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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence
[CCGCCCACGCGTCCGTTTTTTTTTTCTATGTTTTCTGTCTCTCGAACACAGACACACAGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTACGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCCTGTTTTTTTTTTTTGTTGTTCTGGCAATTTTCTACTAACACTATTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAAAAATTAGAACTTACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTTTCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAGAAAAAAAATACAAAATTTGTTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGGAAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGCAAAAGGAAAATGGAAAAGTTAAACAAAAAAAGGGAAAATGATACATCAATACACTACAAATAATGCACTAAGATAATGAAGAAGATAGAAACAAAGCAGAATACAAATACAAAAAAAAAAACAAAGAGAGATAGAGACAAACATCCACTGAAAATGAAAAAGGGTGAAAAGATGATGAAACTCAGACAAGGTTAAACTATATTTGACATAAAAGAAGAGCAGCAGAAGGAGGAGGAGAGAAAATTGTAGTAGGAGGGTAGGGAGAAAATGCGTATAAAAAAAAATGCGCAAAACAAAAAAACAAACAAACAAACGTTGAGAAATAAAATGTGAAAAATTATATTTACCGG]
[+] EMBL BM609254 [CCGCCCACGCGTCCGTTTTTTTTTTCTATGTTTTCTGTCTCTCGAACACAGACACACAGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTACGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCCTGTTTTTTTTTTTTGTTGTTCTGGCAATTTTCTACTAACACTATTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAAAAATTAGAACTTACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTTTCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAGAAAAAAAATACAAAATTTGTTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGGAAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGC ]
[-] EMBL BM652929 [ GTAACGCGAAGGAAAAATTAGAACTTACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTTTCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAG AAAAAAATACAAAATTTGTTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGGAAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGCAAAAGGAAAATGGAAAAGTTAAACAAAAAAAGGGAAAATGATACATCAATACACTACAAATAATGCACTAAGATAATGAAGAAGATAGAAACAAAGCAGAATACAAATACAAAAAAAAAAACAAAGAGAGATAGAGACAAACATCCACTGAAAATGAAAAAGGGTGAAAAGATGATGAAACTCAGACAAGGTTAAACTATATTTGACATAAAAGAAGAGCAGCAGAAGGAGGAGGAGAGAAAATTGTAGTAGGAGGGTAGGGAGAAAATGCGTATAAAAAAAAATGCGCAAAACAAAAAAACAAACAAACAAACGTTGAGAAATAAAATGTGAAAAATTATATTTACCGG]
consensusID : consensus_6741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence
[TGCCCACGGATTATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTNTTNNATANTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTGCGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCGTTTTTAGTTGTTCTGGCAATTTTCTACTAACACTACTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGACACAACATTAGGAACTTACAAAACTATAATCAAGCACCATGGTACAATCGAAAGACACGGGCGTCCTTGCCTTCATTTACGGTATCNTCAACTTAGCCATGGACACAAAGGAGAGGAAGAAGCANGAANAATACAANNACTTCTGTTAGGCACACNNAATGATAACATCANACCACAANACAACAAACGAACCAA]
[+] EMBL AL693388 [TGCCCACGGATTATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTNTTNNATANTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTGCGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCGTTTTTAGTTGTTCTGGCAATTTTCTACTAACACTACTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGACACAACATTAGGAACTTACAAAACTATAATCAAGCACCATGGTACAATCGAAAGACACGGGCGTCCTTGCCTTCATTTACGGTATCNTCAACTTAGCCATGGACACAAAGGAGAGGAAGAAGCANGAANAATACAANNACTTCTGTTAGGCACACNNAATGATAACATCANACCACAANACAACAAACGAACCAA]
[+] EMBL BX606966 [ TTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTG TTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTTTT TTTTTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTAATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTGCGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCGTTTTTTGTTGTTCTGGCAATTTTCTACTAACACTACTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGT ]
