These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 839 fasta sequence [GCACGGATAATGCGTATGTTGCGAGTTCTTTTGTTAGTTTTGCAAATGATCGGCCACTCGCAGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTCCGTAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAAACAATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATAAGGTCTTACACCAAAGCTGGATACAACGAGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACGTTACATGGGGTTACATANGGTGCATGGGTTACGCAAATATTTGATGCATATGTTTTGTCATACTTCACAAGGAAGCTCCTCACTTACCG] [+] EMBL BX628286 [GCACGGATAATGCGTATGTTGCGAGTTCTTTTGTTAGTTTTGCAAATGATCGGCCACTCGCAGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTCCGTAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAAACAATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATAAGGTCTTACACCAAAGCTGGATACAACGAGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACGTTACATGGGGTTACATANGGTGCATGGGTTACGCAAATATTTGATGCATATGTTTTGTCATACTTCACAAGGAAGCTCCTCACTTACCG] [+] EMBL BM577974 [ ccgGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTGCAATCGTGCCTTGCAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTGAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACAATGATGTCAAAGATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTGCCGGATTCGGCAAGCGAGTTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATTATGCAGCCAGCTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGCATTTCCCACAAGGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAAGCTGGATACAAAGAGTGAAAATCGCAGCGTTTGT ] consensusID : consensus_6745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGAAAGCGTTCAACGGCAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCCGATGAAACCGATGAATCTTCGGAAGACGAAGACGATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAATAACAAGGCGTCTAACTCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCATGGTTGACCGAGTGAATATGTACCGCAGAAAATTGTAGGTAAATTAGCACTAAGTGTTTCCTTTGCAGTGTGTAACTCCTATTATTTCAATTTTATATGCAGCCAGCTTACAGAATTAATCTGTAAATCATTTACATTAGCAGGTCTAATGTTGCATTTCTCACAAGGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAA] [+] EMBL BM611879 [CCGAAAGCGTTCAACGGCAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTGCAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACCGGCGCTATGGATGCCGATGAAACCGATGAATCTTCGGAAGACGAAGACGATGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAATAACAAGGCGTCTAACTCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAGTTGACCGCGGCTCATGGTTGACCGAGTGAATATGTACCGCAGAAAATTGTAGGTAAATTAGCACTAAGTGTTTCCTTTGCAGTGTGTAACTCCTATTATTTCAATTTTATATGCAGCCAGCTTACAGAATTAATCTGTAAATCATTTACATTAGCAGGTCTAATGTTGCATTTCTCACAAGGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAA] consensusID : consensus_6745#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [GTGTAGTTTTCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCT-TCGTAATTGGGCCCTAAGTAACAAGGC-GTCTAACG-CTGCATAGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAATTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGGTTACATAGGTTGCATGGGTTACGCAAAAAAAAAAAAAAAAAAAAGGCCCCCTGTGCCCCCCCC] [+] EMBL CNS08X78 [GTGTAGTTTTCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAAGATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCT TCGTAATTGGGCCCTAAGTAACAAGGC GTCTAACG CTGCATAGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAATTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATTATGCAGCCAACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGGTTACATAGGTTGCATGGGTTACGCAAAAAAAAAAAAAAAAAAAAGGCCCCCTGTGCCCCCCCC] [-] EMBL CNS08X79 [ AAATGGGAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCAGACGGGACTGCGTTTAAAGCTACAAATGAAAATAGTGAATGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACCGGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAAGATGAAAAGGTGCAACAAGAGACGTTGCAAGAAAACCTCTCGTAATTGGGCCCTAAGTAACAAGGCGGTCTAACGCCTGCATAGATAGCTTGTTGCGTTTCATGCGAAAAAATCGCCTTTTTATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAATTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATTATGCAGCCCACTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACACGGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGCGAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGGTTACATAGGTTG AAAGGTTACGCAAA ] consensusID : consensus_6745#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [ATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCTGGCGGAACTGCGTTTGAAGCTACAAATGAAAATACTGAATGTGGCCAGGCGACAGTACCAGCGGTGGAACCAGAGAACTTTGTTGACAAATCCGGCGCTATGGATGCTGATGAAACCGACGAATCTTCCGAAGAATAAGACGATGATGTCAAAGATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAAC] [+] EMBL BM580874 [ATGGAAGACGCGATGGAAGCATTGAAAATAGCTGCAATCGATGCTGGCGGAACTGCGTTTGAAGCTACAAATGAAAATACTGAATGTGGCCAGGCGACAGTACCAGCGGTGGAACCAGAGAACTTTGTTGACAAATCCGGCGCTATGGATGCTGATGAAACCGACGAATCTTCCGAAGAATAAGACGATGATGTCAAAGATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAACAAGGCGTCTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6745#1 ------------------------------------------------------------ consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 