These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 881 fasta sequence [CCGCGCCGCTCCCGAACGCAAGTCGCGTAATTCTGTCCGGCTGTCCCTGTTCGTGCGGGGCGTGCAAAAAAGGGCTTTGCCATCGAAGGAACGTCCCTCGGTAAGCAGCTGTGCGGTTCCGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTCACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTGAGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAAACCGACAAGACTACCGTCGGTGTCCCGGCCCCGGGTCATGGTATTATCGAGGAGATCTACGTCGCGGACGCCACCACCGTGCTGTCGCGTGCCATCGCCGAGCTGGGCATCTACCCGGCGGTCGATCCGCTCGATTCGACCTCGCGTATCATGGACCCGAACATCATCGGCGCCGAGCACTACAACATCGCCCGTGGCGTGCAGAAGATCCTGCAGGACTACAAGTCGCTCCAGGACAT] [+] EMBL BM620431 [CCGCGCCGCTCCCGAACGCAAGTCGCGTAATTCTGTCCGGCTGTCCCTGTTCGTGCGGGGCGTGCAAAAAAGGGCTTTGCCATCGAAGGAACGTCCCTCGGTAAGCAGCTGTGCGGTTCCGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTCACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTGAGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAAACCGACAAGACTACCGTCGGTGTCCCGGCCCCGG ] [+] EMBL BM587821 [ ccGAACGTCCCTCGGTAAGCAGCTGTGCGGTTCCGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTCACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTGAGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCG ] [+] EMBL CNS09CHZ [ gaCGATGG CGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGCAG CCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGCACCCCAGCAGGGCACTGTAACCGGTTCGCGATCCTACCACCAGGGGCGTCGATTGTTGCCGAGCGTCGCCGTCCGGTCCGCGGTCACCGACAGTGGCAGACGTTGCGAATCCGTTCGAAACTCTATCAAGGCACAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAAATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGAAGTTTGAGAAGAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAGACCGACAAGACTACCGTCGGTGTCCCGGCCCCGGGTCATGGTATTATCGAGGAGATCTACGTCGCGGACGCCACCACCGTGCTGTCGCGTGCCATCGCCGAGCTGGGCATCTACCCGGCGGTCGATCCGCTCGATTCGACCTCGCGTATCATGGACCCGAACATCATCGGCGCCGAGCACTACAACATCGCCCGTGGCGTGCAGAAGATCCTGCAGGACTACAAGTCGCTCCAGGACAT] consensusID : consensus_6740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence [CCGCCCACGCGTCCGAACGAGGCTCCGCAAGAAGAATCGGCAGCACCATTGGAAGACACCGAATTACCGGAACAGTCGGAAACAACCGTACCGACGGAAGAATCTGCACCGTCAACATCGGTCCCAGAAGCAGAGACAACGGCGCAATCAACCAATGCGGAAGAGGAACAGTCCCCCGCCGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCTAGCGAAAACACAGAATCGGCTGTAGCGACGGAACAGACGGAAGCATCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCATCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGCAGGACGCTTCTACAGCCGGAGTTCCAGAAGCACCAGAGCAGGTAGAAGAGGAAACGGGTTCCGAAACGGTACCATCAGAGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAATCCCCCGTCGTACCATCGGAGGAACCAGAGGCTGCTGAACCCACCGGCACCGAGGCACCAGAGACTCCTGAAGCCTCCAGCGCACCCGAAACAACTGCAGCT] [+] EMBL BM589066 [CCGCCCACGCGTCCGAACGAGGCTCCGCAAGAAGAATCGGCAGCACCATTGGAAGACACCGAATTACCGGAACAGTCGGAAACAACCGTACCGACGGAAGAATCTGCACCGTCAACATCGGTCCCAGAAGCAGAGACAACGGCGCAATCAACCAATGCGGAAGAGGAACAGTCCCCCGCCGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCTAGCGAAAACACAGAATCGGCTGTAGCGACGGAACAGACGGAAGCATCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCATCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGC ] [+] EMBL BM606618 [ ccgGAGGAACAGTCCCCCGCCGAAACGGAATTGCCGGAAGAGAACAATTCGCCGGCAGAAGAAGAATCTACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGACAGCGAAAACACGGAATCGGCTGTAGCGACGGAACAGACGGAAGCTTCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCGTCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGCAGGACGCTTCTACAGCCGGAGTTCCAGAAGCACCAGAGCAGGTAGAAGAGGAAACGGGTTCCGAAACGGTACCATCAGAGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAATCCCCCGTCGTACCATCGGAGGAACCAGAGGCTGCTGAACCCACCGGCACCGAGGCACCAGAGACTCCTGAAGCCTCCAGCGCACCCGAAACAACTGCAGCT] consensusID : consensus_6740#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCATTGCGACGACGCGCTCCTCGCAGTCCGATTCGATCGAGCAGATGGCACAGCAGCAGCAGCAGCCCAACCGCAGCGACAGTACCGACTCGATCGAGGCCCAGCAGCAGCTCCAACAGCAGCAGAAGCTCCAGCACCATCAGACGTACCATCAGACCACCACGCAGCAGACGCTGAGCGACACGAAGCGAGACTCGCTGGAATCACTGGCCGCCAGCAGCAGCGACAATCAGAGCGGATTCAGCAGTCCCACCAAGTCTGCCCACGGCTCTCGACCACTGTCCGACAGTGGAGTTGGAGCAAGCGGTACAACCGCTCATCATCAGCAGCAGCTGCAGCAGCAGCAGTTCCACCACCAAACAACGACGATGTCCACGCACACGGTCAGCACCGGTGGGCGCACGATGCAGAAGGACATATCGGCC] [+] EMBL BM651621 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCATTGCGACGACGCGCTCCTCGCAGTCCGATTCGATCGAGCAGATGGCACAGCAGCAGCAGCAGCCCAACCGCAGCGACAGTACCGACTCGATCGAGGCCCAGCAGCAGCTCCAACAGCAGCAGAAGCTCCAGCACCATCAGACGTACCATCAGACCACCACGCAGCAGACGCTGAGCGACACGAAGCGAGACTCGCTGGAATCACTGGCCGCCAGCAGCAGCGACAATCAGAGCGGATTCAGCAGTCCCACCAAGTCTGCCCACGGCTCTCGACCACTGTCCGACAGTGGAGTTGGAGCAAGCGGTACAACCGCTCATCATCAGCAGCAGCTGCAGCAGCAGCAGTTCCACCACCAAACAACGACGATGTCCACGCACACGGTCAGCACCGGTGGGCGCACGATGCAGAAGGACATATCGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6740#0 CCGCGC-CGCTCCCGAACGCAAGTCGCGTAATTCTGTCCGGCTGTCCCTGTTCGTGCGGG 59 consensus_6740#2 CCGCCCACGCGTCCGCCCACGCGTCCGGGCATTGCGACGACGCGCTCCTCGCAGTCCGAT 60 consensus_6740#1 CCGCCCACGCGTCCGAACG-AGGCTCCGCAAGAAGAATCGGCAGCACC-----ATTGGAA 54 **** * *** *** * * * * * ** * * consensus_6740#0 GCGTGCAAAAAAGGGCTTTGCCATCGAAGGAACGTCCCTCGGTAAGCAGCTGTGCGGTTC 119 consensus_6740#2 TCGATCGAGCAGATGGCACAGCA--GCAGCAGCAGCCCAACCGCAGCGACAGTACCGACT 118 consensus_6740#1 GACACCGAATTACCGGAACAGTCGGAAACAACCGTACCGACGGAAGAATCTGCACCGTCA 114 * * * * * * ** ** * * * * consensus_6740#0 CGAGCCGGATGCAGCAAGCGAAATTCCGTGCGCTTTGACAACGTTAAAATTTCACCTTTC 179 consensus_6740#2 CGATCGAGGCCCAGCAGCAGCTCCAACAGCAGCAGAAGCTCCAGCACCATCAGACGTACC 178 consensus_6740#1 ACATC-GGTCCCAGAAGCAGAGACAACGGCGCAATCAACCAATGCGGAAGAGGAACAGTC 173 * * * *** * * * * * * * consensus_6740#0 ACTTGCTTCTGTCATCCAAGGGGGAGAGCAACGTGACGAACAAACACCGCAAGGCACCTG 239 consensus_6740#2 ATCAGACCACCACGCAGCAGACGCTGAGCGACACGAAGCG-AGACTCGCTGGAATCACTG 237 consensus_6740#1 CCCCGC---CGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCA--GTAGAAGAATCA 