consensusID : consensus_6741#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[AATCGCCCGAGGNCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTCTGTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTTTTTTTTTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGCACTAACGCTACACGCAACACACACTAAACACCTNTGCCGCTACGCGCTTTCCATTGTGCGCGGACGTTGGCTTGGTGCGCTTCTCTCTCTGCCTTGCTCTCCTGGCAACTCTTCTCCTACTAACACTACCTCCCACCCCACCCCACCCACCTGCAGCCACANCCCACACACACCACANCCTGCCGCCCTGCCTACCACGCCGCAACGCGCACAACAACTCTAGCAACTTTACAAAACCCTACTAATCAAACAC]
[+] EMBL AL931873 [AATCGCCCGAGGNCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTCTGTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTTTTTTTTTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGCACTAACGCTACACGCAACACACACTAAACACCTNTGCCGCTACGCGCTTTCCATTGTGCGCGGACGTTGGCTTGGTGCGCTTCTCTCTCTGCCTTGCTCTCCTGGCAACTCTTCTCCTACTAACACTACCTCCCACCCCACCCCACCCACCTGCAGCCACANCCCACACACACCACANCCTGCCGCCCTGCCTACCACGCCGCAACGCGCACAACAACTCTAGCAACTTTACAAAACCCTACTAATCAAACAC]
consensusID : consensus_6741#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[AGAATCGCCCGAGGAATTTCTCTCCTTTTTTGCCTTACCTTTTCCCCCCACTTCTGTTCCAAACGCTCTGGAATTCGTTTATAAAAAAACAACAATCATTTCTACACTCTTAGTAGAGCCGGCTGACGCTGCTGTGCAACAGGCCACAGCGTCAAGCAGAAGGCGCGATAAAAAAAATATTATTTACATAACAAAACAAAAATAACGCATAGAATACTTACCTTTTAAAATATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTCGATGAAACTGNAAGTATACGTTTTAAATAAGCATTCTTACCCCCTTTCCCCTCTGTCCACTCCCCCGGAAACAGGNTTTTNTNCTACGTTATTCCTGGTCTCATCGGAACACACAAACACTGAACATTAGGCAACAGAAAACCGATCGGTCACATATCATCAATCCCCTCCCGGTTGTGATAATGCAAAGGAA]
[+] EMBL AL693472 [AGAATCGCCCGAGGAATTTCTCTCCTTTTTTGCCTTACCTTTTCCCCCCACTTCTGTTCCAAACGCTCTGGAATTCGTTTATAAAAAAACAACAATCATTTCTACACTCTTAGTAGAGCCGGCTGACGCTGCTGTGCAACAGGCCACAGCGTCAAGCAGAAGGCGCGATAAAAAAAATATTATTTACATAACAAAACAAAAATAACGCATAGAATACTTACCTTTTAAAATATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTCGATGAAACTGNAAGTATACGTTTTAAATAAGCATTCTTACCCCCTTTCCCCTCTGTCCACTCCCCCGGAAACAGGNTTTTNTNCTACGTTATTCCTGGTCTCATCGGAACACACAAACACTGAACATTAGGCAACAGAAAACCGATCGGTCACATATCATCAATCCCCTCCCGGTTGTGATAATGCAAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6741#2 ------------------------------------------------------------
consensus_6741#3 ------------------------------------------------------------
consensus_6741#1 ------------------------------------------------------------
consensus_6741#0 CCGCCCACGCGTCCGTTTTTTTTTTCTATGTTTTCTGTCTCTCGAACACAGACACACAGA 60
consensus_6741#2 -------------------------------------------AATCG--CCCGAGGNCT 15
consensus_6741#3 -----------------------------------------AGAATCG--CCCGAGGAAT 17
consensus_6741#1 ---TGCCCACGGATTATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCT 57
consensus_6741#0 CATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAA--TGCAAGAACC 118
* * *
consensus_6741#2 T---CAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAG--AAAGGCAGCAACGCACG 70
consensus_6741#3 TTCTCTCCTTTTTTGCCTTACCTTTTCCCCCCACTTCTGTTCCAAACGCTCTGGAATTCG 77
consensus_6741#1 T---CAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAG--AAAGGCAGCAACGCACG 112
consensus_6741#0 CGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACA-CAGTTTTTG 177
* * * * * *
consensus_6741#2 AAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTT 130
consensus_6741#3 TTTATAAAAA-AACAACAATCATTTCTACACTCTTAGTAGAGCCGGC-TGACGCT-GCTG 134
consensus_6741#1 AAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTT 172
consensus_6741#0 ATAACGTACAGAAACACATAAACACTTACGTACGCGTTTCCATTGTGCGGGAGTTGGTTG 237
* * * ** * ** * * * * * *
consensus_6741#2 TTCGTATTTGTTTTTTTTT--TCTGTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTT 188
consensus_6741#3 TGCA-ACAGGCCACAGCGT--CAAGCAGAAGGCGCGAT---AAAAAAAATATTA------ 182
consensus_6741#1 TTCGTATTTGTTTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTT 232
consensus_6741#0 ---GTGCCTGTTTTTTTTT--TTTGTTGTTCTGGCAATTT-TCTACTAACACTATTCCCA 291
