These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence [AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCAAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACATACAAGCGGAACGTTAAAACGAGCACAGGCTAGAGGCGATCGTTTTTGGAGGGGGAATGGTGGGCTTGCCACCAGCAACATCCATTTGACGATGCTCCATACCTCAATATGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTGT] [+] EMBL BX467775 [AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCAA ] [+] EMBL BM634627 [ ccGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACATACAAGCGGAACGTTAAAACGAGCACAGGCTAGAGGCGATCGTTTTTGGAGGGGGAATGGTGGGCTTGCCACCAGCAACATCCATTTGACGATGCTCCATACCTCAATATGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTGT] [+] EMBL BX614290 [ CTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACATACAAACGGA ] consensusID : consensus_6736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCCCCCCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAAT] [+] EMBL BX627913 [CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCCCCCCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAAT] consensusID : consensus_6736#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCACAAGCTACTAGATGCGATCGTTTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATTTAGTTGACGATGCTCCATACCTCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTACGTTGTACGTTCCTTCTTTTTGATTGGATGTTGCTTTTCCTTATGCTTATGACGTAAAGCGCAACGCTTCGGGAAAGAGTTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAATGGCAACAGGAAAGGGCATCACAATGTGTACGTTTCTCCCGTAGCTGATGGATGGACAGACGACTCCCCTTTCCCCAAAGGTACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATGCTGTAAGCGCACTGTAAGTGAAACTTGGGCAGCCAGCGACAAACAACAGTCACAAAACGTATGTACCGTATAAAAAACACACACACACACAAACACATACCCGTCTCGCCCAACAGGAGATTCGAAAAACGGAAG] [+] EMBL BM606809 [CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCACAAGCTACTAGATGCGATCGTTTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATTTAGTTGACGATGCTCCATACCTCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTACGTTGTACGTTCCTTCTTTTTGATTGGATGTTGCTTTTCCTTATGCTTATGACGTAAAGCGCAACGCTTCGGGAAAGAGTTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAATGGCAACAGGAAAGGGCATCACAATGTGTACGTTTCTCCCGTAGCTGATGGATGGACAGACGACTCCCCTTTCCCCAAAGGTACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATGCTGTAAGCGCACTGTAAGTGAAACTTGGGCAGCCAGCGACAAACAACAGTCACAAAACGTATGTACCGTATAAAAAACACACACACACACAAACACATACCCGTCTCGCCCAACAGGAGATTCGAAAAACGGAAG] consensusID : consensus_6736#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [AGAATCGCCACGAGGTGTAGTACCGTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCG] [+] EMBL BX469134 [AGAATCGCCACGAGGTGTAGTACCGTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6736#1 CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTA 60 consensus_6736#3 ------------------------------------------------------------ consensus_6736#0 ------------------AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTA 42 consensus_6736#2 ---------------------CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCA 39 consensus_6736#1 GAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCC----CC 116 consensus_6736#3 ------------------------------------------------------------ consensus_6736#0 GAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCC----CC 98 consensus_6736#2 CAAGCTACTAGATGCGATCGTTTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATT 99 consensus_6736#1 CCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCT 176 consensus_6736#3 ------------------------------------------------------------ consensus_6736#0 CCACCCAAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCT 158 consensus_6736#2 TAGTTGACGATGCTCCATACCTCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTC 159 consensus_6736#1 TGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAG 236 consensus_6736#3 ------------------------------------------------------------ consensus_6736#0 TGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAG 218 consensus_6736#2 TACGTTGTACGTTCCTTCTTTTTGAT-TGGATGTTGCTTTTCCTTATGCTTATGACGTAA 218 consensus_6736#1 TTTCTTATACTCATTATCAG-TTTGTAACCGTTTTAC----TACGATGCCATTTGTAAAT 291 consensus_6736#3 ------AGAATCGCCACGAGGTGTAGTACCGTTT-AC----TACGATGCCATTTGTAAAT 49 consensus_6736#0 TTTCTTATACTCATTATCAG-TTTGTAACCGTTTTAC----TACGATGCCATTTGTAAAT 273 consensus_6736#2 AGCGCAACGCTTCGGGAAAGAGTTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAA 278 * * ** * * ** * * ****** ** ** consensus_6736#1 GTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTT-ATTAGCT--TTCATTTTCGG 348 consensus_6736#3 GTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCT--TTCATTTTCGG 107 consensus_6736#0 GTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCT--TTCATTTTCGG 331 consensus_6736#2 TGGCAACAGGAAAGGGCATCACAATGTGTACGTTTCTCCCGT-AGCTGATGGATGGACAG 337 ** * * * * * * * *** * * **** * ** * * consensus_6736#1 ATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTT 408 consensus_6736#3 ATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTT 167 consensus_6736#0 ATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTT 391 consensus_6736#2 ACGACTCCCCTTTCCCCAAAGGTACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATG 397 * * * * * * * * * * ** * *** *** * * consensus_6736#1 CGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGT 468 consensus_6736#3 CGTGGGGGGCTGAAATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGT 227 consensus_6736#0 CGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGT 451 consensus_6736#2 C-TGTAAGCGCACTGTAAGTGAAACTTGGGCAGCC--AGCGACAAACAACAGT------- 447 * ** * * ***** * * * * *** *** * consensus_6736#1 TCTTCAAAACGGGCGTAGATCGC-ACAAACGCTTGCGCGATCGAGAACCCGCTGATGA-G 526 consensus_6736#3 TCTTCAAAACGGGCGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGA-G 286 consensus_6736#0 TCTTCAAAACGGGCGTAGATCGC-ACAAACGCTTGCGCGATCGAGAACCCGCTGATGA-G 509 consensus_6736#2 --CACAAAACGTATGTACCGTATAAAAAACACACACACACACAAACACATACCCGTCTCG 505 ******* *** * **** * * * * * ** * * * consensus_6736#1 CAACACATTACATTCGACAAGTCAAT---------------------------------- 552 consensus_6736#3 CAACACATTACATTCG-------------------------------------------- 302 consensus_6736#0 CAACACATTACATTCGACAAGTCAATTACATACAAGCGGAACGTTAAAACGAGCACAGGC 569 consensus_6736#2 CCCAACAGGAGATTCGAAAAACGGAAG--------------------------------- 532 * *** * ***** consensus_6736#1 ------------------------------------------------------------ consensus_6736#3 ------------------------------------------------------------ consensus_6736#0 TAGAGGCGATCGTTTTTGGAGGGGGAATGGTGGGCTTGCCACCAGCAACATCCATTTGAC 629 consensus_6736#2 ------------------------------------------------------------ consensus_6736#1 ------------------------------------------------------- consensus_6736#3 ------------------------------------------------------- consensus_6736#0 GATGCTCCATACCTCAATATGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTGT 684 consensus_6736#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||