAGCTTCCGGCGTTANGATACCTGGACTATTACTCCCCCAAAGAGTGT ] [+] EMBL BX621042 [ GCGGTTACGAGTAGCGGNTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAACCACGCAAAGCTCC AATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGCTTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGCACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAATGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTACTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAATTACGTTTTACATCGTCACTCAAACGCCTTATTTATGCTATGTCTCTTTAATATCATCTTTTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCAT ] [+] EMBL BX608452 [ AAACCACGCAAAGCTCC AATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGCTTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGCACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAATGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTACTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAATTACGTTTTACATCGTCACTCAAACGCCTTA TTATGCTATGTCTCTTTAATATCATCTTTTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGTGAGCGTGTGTTCGATTTTATTTTTCTTTCTTCCCTCTTAGTGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTG] consensusID : consensus_6733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence [CCGCCCACGCGTCCGCCACGCGTCCGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCTACACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGAGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTGCCTATTATACTATGTACGTAAAATACATATTATTTGAAATTTT] [+] EMBL BM606747 [CCGCCCACGCGTCCGCCACGCGTCCGGTAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCTACACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGAGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATGTTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTGCCTATTATACTATGTACGTAAAATACATATTATTTGAAATTTT] [+] EMBL BM646916 [ AAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAACGGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCTACACAGAACAAGTCCAGCGCCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGGAACTGAGTTTATCATGTCATTGATTGTGTGTGTGTGAGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATGTTCTGATCGATGCAGTGTGGTTTGCGGATATACATATTAAAAGTATAGGACACAGTTTACAGCGGAGGGCGTGTAATGAGCGGATCGTTTATGTTTGTTATATCCAATCGTTTGCCTATTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6733#0 CCGCGCCTGCTGCAGGACCACATCGATGAGATAGGCGCGACGGGTGGTATACCGTTCTAC 60 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 ATTCTGAAGCCGGTGCTGGAACGGGCCAATCCGACTCAGCTGCTCCATCTGGAACACTTC 120 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 AATCCGCACTTTGTCGAGGACAGTGATGTTCTGTGGGAGCAGCACTGTAAACGTACCTTC 180 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CGTTCGAAGCAGCGCAACGAAGAGGAGCTGGAAACGTGGCGAGAAATGTTCCTGCGCTGC 240 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TCCGAGGAGCGGGATGCGAAGCTGAGGAGCCTCACGCAGAATATTAAGCTGTCGCAGGAA 300 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CAGGCGGCGGCTCCAATACGTAAAACGCAGCTAGCGTACGTCGACTCCGCCGTAAAGCCA 360 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CCGCGCAGTGTAATAAGCAAGCAGGTCAAATACGGCACGGCTCGTGCGCCGGTCGTTTCA 420 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CCCGCGGCACGTGTAGCTGCATTGAAGGCAGGCAATGTGGCCCAGGCCGGTGACGCGCGG 480 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TTACGAGTAGCGGCTGGTGTGCGCGATAATGCTCAAGCGCAAGTTTTTCAGCCCACCAAA 540 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CCACGCAAAGCTCCAATGATGGCAAAAGTATTGTCCTCCATGAAGGGTTTCAAAACCAGC 600 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TTCCGGCGTTAGGATACCTGGACTATTACTCCCCCAAAGAGTGTCGACTGTAGCGGGAGC 660 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 ACTGTTCAAGAAGGACTGCTCGATTTGGTACAACACGGCGCCCTCCGGAGATGCAACCAA 720 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TGGCTCTAGGTTGTGGCGTTCAATAACACACGAAACAACGCATTACACTCATCTAGTTTA 780 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CTCCTTCTTAAATCACTTTTTGAACGCGGTGTTAGTTTTTTTTTTAAAGTGTTTTCTAAA 840 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TTACGTTTTACATCGTCACTCAAACGCCTTATTTATGCTATGTCTCTTTAATATCATCTT 900 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TTACAAATCGATATGTGCATGTCTACGCTGAGTTAAATGCAGGTTATATAGTGCAGTTGG 960 consensus_6733#1 --------------------------------CCGCCCACGCGTC-CGCCACGCGTCCGG 27 * ** ** ** consensus_6733#0 TAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTACCGAAC 1020 consensus_6733#1 TAAAATATATATGACAACAAGTAGAATCGATCTCGCTATGCGCAGCACCAACTTCCGAAC 87 ***************************************************** ****** consensus_6733#0 GGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACCCCTGCACAGAACAAGTCCAGCG 1080 consensus_6733#1 GGCTATTAGTAAATGATTGTATAAAAAGGTATCAAACC--TACACAGAACAAGTCCAGCG 145 ************************************** * ****************** consensus_6733#0 CCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCA 1140 consensus_6733#1 CCATGGGCTACCCTATACAGCCTGAGTGCGGTGTATGAAGTAACTGAGTTTATCATGTCA 205 ************************************************************ consensus_6733#0 TTGATTGTGTGTGTGTGTGAGCGTGTGTTCGATTTTATTTTTCTTTCTTCCCTCTTAGTG 1200 consensus_6733#1 TTGATTGTGTGTGTGTG--AGCGTGTGTTTGATTTTATTTTTCTTTCTTCCCTCTTAATG 263 ***************** ********** *************************** ** consensus_6733#0 TTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTAC 1260 consensus_6733#1 TTCTGATCGATGCAGTGTGGTTTGTGGATATACATATTAAAAGTATAGGACACAGTTTAC 323 ************************************************************ consensus_6733#0 AGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTG------ 1314 consensus_6733#1 AGCGGAGGGCGTGTAATGAGCGGTTCGTTTATGTTTGTTATATCCAATCGTTTGCCTATT 383 ****************************************************** consensus_6733#0 ------------------------------------- consensus_6733#1 ATACTATGTACGTAAAATACATATTATTTGAAATTTT 420 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||