These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence [AGATCGCCCCGAGGNCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCCAACGATGGCGGACAAGGATGCTACTGCTGCCAAGGACGACGAGCACGACAACGACGAAGACAACGGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGGTAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACCTGCAAAAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATTTCAGGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGNCTCTCTGGAGAGCTGCTGTATACGTGCAAAGGCACCACACACTTGTCGGTAGTGTGTATGAAATGTACAAAAAGAAGAAGAAGAAAAAAATAACAAAATTCTGTT] [+] EMBL AL693430 [AGATCGCCCCGAGGNCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAA ] [+] EMBL BX621618 [ ACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCCAACGATGGCGGACAAGGATGCTACTGCTGCCAAGGACGACGAGCACGACAACGACGAAGACAACGGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGGTAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACCTGCAAAAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATTTCAGGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGNCTCTCTGGAGAGCTGCTGTATACGTGCAAAG ] [+] EMBL BX608205 [ CAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGTGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGTAACGCCGCCAACGATGGCGGACAAGGATGCTACTGCTGCCAAGGACGACGAGCACGACAACGACGAAGACAACGGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGGTAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACTTGC AAAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATTTCATGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGTCTCTCTGGAGAGCTGCTGTATACGTGCAAAGGCACCACACACTTGTCGGTAGTGTGTATGAAATGTACAAAAAGAAGAAGAAGAAAAAAATAACAAAATTCTGTT] consensusID : consensus_6738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [GCAAGAATCGCGCACGAGGAGCGTGGATGACGAGAAAAAGCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTTTCTTGGGACTGGTTAGCAAATTCAAAGCTAATCTACTGCAACTTCCCAAAGATCCCAACTTGAAACACTATCTAAACAGAATTTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCAACGATGGCGGACAAGGATGCTACTGNTGCAAGGACGACGGAGCACGACAACGACGAAAGACAACGGTGGCGGCT] [+] EMBL BX467427 [GCAAGAATCGCGCACGAGGAGCGTGGATGACGAGAAAAAGCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTTTCTTGGGACTGGTTAGCAAATTCAAAGCTAATCTACTGCAACTTCCCAAAGATCCCAACTTGAAACACTATCTAAACAGAATTTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCGCAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCAACGATGGCGGACAAGGATGCTACTGNTGCAAGGACGACGGAGCACGACAACGACGAAAGACAACGGTGGCGGCT] consensusID : consensus_6738#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [GATGGCCCCGGGTTTAGCTGGTGCTGCAGGAGCTGNCAAGGCACGGAAACTAATCATTGGCCACAATATGCTGCTGGATTTGTTCTACGTGCTGCGCCAATTCTTTAAACCACTGCCGGCGGACTATCAAGAGTTTAAGAAGCTGACGAAGGAATATTTCCCACTCCTTCTAGATACCAAGTATCTGTGCACGAATGCGGAGATTAAAGTGAATGTCAACTCCTCCGGTACTAGCACACGTGTACGATGCGGTAAGCAAGGCACCATTCTCGATCCCTACGGTGCATCCCGAGCTGCCGGATTATCAGTACAGCGTGGNTGACGAGAAAAAGCCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTATCTTGGGACTGGTTTAGCAAATTCAAAAGCTAATCTACTGCAACTTCCCCAAAGATCCCAAGTTGAAACACTATCTAAACCAGAATTTTCATCACCGCTAAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAA] [+] EMBL AL694237 [GATGGCCCCGGGTTTAGCTGGTGCTGCAGGAGCTGNCAAGGCACGGAAACTAATCATTGGCCACAATATGCTGCTGGATTTGTTCTACGTGCTGCGCCAATTCTTTAAACCACTGCCGGCGGACTATCAAGAGTTTAAGAAGCTGACGAAGGAATATTTCCCACTCCTTCTAGATACCAAGTATCTGTGCACGAATGCGGAGATTAAAGTGAATGTCAACTCCTCCGGTACTAGCACACGTGTACGATGCGGTAAGCAAGGCACCATTCTCGATCCCTACGGTGCATCCCGAGCTGCCGGATTATCAGTACAGCGTGGNTGACGAGAAAAAGCCACGAAGCAGGCTACGATGCTTACCTTACGGGGTTATGTATCTTGGGACTGGTTTAGCAAATTCAAAAGCTAATCTACTGCAACTTCCCCAAAGATCCCAAGTTGAAACACTATCTAAACCAGAATTTTCATCACCGCTAAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAA] consensusID : consensus_6738#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CCCCGAGNTTAATTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAA] [+] EMBL AL694326 [CCCCGAGNTTAATTTCATCACCCGCCTAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTTCTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTTCGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCGTAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAACTTTGCACAATTTACGCAAATGAAACTCGCCCTGGAGCTAAACGAGGACGAAACGGTTCGAGTAGTGCTGGCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTCAATCAACGGCCGAGCGGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6738#0 ------------------------------------------------------------ consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 GCAAGAATCGCGCACGAGGAGCGTGGATGACGAGAAAAAGCACGAAGCAGGCTACGATGC 60 consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 ------------------------------------------------------------ consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 TTACCTTACGGGGTTATGTTTCTTGGGACTGGTTAGCAAATTCAAAGCTAATCTACTGCA 120 consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 --------------------------------------------AGATCGCCC-CGAGGN 15 consensus_6738#3 ------------------------------CCCCGAGNTTAATTTCATCACCCGCCTAAC 