GCACGGATAATGCGTATGTTGCGAGTTCTTTTGTTAGTTTTGCAAATGATCGGCCACTCG 60 consensus_6745#2 ------------------------------------------------------------ consensus_6745#1 ----CCGAAAGCGTTCAACGGCAAACGGTCGCCATTTTACGCAAGCAAAAGTTATCATTG 56 consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 CAGTTGAAAAGCGTTCAACGGTAAACGGTCGCCATTTTCCGTAAGCAAAAGTTATCATTG 120 consensus_6745#2 ------------------------------------------------------------ consensus_6745#1 CAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTG 116 consensus_6745#3 ------------------------------------ATGGAAGACGCGATGGAAGCATTG 24 consensus_6745#0 CAATCGTGCCTTGTAGGTGGCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTG 180 consensus_6745#2 ----------GTGTAGTTTTCAATAAAGCGCACAAAATGGAAGACGCGATGGAAGCATTG 50 ************************ consensus_6745#1 AAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAA 176 consensus_6745#3 AAAATAGCTGCAATCGATGCTGGCGGAACTGCGTTTGAAGCTACAAATGAAAATACTGAA 84 consensus_6745#0 AAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAA 240 consensus_6745#2 AAAATAGCTGCAATCGATGCAGACGGAACTGCGTTTAAAGCTACAAATGAAAATAGTGAA 110 ******************** * ************* ****************** **** consensus_6745#1 TGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACC 236 consensus_6745#3 TGTGGCCAGGCGACAGTACCAGCGGT------GGAACCAGAGAACTTTGTTGACAAATCC 138 consensus_6745#0 TGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGAGATCTTTGTTGATGAAACC 300 consensus_6745#2 TGTGACCAGTTGACAGTACCAGCGGTCGACATGAAACCAGATATCTTTGTTGATGAAACC 170 **** **** *************** * ******* * ********* ** ** consensus_6745#1 GGCGCTATGGATGCCGATGAAACCGATGAATCTTCGGAAGACGAAGACGATGATGTCAAA 296 consensus_6745#3 GGCGCTATGGATGCTGATGAAACCGACGAATCTTCCGAAGAATAAGACGATGATGTCAAA 198 consensus_6745#0 GGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAAACAATGATGTCAAA 360 consensus_6745#2 GGCGCTATGGATGCTGATGAAACCGATGAATCTTCGGAAGACGAAGACATTGATGTCAAA 230 ************** *********** ******** ***** ** ** ********** consensus_6745#1 GATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAATAAC 356 consensus_6745#3 GATGAAAAGGTGGAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAAC 258 consensus_6745#0 GATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAAC 420 consensus_6745#2 GATGAAAAGGTGCAACGAGAGACGTTGCAAGAAAACCTTCGTAATTGGGCCCTAAGTAAC 290 ************ ****************************************** **** consensus_6745#1 AAGGCGTCTAACTCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTT 416 consensus_6745#3 AAGGCGTCTAAC------------------------------------------------ 270 consensus_6745#0 AAGGCGTCTAACGCCTGCATCGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTT 480 consensus_6745#2 AAGGCGTCTAACGC-TGCATAGATAGCTTGTTGCGTCTCATGCGAAACAATCGCCTTTTT 349 ************ consensus_6745#1 ATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAG 476 consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 ATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAG 540 consensus_6745#2 ATCGATGTACCGGATTCGGCAAGCGAGCTACTAGCGAGCCCCGAGCAGCCAAAGAAATAA 409 consensus_6745#1 TTGACCGCGGCTCATGGTTGACCGAGTGAATATGTACCGCAGAAAATTGTAGGTAAATTA 536 consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 TTGACCGCGGCTCCTGGTTGACCGAGTGAATATGTACCGCAGAAAATT------------ 588 consensus_6745#2 TTTACTGCGGCTCCTGGTTGACCGAGTGGATATGTACCGCAGAAAATT------------ 457 consensus_6745#1 GCACTAAGTGTTTCCTTTGCAGTGTGTAACTCCTATTATTTCAATTTTATATGCAGCCAG 596 consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 --------------------------------------------------ATGCAGCCAA 598 consensus_6745#2 --------------------------------------------------ATGCAGCCAA 467 consensus_6745#1 CTTACAGAATTAATCTGTAAATCATTTACATTAGCAGGTCTAATGTTGCATTTCTCACAA 656 consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 CTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACAC 658 consensus_6745#2 CTTACAGAATTAATCTGTAAATCATTTGCATTAGCAGGTCTAATGTTGGATTTCCCACAC 527 consensus_6745#1 GGATGCAAGAAGGATATTTAATTCGAATTCGATCTTACACCAAA---------------- 700 consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 GGATGCAAGAAGGACATTAAATTCGAATAAGGTCTTACACCAAAGCTGGATACAACGAGC 718 consensus_6745#2 GGATGCAAGAAGGACATTAAATTCGAATACGGTCTTACACCAAAGCTGGATACAACGGGC 587 consensus_6745#1 ------------------------------------------------------------ consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 GAAAATGGTAGCGTTTGTGAATAAAGTCTACGTTACATGGGGTTACATANGGTGCATGGG 778 consensus_6745#2 GAAAATGGTAGCGTTTGTGAATAAAGTCTACCTTACATGGG-TTACATAGGTTGCATGGG 646 consensus_6745#1 ------------------------------------------------------------ consensus_6745#3 ------------------------------------------------------------ consensus_6745#0 TTACGCAAATATTTGATGCATAT---GTTTTGTCATACTTCACAAGGAAGCTCCTCACTT 835 consensus_6745#2 TTACGCAAAAAAAAAAAAAAAAAAAAGGCCCCCTGTGCCCCCCCC--------------- 691 consensus_6745#1 ---- consensus_6745#3 ---- consensus_6745#0 ACCG 839 consensus_6745#2 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||