These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1087 fasta sequence [CTCCACCCGTTTACCCCCGCTCATCCCCGTTCCGGTAACACGGTAACACCGAAATGCCAACAGAAAGTGCCTCCAAAATCGCCGTTATTAGGCCGCATAGACGAATTAATTAATTTAGCACGTAAGCCATAGCCAAACGCGCTGGTGTGTGTGAGTGTGGATTAGAGAAGTAGTGTAGTGTCCCATTGTCGGGAAGCTGGGAGGTTTTTTTTGTCATCTTCATCTGTAAATACCGGCCAATTCCCCTAGTGCAGGCTAGTTTAGTAAGAACTCCTTTTTTATGGGCATAATAAGTACGCTCAAAAAGCTTCCCATTTTCACCTCATTTCCACCCATCCCATCATACACCCAGTCATATCTGTAGTATTGTCTTCCAACACGTGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAAACAAAAAAGCTTAGCGAAGCGAAGATGATCTGTTTTTAGGATCAACAACGAAACAACAGGGTGTGTGTGAGTGGAAACGAAATTTCCAGTGAGTTGGATATCGTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTTTCGGAATCCCTTCCCCCCCTACCTCGAAGGACTCTGATTCTCCCTTGCACCTAGACACATATCCTTCCGCGCGGCAAACGAATTTGCTTCCAACTGGCCGCCACCACCTTCCTACAGGGTTTTTTTTTGTTTTTGACGAATGCTTCCTTGCAAAATAGTAGAACAAAATGAACGATATTAGAAAGAATTAGTTAGATTGTAGCGTACGAGCGTAAGTTGTGTCGAGAAGCTTAGCAAAGATGCCTTAATGCATTTTAAATGAGATTGTTAAGATGAGATGATACAAAAACGAGGTCAAAATTTTTGAAGCATTTATAGCGAGTTTATACGAGTTGAAACACTTTTCTCTTGTTGGCTATAAAACGGGAAAGTAGTTTTGTTGTAAGGCCAACTTCTACTTGCTGTTTTTAGTTTTGTAGGTAATGCACGGCAAAATCCTGTGTTTGTGAGTCCTCTCTCTGTACATAGTGTAAGTAACCGAATAGTGGAGGAATGATGAAGAACACAGTTTGCCGTTCAATAAACAACG] [+] EMBL BX627694 [CTCCACCCGTTTACCCCCGCTCATCCCCGTTCCGGTAACACGGTAACACCGAAATGCCAACAGAAAGTGCCTCCAAAATCGCCGTTATTAGGCCGCATAGACGAATTAATTAATTTAGCACGTAAGCCATAGCCAAACGCGCTGGTGTGTGTGAGTGTGGATTAGAGAAGTAGTGTAGTGTCCCATTGTCGGGAAGCTGGGAGGTTTTTTTTGTCATCTTCATCTGTAAATACCGGCCAATTCCCCTAGTGCAGGCTAGTTTAGTAAGAACTCCTTTTTTATGGGCATAATAAGTACGCTCAAAAAGCTTCCCATTTTCACCTCATTTCCACCCATCCCATCATACACCCAGTCATATCTGTAGTATTGTCTTCCAACACGTGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAAACAAAAAAGCTTAGCGAAGCGAAGATGATCTGTTTTTAGGATCAACAACGAAACAACAGGGTGTGTGTGAGTGGAAACNAAATTTCCAGTGAGTTGGATATCGTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTTTCGGAATCCCTTCCCCCCCTACCTCGAAGGACTCTGATTCTCCCTTGCACCTAGACACATATCCTTCCGCGCGGCAAATGAATTTGCTTCCAACTGGNCGCCACCACCTTCCTACAGGGTTTTTTTTTGTTTTTGACGAATGCTTCCTTGCAAAATAGTAGAACCAAATGAACGATATTAGAAAGAATTAGNTAGATTGTAGCGTACGA ] [+] EMBL BX611656 [ CAACAGAAAGTGCCTCCAAAATCGCCGTTATTAGGCCGCATAGACGAATTAATTAATTTAGCACGTAAGCCATAGCCAAACGCGCTGGTGTGTGTGAGTGTGGATTAGAGAAGTAGTGTAGTGTCCCATTGTCGGGAAGCTGGGAGGTTTTTTTTGTCATCTTCATCTGTAAATACCGGCCAATTCCCCTAGTGCAGGCTAGTTTAGTAAGAACTCCTTTTTTATGGGCATAATAAGTACGCTCAAAAAGCTTCCCATTTTCACCTCATTTCCACCCATCCCATCATACACCCAGTCATATCTGTAGTATTGTCTTCCAACACGTGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAAACAAAAAAGCTTAGCGAAGCGAAGATGATCTGTTTTTAGGATCAACAACGAAACAACAGGGTGTGTGTGAGTGGAAACGAAATTTCCAGTGAGTTGGATATCGTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTTTCGGAATCCCTTCCCCCCCTACCTCGAAGGACTCTGATTCTCCCTTGCACCTAG ] [+] EMBL BX621023 [ TGTGTGAGTGTGGATTAGAGAAGTAGTGTAGTGTCCCATTGTCGGGAAGCTGGGAGGTTTTTTTTGTCATCTTCATCTGTAAATACCGGCCAATTCCCCTAGTGCAGGCTAGTTTAGTAAGAACTCCTTTTTTATGGGCATAATAAGTACGCTCAAAAAGCTTCCCATTTTCACCTCATTTCCACCCATCCCATCATACACCCAGTCATATCTGTAGTATTGTCTTCCAACACGTGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAAACAAAAAAGCTTAGCGAAGCGAAGATGATCTGTTTTTAGGATCAACAACGAAACAACAGGGTGTGTGTGAGTGGAAACGAAATTTCCAGTGAGTTGGATATCGTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTTTCGGAATCCCTTCCCCCCCTACCTCGAAGGACTCTGATTCTCCCTTGCACCTAGACACATATCCTTCCGCGCGGCAAACGAATTTGCTTCCAACTGGCCGCCACCACCTTCCTACAGGGTTTTTTTTTGTTTTTGACGAATGCTTCCTTGCAAAATAGTAGAACAAAATGAACGATATTAGAAAGAATTAGTTAGATTGTAGCGTACGAGCGTAAGTTGTGTCGAGAAGCTTAGCAAAGATGCCTTAATGCATTTTAAATGAGATTGTTAAGAT ] [+] EMBL BX614297 [ GTGCAGGCTAGTTTAGTAAGAACTCCTTTTTTATGGGCATAATAAGTACGCTCAAAAAGCTTCCCATTTTCACCTCATTTCCACCCATCCCATCATACACCCAGTCATATCTGTAGTATTGTCTTCCAACACGTGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAAACAAAAAAGCTTAGCGAAGCGAAGATGATCTGTTTTTAGGATCAACAACGAAACAACAGGGTGTGTGTGAGTGGAAACGAAATTTCCAGTGAGTTGGATATCGTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTTTCGGAATCCCTTCCCCCCCTACCTCGAAGGACTCTGATTCTCCCTTGCACCTAGACACATATCCTTCCGCGCGGCAAACGAATTTGCTTCCAACTGGCCGCCACCACCTTCCTACAGGGTTTTTTTTTGTTTTTGACGAATGCTTCCTTGCAAAATAGTAG ] [-] EMBL BX611655 [ TCGAAGGACTTTGATTCTCCCTTGCACCTAGACACATATCCTTCCGCGCGGCAAACGAATTTGCTTCCAACTGGCCGCCACCACCTTCCTACAGGGTTTTTTTTTGTTTTTGACGAATGCTTCCTTGCAAAATAGTAGAACAAAATGAACGATATTAGAAAGAATTAGTTAGATTGTAGCGTACGAGCGTAAGTTGTGTCGAGAAGCTTAGCAAAGATGCCTTAATGCATTTTAAATGAGATTGTTAAGATGAGATGATACAAAAACGAGGTCAAAATTTTTGAAGCATTTATAGCGAGTTTATACGAGTTGAAACACTTTTCTCTTGTTGGCTATAAAACGGGAAAGTAGTTTTGTTGTAAGGCCAACTTCTACTTGCTGTTTTTAGTTTTGTAGGTAATGCACGGCAAAATCCTGTGTTTGTGAGTCCTCTCTCTGTACATAGTGTAAGTAACCGAATAGTGGAGGAATGATGAAGAACACAGTTTGCCGTTCAATAAACAACG] consensusID : consensus_6746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence [CCAGGNTTANGCTGGTGTGTGTGAGTGTCGATACAGAAGTAGTGTANATGTCCCATTGTCGGGAAGCTGGGAGCGTTTNTTTTTTGTCATCTTCATCTGTAAATACCGGCCAATTCCCCTAGTGCAGGCTAGTTTATGTAAGAACTCCTTATTTATTGGGCATAATAAGTACGCTCAAAAAGCTTCCCATNTTCACCTCAGTTTCCACCCATCCCATCATACANCCAGCTCATATCTGTAGCTATTGTCTTCCAACACGATGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAANCAAAAGAAGACTTAGTCGAAGCGAAGATGATCTGTGTTTGAGGATCAACAACGACANCAAGCACGGGTGTGTTGTGAGTGGAAACGAAATTTCCAGTGACCGTTCGGAGTATCGCTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTATTACGGAATCCCTTACCCCCCCTACTCGAAGGACTACTGATTCTCCCTTGCAACTAGACACATATTCTTCCGCGCGGCAAACGAATTTTGCTTCCAACTGGCCCGGGCAAACCAACCTTTCCTAAGCAGGGGGTNTTCNTCTCTCGTCTATNGACGAAAGCTTCCTCTGNCCAACATAAGGTACGAACCCAACACATGCAACGATACTTCAGCACACGAAATTAGTTTAAGATTTGTTCGCGTACAGAACGTTAAGTTGGAGTACGAAGAAGCCTTAACGCACACAGNATGCCCTTAAATGCATTCTCAAAC] [+] EMBL