* * * * * * **
consensus_6741#2 CCCCCTCTGTTCCACTCCCCGGAACAGTTTTTTT--TTCTACGTTTTCTGTCTCTCGAAC 246
consensus_6741#3 ----------TTTACATAACAAAACAAAAATAAC--GCATAGAATACTTACCTTTTAAA- 229
consensus_6741#1 CCCCCTCTGTTCCACTCCCCGGAACAGTNTTNNATANTCTACGTTTTCTGTCTCTCGAAC 292
consensus_6741#0 CCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAAAAATTAGAACT 351
* * **** * *
consensus_6741#2 ACACACACACTGACATAAGCACGAAACGATCG-----TAAATATCATCATCCCTCCGTTG 301
consensus_6741#3 ----ATATATTG---TATGTGTAATATGGCCG-----TGTAGATTCTATTTCGATAGCTT 277
consensus_6741#1 ACACACACACTGACATAAGCACGAAACGATCG-----TAAATATCATCATCCCTCCGTTG 347
consensus_6741#0 TACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTT 411
* * * * * ** * * *
consensus_6741#2 TGATA-ATGCAAGAACCCGCGATCTGATCTCATTTTA--TTTTTGGTCATCCCGGACTGA 358
consensus_6741#3 CAGCATATGAAGCGAACCTCTAGCAG--CGCGCGCCG--AGAAAGGCAGCAACGCACGAA 333
consensus_6741#1 TGATA-ATGCAAGAACCCGCGATCTGATCTCATTTTA--TTTTTGGTCATCCCGGACTGA 404
consensus_6741#0 TCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAGAAAAAAAATACAAAATTTG 471
* * * ** * *
consensus_6741#2 ATGGACACACAGTTTT-TGCACTAACGCTA-CACGCAACACACACT---AAACACCTNTG 413
consensus_6741#3 GACGACG-ACGACGAC-GATGATGATTAAA-TGTGTAGCA-ACACT---GAA-ACGATGG 385
consensus_6741#1 ATGGACACACAGTTTTTGATAACGTACAGA-AACACATAA-ACACTTGCGTACGCGTTTC 462
consensus_6741#0 TTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGG 531
* * * * ** * *
consensus_6741#2 CCGC-TACGCGCTTTCCATTGTGCGCGGAC---GTTGGCTTGGTGCGCTTCTCTCTCTGC 469
consensus_6741#3 TAGC-TTCGA---TGAAACTGNAAGTATAC---GTT--TTAAATAAGCAT-TCTTACCCC 435
consensus_6741#1 CATTGTGCGGGAGTTGGTTGGTGCGTTTTTA--GTTGTTCTGGCAATTTTCTACTAACAC 520
consensus_6741#0 AAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGCAAAAGGAA 591
*
consensus_6741#2 CTTGCTCT--CCTGGCAACTCTTCTCCTACTAACACTACCTCCCACCCCACCCCA-CCCA 526
consensus_6741#3 CTTTCCCC--TCTGTCCACTCCCCCGGAAACAGGNTTTTNTNCTACGTTATTCCT-GGTC 492
consensus_6741#1 TACTCCCA--CCCA-CCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAC 577
consensus_6741#0 AATGGAAAAGTTAAACAAAAAAAGGGAAAATGATACATCAATACACTACAAATAATGCAC 651
* * * *
consensus_6741#2 CCTGCAGCCACANCCCACACACACCACANCCTGCCGCC---CTGCCTACCACGCCGCAAC 583
consensus_6741#3 TCATCGG----AACACACAAACACTGAACATTAGGCAA---CAGAAAACCGATCGGTCAC 545
consensus_6741#1 ACAACATTAGGAACTTACAAA-ACTATA-ATCAAGCAC---CATGGTACAATCGAAAGAC 632
consensus_6741#0 TAAGATAATGAAGAAGATAGAAACAAAGCAGAATACAAATACAAAAAAAAAAACAAAGAG 711
* * * * ** * * *
consensus_6741#2 GCGCACA-ACAACTCTAGCAACTTTACAAAACCCTACTAATCAAACAC------------ 630
consensus_6741#3 ATAT-CA-TCAATCCCCTCCCGGTTGTGATAA--TGCAAAGGAA---------------- 585
consensus_6741#1 ACGGGCG-TCCTTGCCTTCATTTACGGTATCNTCAACTTAGCCATGGACACAAAGGAGAG 691
consensus_6741#0 AGATAGAGACAAACATCCACTGAAAATGAAAAAGGGTGAAAAGATGATGAAACTCAGACA 771
* * * *
consensus_6741#2 ------------------------------------------------------------
consensus_6741#3 ------------------------------------------------------------
consensus_6741#1 GAAGAAGCANGAANAATACAANNACTTCTGTTAGGCACACNNAATGATAACATCANACCA 751
consensus_6741#0 AGGTTAAACTATATTTGACATAAAAGAAGAGCAGCAGAAGGAGGAGGAGAGAAAATTGTA 831
consensus_6741#2 ------------------------------------------------------------
consensus_6741#3 ------------------------------------------------------------
consensus_6741#1 CAANACAACAAACGAACCAA---------------------------------------- 771
consensus_6741#0 GTAGGAGGGTAGGGAGAAAATGCGTATAAAAAAAAATGCGCAAAACAAAAAAACAAACAA 891
consensus_6741#2 ------------------------------------------
consensus_6741#3 ------------------------------------------
consensus_6741#1 ------------------------------------------
consensus_6741#0 ACAAACGTTGAGAAATAAAATGTGAAAAATTATATTTACCGG 933
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||