228 * * ** * * * consensus_6740#0 AGTGAGTGAGTGAGCGATGGCCGGAATACTTTCGATATCGTCGCGAAATTTGCCCCGCGC 299 consensus_6740#2 GCCGCCAGCAGCAGCGACAATCAGAGCGGATTCAGCAGTCCCACCAAGTCTGCCC---AC 294 consensus_6740#1 ACCACCTTAGC--GCCACCATCGGAAGGC-----GTATCCGGACAGGAATCAGTTGCAAC 281 ** * * ** * * * consensus_6740#0 AGCCCTCCGTCTCGGTCTGCGTTCATTGGAAGGCCAATCAGGACCCCAGCAGGGCACTGT 359 consensus_6740#2 GGCTCTCGACCACTGTCCGA---CAGTGGAGTTGGAGCAAGCGGTACAACCGCTCATCAT 351 consensus_6740#1 GGAAG-CAGCCGAGGTAGAAGC-TAGCGAAAACACAGAATCGGCTGTAGCGACGGA--AC 337 * * * ** * * * * * * * consensus_6740#0 AACCGGTTCGCGATCCTACCACCAGGGGCGTCGATT-GTTGCCGAGCGTCGCCGTCCG-G 417 consensus_6740#2 CAGCAG----CAGCTGCAGCAGCAGCAGT-TCCACC-ACCAAACAACGACGATGTCCACG 405 consensus_6740#1 AGACGG----AAGCATCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCA 393 * * * * * * * * * * consensus_6740#0 TCCGCGGTCACCGACAGTGG-CAGACGTTGCGAATCCGTTCGAAACTCTATCAA--GGCA 474 consensus_6740#2 CACACGGTCAGCACCGGTGGGCGCACGATGCAGAAGGACATATCGGCC------------ 453 consensus_6740#1 TCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACG 453 * *** * * * *** * * consensus_6740#0 CAGGGATGGGCTGTGAACGAGCGGGCCATCTTCACCTCGGCCCGCATGCTGTCGTCGGAA 534 consensus_6740#2 ------------------------------------------------------------ consensus_6740#1 GAGGGCGTAGCTGCTGA-GACCGAAGTCTCGCAGGACGCTTCTACAGCCGGAGTTCCAGA 512 consensus_6740#0 ATCGTGAAGGTGCCTCCGTTTGCCGATTCCGTGTCCGAGGGCGATGTGA-AGTTTGAGAA 593 consensus_6740#2 ------------------------------------------------------------ consensus_6740#1 AGCACCAGAGCAGGTAGAAGAGGAAACGGGTTCCGAAACGGTACCATCAGAGCCTGAGGT 572 consensus_6740#0 GAAAGTCGGCGATGCGGTGGCCGCCGACGAGGTGGTGATGGAGATTGAAACCGACAAGAC 653 consensus_6740#2 ------------------------------------------------------------ consensus_6740#1 GGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTT-CGGAAC 631 consensus_6740#0 TACCGTCGGTGTCCCGGCCCCGGGTCATGGTATTATCGAGGAGATCTA---CGTCGCGGA 710 consensus_6740#2 ------------------------------------------------------------ consensus_6740#1 CGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAG 691 consensus_6740#0 CGCCACCACCGTGCTGTCGCGTGCCATCGCCGAGCTGGGCATCTACCCGGCGGTCGATCC 770 consensus_6740#2 ------------------------------------------------------------ consensus_6740#1 AGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAATCCC 751 consensus_6740#0 GCTCGATTCGACCTCGCGTATCATGGACC-CGAACATCATCGGCGCCGAGCACTACAACA 829 consensus_6740#2 ------------------------------------------------------------ consensus_6740#1 CCGTCGTACCATCGGAGGAACCAGAGGCTGCTGAACCCACCGGCACCGAG-GCACCAGAG 810 consensus_6740#0 TCGCCCGTGGCGTGCAGAAGATCCTGCAGGACTACAAGTCGCTCCAGGACAT 881 consensus_6740#2 ---------------------------------------------------- consensus_6740#1 ACTCCTGAAGCCTCCAGCGCACCCGAAACAACTGCAGCT------------- 849 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||