AL693329 [CCAGGNTTANGCTGGTGTGTGTGAGTGTCGATACAGAAGTAGTGTANATGTCCCATTGTCGGGAAGCTGGGAGCGTTTNTTTTTTGTCATCTTCATCTGTAAATACCGGCCAATTCCCCTAGTGCAGGCTAGTTTATGTAAGAACTCCTTATTTATTGGGCATAATAAGTACGCTCAAAAAGCTTCCCATNTTCACCTCAGTTTCCACCCATCCCATCATACANCCAGCTCATATCTGTAGCTATTGTCTTCCAACACGATGTGTGCCTAGAGAAAAACGAGTTCGAGTTACAANCAAAAGAAGACTTAGTCGAAGCGAAGATGATCTGTGTTTGAGGATCAACAACGACANCAAGCACGGGTGTGTTGTGAGTGGAAACGAAATTTCCAGTGACCGTTCGGAGTATCGCTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTATTACGGAATCCCTTACCCCCCCTACTCGAAGGACTACTGATTCTCCCTTGCAACTAGACACATATTCTTCCGCGCGGCAAACGAATTTTGCTTCCAACTGGCCCGGGCAAACCAACCTTTCCTAAGCAGGGGGTNTTCNTCTCTCGTCTATNGACGAAAGCTTCCTCTGNCCAACATAAGGTACGAACCCAACACATGCAACGATACTTCAGCACACGAAATTAGTTTAAGATTTGTTCGCGTACAGAACGTTAAGTTGGAGTACGAAGAAGCCTTAACGCACACAGNATGCCCTTAAATGCATTCTCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6746#0 CTCCACCCGTTTACCCCCGCTCATCCCCGTTCCGGTAACACGGTAACACCGAAATGCCAA 60 consensus_6746#1 ------------------------------------------------------------ consensus_6746#0 CAGAAAGTGCCTCCAAAATCGCCGTTATTAGGCCGCATAGACGAATTAATTAATTTAGCA 120 consensus_6746#1 ------------------------------------------------------------ consensus_6746#0 CGTAAGCCATAGCCAAACGCGCTGGTGTGTGTGAGTGTGGATTAGAGAAGTAGTGTAG-T 179 consensus_6746#1 ------CCAGGNTTA----NGCTGGTGTGTGTGAGTGTCGAT-ACAGAAGTAGTGTANAT 49 *** * ****************** *** * ************ * consensus_6746#0 GTCCCATTGTCGGGAAGCTGGGAGG---TTTTTTTTGTCATCTTCATCTGTAAATACCGG 236 consensus_6746#1 GTCCCATTGTCGGGAAGCTGGGAGCGTTTNTTTTTTGTCATCTTCATCTGTAAATACCGG 109 ************************ * ****************************** consensus_6746#0 CCAATTCCCCTAGTGCAGGCTAGTTTA-GTAAGAACTCCTTTTTTAT-GGGCATAATAAG 294 consensus_6746#1 CCAATTCCCCTAGTGCAGGCTAGTTTATGTAAGAACTCCTTATTTATTGGGCATAATAAG 169 *************************** ************* ***** ************ consensus_6746#0 TACGCTCAAAAAGCTTCCCATTTTCACCTCA-TTTCCACCCATCCCATCATACACCCAG- 352 consensus_6746#1 TACGCTCAAAAAGCTTCCCATNTTCACCTCAGTTTCCACCCATCCCATCATACANCCAGC 229 ********************* ********* ********************** **** consensus_6746#0 TCATATCTGTAG-TATTGTCTTCCAACACG-TGTGTGCCTAGAGAAAAACGAGTTCGAGT 410 consensus_6746#1 