These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence [CCGCCCACGCGTCCGTTTTTTTTTTCTATGTTTTCTGTCTCTCGAACACAGACACACAGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTACGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCCTGTTTTTTTTTTTTGTTGTTCTGGCAATTTTCTACTAACACTATTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAAAAATTAGAACTTACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTTTCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAGAAAAAAAATACAAAATTTGTTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGGAAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGCAAAAGGAAAATGGAAAAGTTAAACAAAAAAAGGGAAAATGATACATCAATACACTACAAATAATGCACTAAGATAATGAAGAAGATAGAAACAAAGCAGAATACAAATACAAAAAAAAAAACAAAGAGAGATAGAGACAAACATCCACTGAAAATGAAAAAGGGTGAAAAGATGATGAAACTCAGACAAGGTTAAACTATATTTGACATAAAAGAAGAGCAGCAGAAGGAGGAGGAGAGAAAATTGTAGTAGGAGGGTAGGGAGAAAATGCGTATAAAAAAAAATGCGCAAAACAAAAAAACAAACAAACAAACGTTGAGAAATAAAATGTGAAAAATTATATTTACCGG] [+] EMBL BM609254 [CCGCCCACGCGTCCGTTTTTTTTTTCTATGTTTTCTGTCTCTCGAACACAGACACACAGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTACGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCCTGTTTTTTTTTTTTGTTGTTCTGGCAATTTTCTACTAACACTATTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAAAAATTAGAACTTACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTTTCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAGAAAAAAAATACAAAATTTGTTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGGAAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGC ] [-] EMBL BM652929 [ GTAACGCGAAGGAAAAATTAGAACTTACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTTTCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAG AAAAAAATACAAAATTTGTTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGGAAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGCAAAAGGAAAATGGAAAAGTTAAACAAAAAAAGGGAAAATGATACATCAATACACTACAAATAATGCACTAAGATAATGAAGAAGATAGAAACAAAGCAGAATACAAATACAAAAAAAAAAACAAAGAGAGATAGAGACAAACATCCACTGAAAATGAAAAAGGGTGAAAAGATGATGAAACTCAGACAAGGTTAAACTATATTTGACATAAAAGAAGAGCAGCAGAAGGAGGAGGAGAGAAAATTGTAGTAGGAGGGTAGGGAGAAAATGCGTATAAAAAAAAATGCGCAAAACAAAAAAACAAACAAACAAACGTTGAGAAATAAAATGTGAAAAATTATATTTACCGG] consensusID : consensus_6741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence [TGCCCACGGATTATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTNTTNNATANTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTGCGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCGTTTTTAGTTGTTCTGGCAATTTTCTACTAACACTACTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGACACAACATTAGGAACTTACAAAACTATAATCAAGCACCATGGTACAATCGAAAGACACGGGCGTCCTTGCCTTCATTTACGGTATCNTCAACTTAGCCATGGACACAAAGGAGAGGAAGAAGCANGAANAATACAANNACTTCTGTTAGGCACACNNAATGATAACATCANACCACAANACAACAAACGAACCAA] [+] EMBL AL693388 [TGCCCACGGATTATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTNTTNNATANTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTGCGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCGTTTTTAGTTGTTCTGGCAATTTTCTACTAACACTACTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGACACAACATTAGGAACTTACAAAACTATAATCAAGCACCATGGTACAATCGAAAGACACGGGCGTCCTTGCCTTCATTTACGGTATCNTCAACTTAGCCATGGACACAAAGGAGAGGAAGAAGCANGAANAATACAANNACTTCTGTTAGGCACACNNAATGATAACATCANACCACAANACAACAAACGAACCAA] [+] EMBL BX606966 [ TTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTG TTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTTTT TTTTTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTAATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGATAACGTACAGAAACACATAAACACTTGCGTACGCGTTTCCATTGTGCGGGAGTTGGTTGGTGCGTTTTTTGTTGTTCTGGCAATTTTCTACTAACACTACTCCCACCCACCACCACTGAGCAACCAAAACAACTGCGCCTGT ] consensusID : consensus_6741#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [AATCGCCCGAGGNCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTCTGTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTTTTTTTTTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGCACTAACGCTACACGCAACACACACTAAACACCTNTGCCGCTACGCGCTTTCCATTGTGCGCGGACGTTGGCTTGGTGCGCTTCTCTCTCTGCCTTGCTCTCCTGGCAACTCTTCTCCTACTAACACTACCTCCCACCCCACCCCACCCACCTGCAGCCACANCCCACACACACCACANCCTGCCGCCCTGCCTACCACGCCGCAACGCGCACAACAACTCTAGCAACTTTACAAAACCCTACTAATCAAACAC] [+] EMBL AL931873 [AATCGCCCGAGGNCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTTTCGTATTTGTTTTTTTTTTCTGTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTTCCCCCTCTGTTCCACTCCCCGGAACAGTTTTTTTTTCTACGTTTTCTGTCTCTCGAACACACACACACTGACATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAATGCAAGAACCCGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACACAGTTTTTGCACTAACGCTACACGCAACACACACTAAACACCTNTGCCGCTACGCGCTTTCCATTGTGCGCGGACGTTGGCTTGGTGCGCTTCTCTCTCTGCCTTGCTCTCCTGGCAACTCTTCTCCTACTAACACTACCTCCCACCCCACCCCACCCACCTGCAGCCACANCCCACACACACCACANCCTGCCGCCCTGCCTACCACGCCGCAACGCGCACAACAACTCTAGCAACTTTACAAAACCCTACTAATCAAACAC] consensusID : consensus_6741#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [AGAATCGCCCGAGGAATTTCTCTCCTTTTTTGCCTTACCTTTTCCCCCCACTTCTGTTCCAAACGCTCTGGAATTCGTTTATAAAAAAACAACAATCATTTCTACACTCTTAGTAGAGCCGGCTGACGCTGCTGTGCAACAGGCCACAGCGTCAAGCAGAAGGCGCGATAAAAAAAATATTATTTACATAACAAAACAAAAATAACGCATAGAATACTTACCTTTTAAAATATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTCGATGAAACTGNAAGTATACGTTTTAAATAAGCATTCTTACCCCCTTTCCCCTCTGTCCACTCCCCCGGAAACAGGNTTTTNTNCTACGTTATTCCTGGTCTCATCGGAACACACAAACACTGAACATTAGGCAACAGAAAACCGATCGGTCACATATCATCAATCCCCTCCCGGTTGTGATAATGCAAAGGAA] [+] EMBL AL693472 [AGAATCGCCCGAGGAATTTCTCTCCTTTTTTGCCTTACCTTTTCCCCCCACTTCTGTTCCAAACGCTCTGGAATTCGTTTATAAAAAAACAACAATCATTTCTACACTCTTAGTAGAGCCGGCTGACGCTGCTGTGCAACAGGCCACAGCGTCAAGCAGAAGGCGCGATAAAAAAAATATTATTTACATAACAAAACAAAAATAACGCATAGAATACTTACCTTTTAAAATATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCTTCAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAGAAAGGCAGCAACGCACGAAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTTCGATGAAACTGNAAGTATACGTTTTAAATAAGCATTCTTACCCCCTTTCCCCTCTGTCCACTCCCCCGGAAACAGGNTTTTNTNCTACGTTATTCCTGGTCTCATCGGAACACACAAACACTGAACATTAGGCAACAGAAAACCGATCGGTCACATATCATCAATCCCCTCCCGGTTGTGATAATGCAAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6741#2 ------------------------------------------------------------ consensus_6741#3 ------------------------------------------------------------ consensus_6741#1 ------------------------------------------------------------ consensus_6741#0 CCGCCCACGCGTCCGTTTTTTTTTTCTATGTTTTCTGTCTCTCGAACACAGACACACAGA 60 consensus_6741#2 -------------------------------------------AATCG--CCCGAGGNCT 15 consensus_6741#3 -----------------------------------------AGAATCG--CCCGAGGAAT 17 consensus_6741#1 ---TGCCCACGGATTATATTGTATGTGTAATATGGCCGTGTAGATTCTATTTCGATAGCT 57 consensus_6741#0 CATAAGCACGAAACGATCGTAAATATCATCATCCCTCCGTTGTGATAA--TGCAAGAACC 118 * * * consensus_6741#2 T---CAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAG--AAAGGCAGCAACGCACG 70 consensus_6741#3 TTCTCTCCTTTTTTGCCTTACCTTTTCCCCCCACTTCTGTTCCAAACGCTCTGGAATTCG 77 consensus_6741#1 T---CAGCATATGAAGCGAACCTCTAGCAGCGCGCGCCGAG--AAAGGCAGCAACGCACG 112 consensus_6741#0 CGCGATCTGATCTCATTTTATTTTTGGTCATCCCGGACTGAATGGACACA-CAGTTTTTG 177 * * * * * * consensus_6741#2 AAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTT 130 consensus_6741#3 TTTATAAAAA-AACAACAATCATTTCTACACTCTTAGTAGAGCCGGC-TGACGCT-GCTG 134 consensus_6741#1 AAGACGACGACGACGACGATGATGATTAAATGTGTAGCAACACTGAAACGATGGTAGCTT 172 consensus_6741#0 ATAACGTACAGAAACACATAAACACTTACGTACGCGTTTCCATTGTGCGGGAGTTGGTTG 237 * * * ** * ** * * * * * * consensus_6741#2 TTCGTATTTGTTTTTTTTT--TCTGTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTT 188 consensus_6741#3 TGCA-ACAGGCCACAGCGT--CAAGCAGAAGGCGCGAT---AAAAAAAATATTA------ 182 consensus_6741#1 TTCGTATTTGTTTTTTTTTTTCTGTTTTGTTTTACGTTTTTAATAAGCATCTTACCCCTT 232 consensus_6741#0 ---GTGCCTGTTTTTTTTT--TTTGTTGTTCTGGCAATTT-TCTACTAACACTATTCCCA 291 * * * * * * ** consensus_6741#2 CCCCCTCTGTTCCACTCCCCGGAACAGTTTTTTT--TTCTACGTTTTCTGTCTCTCGAAC 246 consensus_6741#3 ----------TTTACATAACAAAACAAAAATAAC--GCATAGAATACTTACCTTTTAAA- 229 consensus_6741#1 CCCCCTCTGTTCCACTCCCCGGAACAGTNTTNNATANTCTACGTTTTCTGTCTCTCGAAC 292 consensus_6741#0 CCCACCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAAAAATTAGAACT 351 * * **** * * consensus_6741#2 ACACACACACTGACATAAGCACGAAACGATCG-----TAAATATCATCATCCCTCCGTTG 301 consensus_6741#3 ----ATATATTG---TATGTGTAATATGGCCG-----TGTAGATTCTATTTCGATAGCTT 277 consensus_6741#1 ACACACACACTGACATAAGCACGAAACGATCG-----TAAATATCATCATCCCTCCGTTG 347 consensus_6741#0 TACAAAACTATAATCAACACATGGTACAATCGAAAGACACGGGCGTCCTTGCTTTATTTT 411 * * * * * ** * * * consensus_6741#2 TGATA-ATGCAAGAACCCGCGATCTGATCTCATTTTA--TTTTTGGTCATCCCGGACTGA 358 consensus_6741#3 