These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [CAGAATGCCCCAGGTTTGAAAACAGGGTGCAACGATGGGCTGCTCGAACCTTCATNCACACTGCCAGATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCTGAAGATTAAGTGATGATATGTATGCTGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCTGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCTGGACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCTGCAGATCAACAGTCCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCCATTGGCGCTGCACGGTGCACCGACGGCGGAGCTGGCGAATGGTGCCTGCGGCTGACCAGCCACTGGACCCTGCATGCAATCTACTACCCTGCCCTGCTTCGTATCCGCCACGGTGCTGCAAGTTCATGGTGGGCTTCGCAGTTGCTATGCCAGGCGCAGCGTGATCTGACGNGCTGACACAGGCCGCCGACAGGCTTCGCTGGACTCTCCGGCAAACGACNNCTACAGTGCAGCAGCTGTGAAGCGGCAGGGGCTATCGCAGCGACGCTGAGCTATCTAACGTCGTGCCACGGTCATACTCGAGCCACTATNGNGCGACAGACAGAAGCCGCTATAGATTAAAGGGTATACACGTAGCAACAGANAGTAANCGAACTCGNGGTTGTACATAT] [+] EMBL AL694089 [CAGAATGCCCCAGGTTTGAAAACAGGGTGCAACGATGGGCTGCTCGAACCTTCATNCACACTGCCAGATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCTGAAGATTAAGTGATGATATGTATGCTGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCTGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCTGGACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCTGCAGATCAACAGTCCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCCATTGGCGCTGCACGGTGCACCGACGGCGGAGCTGGCGAATGGTGCCTGCGGCTGACCAGCCACTGGACCCTGCATGCAATCTACTACCCTGCCCTGCTTCGTATCCGCCACGGTGCTGCAAGTTCATGGTGGGCTTCGCAGTTGCTATGCCAGGCGCAGCGTGATCTGACGNGCTGACACAGGCCGCCGACAGGCTTCGCTGGACTCTCCGGCAAACGACNNCTACAGTGCAGCAGCTGTGAAGCGGCAGGGGCTATCGCAGCGACGCTGAGCTATCTAACGTCGTGCCACGGTCATACTCGAGCCACTATNGNGCGACAGACAGAAGCCGCTATAGATTAAAGGGTATACACGTAGCAACAGANAGTAANCGAACTCGNGGTTGTACATAT] consensusID : consensus_6776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 727 fasta sequence [GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCGAAGATTAAGGATGATATGTTGCGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCGGACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCGCAGATCAACAGTCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCATGGGCTGGCACGGTGCACCGAC-GGCGGGGCTGGCGAATGGTGCCGCGGCTGACCAGCACTGGACCCTGCATGCAATCTACTACCCGCCCCTGCTTCGTTCCGCCACGGTGCGCAAGTTCATGGTGGGCTTCGAGTTGCTATGCCAGGCGCAGCGTGATCTGACGGCTGAACAGGCCGCCGACAGGCTTCGTGGACTCTCCGGCAAACGACACTACAGTGAGCAGCTGTGAAGCGGAGGGGCTATCGAGGAGTGAGCTATCTAATCGTGCCACGGTCATATCGAGCATATTGGGACAGACAGAGCGCTTAGATAAGGGTTTAGTGCAGCGGGTTTCGGTGGGTGTACATTCCAGTGTACGTGAATAAAGTACCTTATCCGATGTTATAAGTATCAAAAA] [-] EMBL CNS08VA0 [GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCGAAGATTAAGGATGATATGTTGCGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCGGACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCGCAGATCAACAGTCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCATGGGCTGGCACGGTGCACCGAC GGCGGGGCTGGCGAATGGTGCCGCGGCTGACCAGCACTGGACCCTGCATGCAATCTACTACCCGCCCCTGCTTCGTTCTGCCACGGTGCGCAAGTTCATGGTGGGCTTCGAGTTGCTATGCCAGGCGCAGCGTGATCTGACGGCTGAACAGGCCGCCGACAGGCTTCGTGGACTCTCCGGCAAACGACACTACAGTGAGCAGCTGTGAAGCGGAGGGGCTATCGAGGAGTGAGCTATCTAATCGTGCCACGGTCATATCGAGCATATTGGGACAGACAGAGCGCTTAGATAAGGGTTTAGTGCAGCGGGTTTCGGTGGGTGTACATTCCAGTGTACGTGAATAAAGTACCTTATCCGATGTTATAAGTATCAAAAA] [-] EMBL