TCATATCTGTAGCTATTGTCTTCCAACACGATGTGTGCCTAGAGAAAAACGAGTTCGAGT 289 ************ ***************** ***************************** consensus_6746#0 TACAAACAAAAAAG--CTTAG-CGAAGCGAAGATGATCTGTTTTT-AGGATCAACAACGA 466 consensus_6746#1 TACAANCAAAAGAAGACTTAGTCGAAGCGAAGATGATCTGTGTTTGAGGATCAACAACGA 349 ***** ***** * ***** ******************* *** ************** consensus_6746#0 AAC--AACA-GGGTGTGT-GTGAGTGGAAACGAAATTTCCAGTGA--GTT--GGATATCG 518 consensus_6746#1 CANCAAGCACGGGTGTGTTGTGAGTGGAAACGAAATTTCCAGTGACCGTTCGGAGTATCG 409 * * ** ******** ************************** *** * ***** consensus_6746#0 -TGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTTT--CGGAATCCCTTCCCCC 575 consensus_6746#1 CTGTCTTCGTGCTAATCGCGTATGCTGAATAAGACTGACTATTACGGAATCCCTTACCCC 469 *************************************** * *********** **** consensus_6746#0 CCTACCTCGAAGGACT-CTGATTCTCCCTTGCACCTAGACACATATCCTTCCGCGCGGCA 634 consensus_6746#1 CCCTACTCGAAGGACTACTGATTCTCCCTTGCAACTAGACACATATTCTTCCGCGCGGCA 529 ** *********** **************** ************ ************* consensus_6746#0 AACGAATTT-GCTTCCAACTGGCC--GCCA--CCA--CCTTCCTA--CAGGGTTTTTTTT 685 consensus_6746#1 AACGAATTTTGCTTCCAACTGGCCCGGGCAAACCAACCTTTCCTAAGCAGGGGGTNTTCN 589 ********* ************** * ** *** * ****** ***** * ** consensus_6746#0 TGTTT------TTGACGAATGCTTCCTTGCAAAATAGTAGAACAAAATGAACGATATTAG 739 consensus_6746#1 TCTCTCGTCTATNGACGAAAGCTTCCT-------CTGNCCAACATAAGGTACGA-ACCCA 641 * * * * ****** ******* * **** ** * **** * consensus_6746#0 AAAGAATTAGTTAGATTGTAGCGTACGAGCGTAAGTTGTGTCGAGAAGCTTAGCAAAGAT 799 consensus_6746#1 ACACATGCAACGATACTTCAGCACACGAAATTAGTTT--------AAGATTTGT-----T 688 * * * * * * * *** **** ** ** *** ** * * consensus_6746#0 GCCTTAATGCATTTTAAATGAGATTGTTAAGATGAGATGATACAAAAACGAGGTCAAAAT 859 consensus_6746#1 CGCGTACAGAACGTTAAGTTGGAGTACGAAGAAGCCTTAACGCACACAGNATGCC----- 743 * ** * * **** * ** * **** * * * ** * * * * * consensus_6746#0 TTTTGAAGCATTTATAGCGAGTTTATACGAGTTGAAACACTTTTCTCTTGTTGGCTATAA 919 consensus_6746#1 CTTAAATGCATTCTCAAAC----------------------------------------- 762 ** * ***** * consensus_6746#0 AACGGGAAAGTAGTTTTGTTGTAAGGCCAACTTCTACTTGCTGTTTTTAGTTTTGTAGGT 979 consensus_6746#1 ------------------------------------------------------------ consensus_6746#0 AATGCACGGCAAAATCCTGTGTTTGTGAGTCCTCTCTCTGTACATAGTGTAAGTAACCGA 1039 consensus_6746#1 ------------------------------------------------------------ consensus_6746#0 ATAGTGGAGGAATGATGAAGAACACAGTTTGCCGTTCAATAAACAACG 1087 consensus_6746#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||