30 consensus_6738#1 ACTTCCCAAAGATCCCAACTTGAAACACTATCTAAACAGAATTTTCATCACCCGCCTAAC 180 consensus_6738#2 ---------------------------------------------GATGGCCC-CGGGTT 14 ** *** * consensus_6738#0 CGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTT 75 consensus_6738#3 CGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTT 90 consensus_6738#1 CGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAACGCGGGAACATATCTT 240 consensus_6738#2 TAGCTGGTGCTGCAGGAGCTGNCAAGGCACGGAAACTAATCATTGGCCACAATATG-CTG 73 * * ** * * ** * *** * * ** ** ** ** ** consensus_6738#0 CTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTT 135 consensus_6738#3 CTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTT 150 consensus_6738#1 CTACGCAACGTTCCCAGAAACCTGGCGCACCGGGGACATCCAGAACAAGTTCAAACCGTT 300 consensus_6738#2 CTG-GATTTGTTCT-----ACGTGCTGCGCCA---ATTCTTTAAACCACTGCCGGCGGAC 124 ** * **** ** ** ** ** * *** * * * * * consensus_6738#0 CGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCG 195 consensus_6738#3 CGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCG 210 consensus_6738#1 CGGCCCCGTGCACGTTAGCTGGCTGGACAATACGTCCGCGTTTGTGGCATTGCACAACCG 360 consensus_6738#2 TATCAAGAGTTTAAGAAGCTGACGAAGGAATATTTCCCACTCCTTCTAGATACCAAGTAT 184 * ***** * **** *** * * * * * consensus_6738#0 TAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAA 255 consensus_6738#3 TAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAA 270 consensus_6738#1 TAGTGCCGCGAGCTCGGTGCTGAAAATGATCGGCTATCACTCCGGCTTCAAAGTGTACAA 420 consensus_6738#2 CTGTGC-ACGAATGCGGAGATTAAAGTGAATGTCAACTCCTCCGGTACTA----GCACA- 238 **** *** *** * * *** *** * * * ****** * * *** consensus_6738#0 CTTTGCACAATTTACGCAAATGAAACTGCAACGCCCTGGAGCTAAACGAGGA---CGAAA 312 consensus_6738#3 CTTTGCACAATTTACGCAAATGAAACT----CGCCCTGGAGCTAAACGAGGA---CGAAA 323 consensus_6738#1 CTTTGCACAATTTACGCAAATGAAACT----CGCCCTGGAGCTAAACGAGGA---CGAAA 473 consensus_6738#2 -CGTGTACGATGCG-GTAAGCAAGGCAC---CATTCTCGATCCCTACGGTGCATCCCGAG 293 ** ** ** * ** * * * ** ** * *** * * * consensus_6738#0 CGGTTCGAGTAGTGCTG--GCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTC 370 consensus_6738#3 CGGTTCGAGTAGTGCTG--GCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTC 381 consensus_6738#1 CGGTTCGAGTAGTGCTG--GCCCCGGAGAAGATGCAGGAGTTCGAAGCGCACAACCAGTC 531 consensus_6738#2 CTGCCGGATTATCAGTACAGCGTGGNTGACGAGAAAAAGCCACGAAGCAGGCTACGATGC 353 * * ** ** * ** * ** ** * ****** * ** * * consensus_6738#0 AATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCG 430 consensus_6738#3 AATCAACGGCCGAGCGGGGAA--------------------------------------- 402 consensus_6738#1 AATCAACGGCCGAGCGGGGAAGAAAAAGGACAAAAAGAAGGCCAAAAAATAGAGCGTCCG 591 consensus_6738#2 TTACCTTACGGGGTTATGTATCTTGGGACTGGTTTAGCAAATTCAAAAGCTAATCTACTG 413 * * * * consensus_6738#0 CAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGCCAACGATG 490 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 CAAACGATCACCACTGCCGCCAAGCGGAAGGGTATGGATGAGGCAACGCCGC-AACGATG 650 consensus_6738#2 CAACT--TCCCCAAAGATCCCAAGTTGAAACAC-TATCTAAACCAGAATTTTCATCACCG 470 consensus_6738#0 GCGGACAAGGATG--CTACTGCTGCCAAGGACGACGAGCACGACAACGACGAA-GACAAC 547 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 GCGGACAAGGATG--CTACTGNTGCAAGGACGACGGAGCACGACAACGACGAAAGACAAC 708 consensus_6738#2 CTAAACCGACGTGAACTATATTTATCTGAACGGGAAAGAACCCACACAAA---------- 520 consensus_6738#0 GGTGGCGGCTGGAGAACGGTTAAAAAGGCGCGCAAAACATTCACCGATAATAACGATTGG 607 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 GGTGGCGGCT-------------------------------------------------- 718 consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 TAGCGAAGGAAAGGGCGCAAACGTGTAGGTGAGTGCTGTTTTTAGATAAGCGACCTGCAA 667 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 ------------------------------------------------------------ consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 AAAAAAAACGCGCATAAGGAGAATCGTCTCTGGTGCGCCGCACTGTAGTAACCGCACATT 727 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 ------------------------------------------------------------ consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 TCAGGACAGACCGTCGTGTGCGGCATCTTTCTCTTTCTCTCTCCTGGNCTCTCTGGAGAG 787 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 ------------------------------------------------------------ consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 CTGCTGTATACGTGCAAAGGCACCACACACTTGTCGGTAGTGTGTATGAAATGTACAAAA 847 consensus_6738#3 ------------------------------------------------------------ consensus_6738#1 ------------------------------------------------------------ consensus_6738#2 ------------------------------------------------------------ consensus_6738#0 AGAAGAAGAAGAAAAAAATAACAAAATTCTGTT 880 consensus_6738#3 --------------------------------- consensus_6738#1 --------------------------------- consensus_6738#2 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||