CNS09PTZ [GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCGAAGATTAAGGATGATATGTTGCGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCGAACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCGCAGATCAACAGTCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCATGGGCTGGCACGGTGCACCGACGGGCGGGGCTGGCGAATGGTGCCGCGGCTGACCAGCACTGGACCCTGCATGCAATCTACTACCCGCCCCTGCTTCGTTCCGCCACGGTGCGCAAGTTCATGGTGGGCTTCGAGTTGCTATGCCAGGCGCAGCGTGATCTGACGGCTGAACAGGCCGCCGACAGGCTTCGTGGACTCTCCGGCAAACGACACTACAGTGAGCAGCTGTGAAGCGGAGGGGCTATCGAGGAGTGAGCTATCTAATCGTGCCACGGTCATATCGAGCATATTGGGACAGACAGAGCGCTTAGATAAGGGTTTAGTGCAGCGGGTTTCGGTGGGTGTACATTCCAGTGTACGTGAATAAAGTACCTTATCCGATGTTTTA ] [-] EMBL CNS09BHZ [GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCGAAGATTAAGGATGATATGTTGCGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCGGACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGTTTTCGCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCGCAGATCAACAGTCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCATGGGCTGGCACGGTGCATCGAC GGCGGGGCTGGCGAATGGTGCCGCGGCTGACCAGCACTGGACCCTGCATGCAATCTACTACCCGCCCCTGCTTCGTTCCGCCACGGTGCGCAAGTTCATGGTGGGCTTCGAGTTGCTATGCCAGGCGCAGCGTGTTCTGACGGCTGAACAGGCCGCCGACAGGCTTCGTGGACTCTCCGGCAAACGACACTACAGTGAGCAGCTGTGAAGCGGAGGGGCTATCGAGGAGTGAGCTATCTAATCGTGCCACGGTCATATCGAGCATATTGGGACAGACAGAGCGCTTAGATAAGGGTTTAGTGCAGCGGGTTTCGGTGGGTGTACATTCCAGTGTACGTGAATAAAta ] [-] EMBL CNS08DR6 [GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCGAAGATTAAGGATGATATGTTGCGGCAGTACTACGCAGCTCATGGAACGGCTCTATTTTTTTATTACGTGAACCGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCGGACTGGCTGGTGGTGGTTCCGTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCGAAATCGGAACAAGCGCATCACCGACCTAACTTTGCCGCAGATCAACAGTCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCATGGGCTGGCACGGTGCACCGAC GGCGGAGCTGGCGAATGGTGCCGCGGCTGACCAGCACTGGACCCTGCATGCAATCTACTACCCGCCCCTGCTTCGTTCCGCCACGGTGCGCAAGTTCATGGTGGGCTTCGAGTTGCTATGCCAGGCGCAGCGTGATCTGACGGCTGAACAGGCCGCCGACAGGCTTCGTGGACTCTCCGGCAAACGACACTACAGTGAGCAGCTGTGAAGCGGAGGGGCTATCGAGGAGTGAGCTATCTAATCGTGCCACGGTCATATCGAGCATATTGGGACAGACAGAGCGCTTAGATAAGGGTTTAGTGCAGCGGGTTTCGGTGGGTGTACATTCCAGTGTACGTGAATAAAG ] [-] EMBL CNS097JJ [GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCGAAGATTAAGGATGATTTGTTGCGGCAGTACTACGCGGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCGCGAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCGAACTGGCTGGTGGTGGTTCCGTTTTGGGCAGTGTGGCCGTTCGAAACGATGCTGTTTTCGCGAAATCGGAAAAAGCGCATCACCGACCTAACTTTGCCGCAGTTCAACATTCTAGCGATCGTGATCAAGGAGCTGACCACCAAGTACGAAAATCTCTTAAAGTGCTCGTTTCCGTACAGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6776#0 CAGAATGCCCCAGGTTTGAAAACAGGGTGCAACGATGGGCTGCTCGAACCTTCATNCACA 60 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 