These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1569 fasta sequence [CCGGGAAGCCTCGGGCATGGTTCCAGCATTTACCGGCATTTAAAAGCTAATTCAAACAGTAACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCATGATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCACATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTTTGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAGATCTGAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAGAAATGGCACTGGTGTGCACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCATCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTGCCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGAAACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGATACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATTGCATAGAATCGTTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAG-AAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCACGTTGGCCGAA-GGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCG-TAATTGTGCGCTGTTTGAAAAGCATCGTGAAGA-CTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGA-CAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGAAGTGAAAACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACCGAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGGTGAAAACAGGATTACCGCCTTCATGCATCCCAGCTCGCTTAGGTCGGGCGAAATCTGGCGAAAGCGGCAGAGAATCTCCTGCAT] [+] EMBL BM637758 [CCGGGAAGCCTCGGGCATGGTTCCAGCATTTACCGGCATTTAAAAGCTAATTCAAACAGTAACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCATGATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCACATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTTTGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAGATCTGAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAGAAATGGCACTGGTGTGCACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCATCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTGCCTGCCG ] [+] EMBL CNS09OSJ [ CGGCATTTAAAAGCTAATTCAAACAGTAACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCATGATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCACATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTTTGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAGATCTCAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAAAAATGGCACTGGTGTGCACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCATCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTGCCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGAAACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGATACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATTGCATAGAATCGTTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAG AAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTT ] [+] EMBL CNS08ZV5 [ TGATTGGAATGCGAACGGACCTCGCTGCCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGAAACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGATACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATTGCATAGAATCGTTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAGCAAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCACGTTGGCCGAA GGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCG TAATTGTGCGCTGTTTGAAAAGCATCGTGAAGA CTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGA CAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGA ] [-] EMBL CNS09OSK [ CATGAGCTTCCAGGGAGTGAGAGAG AAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCACGTTGGCCGAAGGGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCG TAATTGTGCGCTGTTTGAAAAGCATCGTGAAGA CTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGAGCAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGAAGTGAAAACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACCGAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGG ] [-] EMBL CNS08ZV6 [ TGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCGCTAATTGTGCGCTGTTTGAAAAGCATCGTGAAGAGCTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGAGCAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACATCTCCAACAACTGCACCAGGAAGTGAAAACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACCGAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGGTGAAAACAGGATTACCGCCTTCATGCATCCCAGCTCGCTTAGGTCGGGCGAAATCTGGCGAAAGCGGCAGAGAATCTCCTGCAT] consensusID : consensus_6767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [GCCCCCGAGGTTCAGTATGGAATCAACAGATAACGACGTGCTTTGTGCTGATAGGATACTGTTCACTCACGGTACAACATGAACTCCTTTCTCGAATTGGCATAGGAAAATCCGGTTTTTTAAGGAAGGTACCACATGAGCTTCCAGAGTGAGAGAGAAATGTCCAAAGTGTGACGTCTGCACTTCCCGTGGAGTTGGAAGCTGGCAAGAGAGTTGTTAAAGCTGAGAAAGAAGATAGCCCTCCTCTCCACATCATTGGCTCATCGCTGGGAGCACGATAAAA] [+] EMBL AL693117 [GCCCCCGAGGTTCAGTATGGAATCAACAGATAACGACGTGCTTTGTGCTGATAGGATACTGTTCACTCACGGTACAACATGAACTCCTTTCTCGAATTGGCATAGGAAAATCCGGTTTTTTAAGGAAGGTACCACATGAGCTTCCAGAGTGAGAGAGAAATGTCCAAAGTGTGACGTCTGCACTTCCCGTGGAGTTGGAAGCTGGCAAGAGAGTTGTTAAAGCTGAGAAAGAAGATAGCCCTCCTCTCCACATCATTGGCTCATCGCTGGGAGCACGATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6767#0 CCGGGAAGCCTCGGGCATGGTTCCAGCATTTACCGGCATTTAAAAGCTAATTCAAACAGT 60 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 AACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCAT 120 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 GATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCA 180 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTT 240 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 TGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAG 300 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 ATCTGAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAGAAATGGCACTGGTGTG 360 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCA 420 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 TCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTG 480 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGA 540 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 AACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGA 600 consensus_6767#1 --GCCCCCGAGGTTCAGTATGGAATCAAC-AGATAACGACGTGC-TTTGTGCTGATAGGA 56 * ** ** *************** ************** *************** consensus_6767#0 TACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATT--GCATAGAA----TCG- 653 consensus_6767#1 TACTGTTCA-CTCACGGTACAACATGAACTCCTTTCTCGAATTGGCATAGGAAAATCCGG 115 ********* ****************************** * ****** * ** consensus_6767#0 -TTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAGAAAATTGTCCCAAA 712 consensus_6767#1 TTTTTTAAGGAAGGTACC--ACATGAGCTTCCAG--AGTGAGAGAGAAA--TGTCC-AAA 168 ***************** ************** ************* ***** *** consensus_6767#0 GTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGC 772 consensus_6767#1 GTGTGACGT-CTGCACTTCCCG-TGGAGTT--GGAAGCTGGCAA-GAGAGTTGTTAAAGC 223 ********* *** ******** ******* ******** *** ***** ******** consensus_6767#0 AGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAA 832 consensus_6767#1 TGAGAAAGAAGATAGCCCTCCTCTCCACATCATTGG--CTCATCGCTGGGAGCACGATAA 281 *********** *********** ********* * ********************** consensus_6767#0 AAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCG 892 consensus_6767#1 AA---------------------------------------------------------- 283 ** consensus_6767#0 CGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGA 952 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 GCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCAC 1012 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 GTTGGCCGAAGGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATG 1072 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAG 1132 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAAT 1192 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 TGGTGCCGTAATTGTGCGCTGTTTGAAAAGCATCGTGAAGACTTTTTTGGTAAGATTAGC 1252 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CTGGATGGTTATTCGGCGGACAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGG 1312 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 AATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGAAGTGAAA 1372 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 ACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACC 1432 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 GAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGGTGAAAAC 1492 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 AGGATTACCGCCTTCATGCATCCCAGCTCGCTTAGGTCGGGCGAAATCTGGCGAAAGCGG 1552 consensus_6767#1 ------------------------------------------------------------ consensus_6767#0 CAGAGAATCTCCTGCAT 1569 consensus_6767#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||