These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1194 fasta sequence [CCGCCCACGCGTCCGTGAAAACAGAACAGAATAGTAGAAATGTGACACAACACAGCAAGTAACACACGAAGTAAATGGAGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAACCGCGTGGTGGAAGTGGTAGATTTTTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAATTGTGGTTTTAGTTTTTAGTCGATGCGAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAGAGTGGAGTAAAGGGGACGAGTATGCTGTAG-ACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGAGCTATTGTTAAGGGTTTGCATTATCATTATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGTTGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTGCGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCAAAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAA] [+] EMBL BM651364 [CCGCCCACGCGTCCGTGAAAACAGAACAGAATAGTAGAAATGTGACACAACACAGCAAGTAACACACGAAGTAAATGGAGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAACCGCGTGGTGGAAGTGGTAGATTTTTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAATTGTGGTTTTAGTTTTTAGTCGATGCGAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAG ] [+] EMBL BM605317 [ ccgcaaaATGGAGATGTGCATTGCTTCCTACTCGACACAGACACACAGACACACGCAC T TACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATGCCGAAAGCGGCGACAAGTGGTGTAGCCCAACGGGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAACCGCGTGGTGGAAGTGGTAGAATTTTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAATTGTGGTTTTAGTTTATAGTCGATGCAAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGGAGGAGTTTAGAGTGGAGTAAAGGGGACGAATATGCCGTAG ACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAATGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTGAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGA ] [+] EMBL BX618083 [ ATGTCACTACTAATTGTGGTTTTAGTTTTTAGTCGATGCGAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAATAGTGGAGTAAAGGGGACGAGTATGCTGTAG ACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGAGCTATTGTTAAGGGTTTGCATTATCATTATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGTTGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTGCGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCAAAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAA] [-] EMBL BX626175 [ TAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAGAGTGGAGTAAAGGGGACGAGTATGCTGTAGNACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGANACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGAGCCNTTGTTAAGGGTTTGCATTATCATTATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGTTGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTGCGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCAAAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAA ] consensusID : consensus_6764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGAAGCAATTTATTCAAACAATATAGAAGAAGAAAGAAACACAACCAAAAATACACACTCATTAAATGCAAAATAGAATACACAAGATAGAGAAAAAAAAACAGCGCAATCGTACACTCTTCTATAGCGGATATGTGAGATATGTGGAGAAACAAAAAAGTAGATAACCGATTTCAAACAAGAAAAAGGAATGCAAGGGATGGGTACTGCAGAGAGAGGAAGCTAAAGCAGAAGAACATTGGAAGATCTAGTAGATCATATCAGATACACAGCAAGGAAAAGCTATAGATATAGGCACTGTCTCTTCTAGAAGTAGAGCAAAGAATGCGTCAAATGATAGTGAAATCCGCATTATTGGATGTGATTTGATTGGTTTGGAATGGATCGAAGAGGAAAGTCGTTCAAAGCGAATGTAAACGAAAATGACAATCTATATAAACGTTATAACAAGAGAGAAACAAACACTATTAAGACGAAGTGAGCAATGTGGTAGAGATGAAAACAGAACAGAATAGTAGAAATGTGACTCAACACAGCAAGTAACACACGAAGTAAATGGCGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACACATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCT] [+] EMBL BM578482 [CCGAAGCAATTTATTCAAACAATATAGAAGAAGAAAGAAACACAACCAAAAATACACACTCATTAAATGCAAAATAGAATACACAAGATAGAGAAAAAAAAACAGCGCAATCGTACACTCTTCTATAGCGGATATGTGAGATATGTGGAGAAACAAAAAAGTAGATAACCGATTTCAAACAAGAAAAAGGAATGCAAGGGATGGGTACTGCAGAGAGAGGAAGCTAAAGCAGAAGAACATTGGAAGATCTAGTAGATCATATCAGATACACAGCAAGGAAAAGCTATAGATATAGGCACTGTCTCTTCTAGAAGTAGAGCAAAGAATGCGTCAAATGATAGTGAAATCCGCATTATTGGATGTGATTTGATTGGTTTGGAATGGATCGAAGAGGAAAGTCGTTCAAAGCGAATGTAAACGAAAATGACAATCTATATAAACGTTATAACAAGAGAGAAACAAACACTATTAAGACGAAGTGAGCAATGTGGTAGAGATGAAAACAGAACAGAATAGTAGAAATGTGACTCAACACAGCAAGTAACACACGAAGTAAATGGCGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACACATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCT] consensusID : consensus_6764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [GGCAGAATCGGCACGATGTNAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAAGCCGCGTGGTGGAAGTGGTANGATNTGGNACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAACTTGTGGTNTTGAGNCTGNNCANAGTCGGATGCGAATGCCCTTGTTA] [+] EMBL BX468103 [GGCAGAATCGGCACGATGTNAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAAGCCGCGTGGTGGAAGTGGTANGATNTGGNACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAACTTGTGGTNTTGAGNCTGNNCANAGTCGGATGCGAATGCCCTTGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6764#0 CCGCCCACGCGTCCGTGAAAACAGAACAGAATAGTAGAAATGTGACACAACACAGCAAGT 60 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 AACACACGAAGTAAATGGAGTAAACG-AATAGTAGAAATCACACAAACACAAACATACAA 119 consensus_6764#2 -------------GGCAGAATCGGCACGATGTNAGAAATCACACAAACACAAACATACAA 47 consensus_6764#1 -----CCGAAGCAATTTATTCAAACAATATAGAAGAAG--AAAGAAACACAACCA-AAAA 52 * ** **** * * ******** ** * ** consensus_6764#0 AACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTA 179 consensus_6764#2 AACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTA 107 consensus_6764#1 TACACACTCATTAAATGCAAAATAGAATACACAAGATAGAGAAAAAAAAACAGCGCAATC 112 *** ****** * * * * * * ** *** * * * * * * consensus_6764#0 CCACA-TCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTG 238 consensus_6764#2 CCACA-TCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTG 166 consensus_6764#1 GTACACTCTTCTATAGCGGATAT---GTGAGATATGTGGAGAAACAAAAAAGTAGATAAC 169 *** ** **** * ** ** ** * * * * * * * * ** consensus_6764#0 CATTGCTTCCTACTCGACACAGACACACACAC-ACACACAC-ATACACATACTCTTTCCA 296 consensus_6764#2 CATTGCTTCCTACTCGACACAGACACACACAC-ACACACAC-ATACACATACTCTTTCCA 224 consensus_6764#1 CG--ATTTCAAACAAGAAAAAGGAATGCAAGGGATGGGTACTGCAGAGAGAGGAAGCTAA 227 * *** ** ** * ** * ** * ** * * * * * consensus_6764#0 CTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGG 356 consensus_6764#2 CTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGG 284 consensus_6764#1 AGCAGAAGAACAT-TGGAAGATCTAGTAGATCATATCAGATACACAGCAAGGAAAAGCTA 286 * * * * * * * ** ** * * * * * * * ***** consensus_6764#0 CGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCG 416 consensus_6764#2 CGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCG 344 consensus_6764#1 TAGATATAGGCACTGTCTCTTCTAGAAGTAGAGCAAAGAATGCGTCAA-ATGATAGTG-- 343 * * ** * * * * ** ** ** * *** *** consensus_6764#0 CCAGTAGTGAGCAGGATTAG-TGAGAGCCAACAA-CCGCGTGGTGGAAGTGGTAG-ATTT 473 consensus_6764#2 CCAGTAGTGAGCAGGATTAG-TGAGAGCCAACAAGCCGCGTGGTGGAAGTGGTANGATNT 403 consensus_6764#1 ----AAATCCGCATTATTGGATGTGATTTGATTG---GTTTGGAATGGATCGAAG-AGGA 395 * * *** *** * ** ** * * *** * * * * consensus_6764#0 TTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCG 533 consensus_6764#2 GGNACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCG 463 consensus_6764#1 AAGTCGTTCAAAGCGAATGTAAACGAAAATGACAATCTA-TATAAACGTTATAACAAGAG 454 * *** ** * * ** * * * * * ** * * **** * * *** * consensus_6764#0 GATGTCAATGTCACTACTAA-TTGTGGTTTTA-----GTTTTTAGTCG-ATGCGAATGCC 586 consensus_6764#2 GATGTCAATGTCACTACTAACTTGTGGTNTTGAGNCTGNNCANAGTCGGATGCGAATGCC 523 consensus_6764#1 AGAAACAAA--CACTATTAAGACGAAGTGAGCAATGTGGTAGAGATGAAAACAGAACAGA 512 *** ***** *** * ** * * * *** consensus_6764#0 CTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTT 646 consensus_6764#2 CTTGTTA----------------------------------------------------- 530 consensus_6764#1 ATAGTAGAAATGTGACTCAACACAGCAAGTAACACACGAAGTAAATGGCGTAAACGAAT- 571 * ** consensus_6764#0 AAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAGAGTGGAGTAAAGGGGACGAGTATGC 706 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 -AGTAGAAATCACACAAACACAAACATACAAAACAGACACATCACACGGGGCAAGTATCA 630 consensus_6764#0 TGTAGACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGC 766 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 TGCACGATCGGTGTTAGGCACCGGTATTCT------------------------------ 660 consensus_6764#0 ATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAAC 826 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 CATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGT 886 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 GAGCAAGCATTCACTAGAATCTATGTACTATGAGCTATTGTTAAGGGTTTGCATTATCAT 946 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 TATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGT 1006 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 TGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTG 1066 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 CGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCA 1126 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 AAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGA 1186 consensus_6764#2 ------------------------------------------------------------ consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 GAGAAAAA 1194 consensus_6764#2 -------- consensus_6764#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||