CTGCCAGATCTGGGCCTGCTCGTTTCTGCCGAATGAGCCTGAAGATTAAGTGATGATATG 120 consensus_6776#1 ------GATCTGGGCCTGCTCGTTTCTGCCGAATGAGCC-GAAGATTAAG-GATGATATG 52 ********************************* ********** ********* consensus_6776#0 TATGCTGGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACCTGC 180 consensus_6776#1 T-TGC-GGCAGTACTACGCAGCTCATGGAACGGCTCTACTGGATGATTACGTGAACC-GC 109 * *** *************************************************** ** consensus_6776#0 GAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCCTGGACTGGCTGGTGGTGGTTCC 240 consensus_6776#1 GAATTGATTAAGAGGGAGCGAATTGTCATCGAGAATCC-GGACTGGCTGGTGGTGGTTCC 168 ************************************** ********************* consensus_6776#0 GTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGCCGAAATCGGAACAAGCGCA 300 consensus_6776#1 GTTCTGGGCAGTGTGGCCGTTCGAAACGATGCTGATTTCGC-GAAATCGGAACAAGCGCA 227 ***************************************** ****************** consensus_6776#0 TCACCGACCTAACTTTGCCTGCAGATCAACAGTCCTAGCGATCGTGATCAAGGAGCTGAC 360 consensus_6776#1 TCACCGACCTAACTTTGCC-GCAGATCAACAGTC-TAGCGATCGTGATCAAGGAGCTGAC 285 ******************* ************** ************************* consensus_6776#0 CACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGCCATTGGCGCTGCACGGT 420 consensus_6776#1 CACCAAGTACGACAATCTCTTCAAGTGCTCGTTTCCGTACAGC-ATGGGC-TGGCACGGT 343 ******************************************* ** *** ******* consensus_6776#0 GCACCGACGGCGGAGCTGGCGAATGGTGCCTGCGGCTGACCAGCCACTGGACCCTGCATG 480 consensus_6776#1 GCACCGACGGCGGGGCTGGCGAATGGTGCC-GCGGCTGACCAGC-ACTGGACCCTGCATG 401 ************* **************** ************* *************** consensus_6776#0 CAATCTACTACCCTGCCCTGCTTCGTATCCGCCACGGTGCTGCAAGTTCATGGTGGGCTT 540 consensus_6776#1 CAATCTACTACCCGCCCCTGCTTCGT-TCCGCCACGGTGC-GCAAGTTCATGGTGGGCTT 459 ************* *********** ************* ******************* consensus_6776#0 CGCAGTTGCTATGCCAGGCGCAGCGTGATCTGACGNGCTGACACAGGCCGCCGACAGGCT 600 consensus_6776#1 CG-AGTTGCTATGCCAGGCGCAGCGTGATCTGACGG-CTGA-ACAGGCCGCCGACAGGCT 516 ** ******************************** **** ****************** consensus_6776#0 TCGCTGGACTCTCCGGCAAACGACNNCTACAGTGCAGCAGCTGTGAAGCGGCAGGGGCTA 660 consensus_6776#1 TCG-TGGACTCTCCGGCAAACGACAC-TACAGTG-AGCAGCTGTGAAGCGG-AGGGGCTA 572 *** ******************** ******* **************** ******** consensus_6776#0 TCGCAGCGACGCTGAGCTATCTAACGTCGTGCCACGGTCATACTCGAGCCACTATNGNGC 720 consensus_6776#1 TCGAGGAG----TGAGCTATCTAA--TCGTGCCACGGTCATA-TCGAGC----ATATTGG 621 *** * * ************ **************** ****** ** * consensus_6776#0 GACAGACAGAAGCCGCTATAGATTAAAGGGTATACACGTAGCAACAGANAGTAANCGAAC 780 consensus_6776#1 GACAGACAGAG--CGCT-TAGAT--AAGGGTTTA-GTGCAGCGGGTTTCGGTGGGTGTAC 675 ********** **** ***** ****** ** * *** ** * ** consensus_6776#0 TCGNGGTTGTACATAT------------------------------------ 796 consensus_6776#1 ATTCCAGTGTACGTGAATAAAGTACCTTATCCGATGTTATAAGTATCAAAAA 727 ***** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||