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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 986 fasta sequence
[TTTAGCGCCTTGTTTTATT-AAAAAAAATGCACCTTCAATCATGCTGACGTCACTTAAGTATCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATACTCATCTACCTTACTTTACAAATAATAATACCTTCTTGTTTTTTTTTATTTACTGCAAGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCTTTACGCGGTACGACGGTCCATCGAGCCCGTCCGGGAAGAAGGGTGCATCGCGCGTTACGAGCGGTTCGAACTGCGTCTTCCACTTGGCTTTG]
[+] EMBL CNS08PRH [TTTAGCGCCTTGTTTTATT AAAAAAAATGCACCTTCAATCATGCTGACGTCACTTAAGTATCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATACTCATCTACCTTACTTTACAAATAATAATACCTTCTTGTTTTTTTTTATTTACTGCAAGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGAACTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTACAAAAAAGGTAGGCCCACGATCGTAGTGTCGAGCGTGTTGCGCACACG ]
[+] EMBL CNS08FBH [ ATTAAAAAAAAATTCACCTTCAATCATGCTGACGTCACTTAAGTATCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATACTCATCTACCTTACTTTACAAATAATAATACCTTCTTTTTTTTTTTTATTTACTGCAAGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGA ]
[-] EMBL BX625111 [ AGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCT ]
[-] EMBL BM577788 [ TTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACACGGTAGcgg ]
[-] EMBL BX603298 [ gGGGGGGATTAAGCGATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTGCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTTAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTGCTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTGGTGTCGAGCGAGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCTTTACGCGGTACGACGGTCCATCGAGCCCGTCCGGGAAGAAGGGTGCATCGCGCGTTACGAGCGGTTCGAACTGCGTCTTCCACTTGGCTTTG]
consensusID : consensus_6737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[CAAGATACTTGTTAAATTCGAATCCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACCGGACGCGTGGGCGG]
[-] EMBL BM589298 [CAAGATACTTGTTAAATTCGAATCCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6737#0 TTTAGCGCCTTGTTTTATTAAAAAAAATGCACCTTCAATCATGCTGACGTCACTTAAGTA 60
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATAC 120
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TCATCTACCTTACTTTACAAATAATAATACCTTCTTGTTTTTTTTTATTTACTGCAAGAT 180
consensus_6737#1 ------------------------------------------------------CAAGAT 6
******
consensus_6737#0 ACTTGTTAAATTCGAATCC-ATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGC 239
consensus_6737#1 ACTTGTTAAATTCGAATCCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGC 66
******************* ****************************************
consensus_6737#0 GCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATC 299
consensus_6737#1 GCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATC 126
************************************************************
consensus_6737#0 CTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGC 359
consensus_6737#1 CTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGC 186
************************************************************
consensus_6737#0 CCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTC 419
consensus_6737#1 CCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTC 246
************************************************************
consensus_6737#0 CCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCC 479
consensus_6737#1 CCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCC 306
************************************************************
consensus_6737#0 TCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGC 539
consensus_6737#1 TCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGC 366
************************************************************
consensus_6737#0 TTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTG 599
consensus_6737#1 TTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTG 426
************************************************************
consensus_6737#0 AGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGG 659
consensus_6737#1 AGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGG 486
************************************************************
consensus_6737#0 TGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCG 719
consensus_6737#1 TGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCG 546
************************************************************
consensus_6737#0 AGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCC 779
consensus_6737#1 AGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCC 606
************************************************************
consensus_6737#0 GGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTG 839
consensus_6737#1 GGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTG 666
************************************************************
consensus_6737#0 TCGAGCGTGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCTTTACG 899
consensus_6737#1 TCGAGCGTGTCGCGCACCGGACGCGTGGGCGG---------------------------- 698
***************** * *** *
consensus_6737#0 CGGTACGACGGTCCATCGAGCCCGTCCGGGAAGAAGGGTGCATCGCGCGTTACGAGCGGT 959
consensus_6737#1 ------------------------------------------------------------
consensus_6737#0 TCGAACTGCGTCTTCCACTTGGCTTTG 986
consensus_6737#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||