CAGCATATGAAGCGAACCTCTAGCAG--CGCGCGCCG--AGAAAGGCAGCAACGCACGAA 333 consensus_6741#1 TGATA-ATGCAAGAACCCGCGATCTGATCTCATTTTA--TTTTTGGTCATCCCGGACTGA 404 consensus_6741#0 TCGGTTTTTCAATTAGCCATGGACAAAAGGAGAGGAAGAAGAAAAAAAATACAAAATTTG 471 * * * ** * * consensus_6741#2 ATGGACACACAGTTTT-TGCACTAACGCTA-CACGCAACACACACT---AAACACCTNTG 413 consensus_6741#3 GACGACG-ACGACGAC-GATGATGATTAAA-TGTGTAGCA-ACACT---GAA-ACGATGG 385 consensus_6741#1 ATGGACACACAGTTTTTGATAACGTACAGA-AACACATAA-ACACTTGCGTACGCGTTTC 462 consensus_6741#0 TTAGGAAAAAAATGATAAACATCAACAAAAACAAACAAACCGAACCAACCAAAACACAGG 531 * * * * ** * * consensus_6741#2 CCGC-TACGCGCTTTCCATTGTGCGCGGAC---GTTGGCTTGGTGCGCTTCTCTCTCTGC 469 consensus_6741#3 TAGC-TTCGA---TGAAACTGNAAGTATAC---GTT--TTAAATAAGCAT-TCTTACCCC 435 consensus_6741#1 CATTGTGCGGGAGTTGGTTGGTGCGTTTTTA--GTTGTTCTGGCAATTTTCTACTAACAC 520 consensus_6741#0 AAACCGAAAAGGAACACACAAAAGAAAGGCATCGGAGCATCGGTGTGCAAGCAAAAGGAA 591 * consensus_6741#2 CTTGCTCT--CCTGGCAACTCTTCTCCTACTAACACTACCTCCCACCCCACCCCA-CCCA 526 consensus_6741#3 CTTTCCCC--TCTGTCCACTCCCCCGGAAACAGGNTTTTNTNCTACGTTATTCCT-GGTC 492 consensus_6741#1 TACTCCCA--CCCA-CCACCACTGAGCAACCAAAACAACTGCGCCTGTAACGCGAAGGAC 577 consensus_6741#0 AATGGAAAAGTTAAACAAAAAAAGGGAAAATGATACATCAATACACTACAAATAATGCAC 651 * * * * consensus_6741#2 CCTGCAGCCACANCCCACACACACCACANCCTGCCGCC---CTGCCTACCACGCCGCAAC 583 consensus_6741#3 TCATCGG----AACACACAAACACTGAACATTAGGCAA---CAGAAAACCGATCGGTCAC 545 consensus_6741#1 ACAACATTAGGAACTTACAAA-ACTATA-ATCAAGCAC---CATGGTACAATCGAAAGAC 632 consensus_6741#0 TAAGATAATGAAGAAGATAGAAACAAAGCAGAATACAAATACAAAAAAAAAAACAAAGAG 711 * * * * ** * * * consensus_6741#2 GCGCACA-ACAACTCTAGCAACTTTACAAAACCCTACTAATCAAACAC------------ 630 consensus_6741#3 ATAT-CA-TCAATCCCCTCCCGGTTGTGATAA--TGCAAAGGAA---------------- 585 consensus_6741#1 ACGGGCG-TCCTTGCCTTCATTTACGGTATCNTCAACTTAGCCATGGACACAAAGGAGAG 691 consensus_6741#0 AGATAGAGACAAACATCCACTGAAAATGAAAAAGGGTGAAAAGATGATGAAACTCAGACA 771 * * * * consensus_6741#2 ------------------------------------------------------------ consensus_6741#3 ------------------------------------------------------------ consensus_6741#1 GAAGAAGCANGAANAATACAANNACTTCTGTTAGGCACACNNAATGATAACATCANACCA 751 consensus_6741#0 AGGTTAAACTATATTTGACATAAAAGAAGAGCAGCAGAAGGAGGAGGAGAGAAAATTGTA 831 consensus_6741#2 ------------------------------------------------------------ consensus_6741#3 ------------------------------------------------------------ consensus_6741#1 CAANACAACAAACGAACCAA---------------------------------------- 771 consensus_6741#0 GTAGGAGGGTAGGGAGAAAATGCGTATAAAAAAAAATGCGCAAAACAAAAAAACAAACAA 891 consensus_6741#2 ------------------------------------------ consensus_6741#3 ------------------------------------------ consensus_6741#1 ------------------------------------------ consensus_6741#0 ACAAACGTTGAGAAATAAAATGTGAAAAATTATATTTACCGG 933 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||