These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1340 fasta sequence [CGGGTGCGCAGAATTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAG-ATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAACAATTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAA-GGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGC-AAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACG-AAGCGCACATGCGTG-CAAACACGGCTTCGGTGAACCATTTGAATGTACCATATGCNACATTTAAATTTCGCCCATAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGATTACGAGCGCATAGCATAGTGCACTCGCGACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAAACTACGCTATGAGTCCCATAGCACTCTGTATGTAAATGATACACGCGATTCTTTCACGTGAGTTGATGTATAAACTTTGCTTTGTAATTCCCCCC] [+] EMBL CNS08Q76 [CGGGTGCGCAGAATTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAG ATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAACAATTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAA GGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTG GGCAAAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCC ] [+] EMBL CNS08XN5 [ gTTTTGTGTGTCGATTGT ACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAGCATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAAGACTTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAA GGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTTAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCTGCTGTGCGGC AAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCAC ] [+] EMBL AL694115 [ ccgaggttAGATGCTGAA TATTTGCCGAGGACATGAAAACAGAATGGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGC AAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGGCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACG AAGCGCACATGCGTG CAAACACGGCTTCGGTGAACCATTTGAATGTACCATATGCNACATTTAAATTTCGCCCATAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCG ] [-] EMBL CNS08Q77 [ CCGTCCCCCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACGAAAGCG ACATGCGTGCCAAAAACGGCTTCGGTGAACCATTTGAATGTACCATATGCAACA TTAAATTTCG CCATAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGATTACGAGCGCATAGCATAGTGCACTCGCGACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAAACTACGCTATGAGTCCCATAGCACTCTGTATGTAAATGATACACGCGATTCTTTCACGTGAGTTGATGTATAAACTTTGCTTTGTAATTCCCCCC] [-] EMBL CNS08XN6 [ AGGATTACGAGCGCATAGCATAGTGAACTCG GACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTAAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAAACTACGCTATGAGTCCCATAGAACTCTGTATGTAAATAATAAACGCGATTTTTTCACGTGAGTTGATGTA ] consensusID : consensus_6778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [GGCAAGAATCGGCACGNTGGATCGCCATAGATGATGAGGATCTGGGCCTTGAAGCAGGTACTTTTGAGCGATAAGTTGACGCCTGATCCATTCGAGACAAACAATACCCTGCCATCCACCCACCAAGGCGAGCAGCAACGGAAGCAACGGCGAAGGGTTACAGCATCGCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCATGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCACATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCGATGACGTGCAGCCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAGCTGCGAAATGTGCGACAAAGGCTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATCGAAGCACAACTACGGAGAATCGTATTGAATGTACCATATGCAACATTCNAGATTTCGCCATAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAANCAAGCTGCTCCTGTGAGCAGTTGGTGGCATGAAGTTTCAGGACAAGAGAGGGGCTACGCTNNGCACATGGTAGGGGTACNATTCGGACGAAGAAAGCCTTTGGCCGTGGCAGN] [+] EMBL BX468150 [GGCAAGAATCGGCACGNTGGATCGCCATAGATGATGAGGATCTGGGCCTTGAAGCAGGTACTTTTGAGCGATAAGTTGACGCCTGATCCATTCGAGACAAACAATACCCTGCCATCCACCCACCAAGGCGAGCAGCAACGGAAGCAACGGCGAAGGGTTACAGCATCGCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCATGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCACATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCGATGACGTGCAGCCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAGCTGCGAAATGTGCGACAAAGGCTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATCGAAGCACAACTACGGAGAATCGTATTGAATGTACCATATGCAACATTCNAGATTTCGCCATAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAANCAAGCTGCTCCTGTGAGCAGTTGGTGGCATGAAGTTTCAGGACAAGAGAGGGGCTACGCTNNGCACATGGTAGGGGTACNATTCGGACGAAGAAAGCCTTTGGCCGTGGCAGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6778#0 CGGGTGCGCAGAATTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTT 60 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 AAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAA 120 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 GATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAAC 180 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 GGTGCGGCGCGCGAAACTGACCAGTGTAACAATTCGGCGAATGAGTTCGATGAGGCAACA 240 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 TTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAA 300 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 TACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTC 360 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 GATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAAGGG 420 consensus_6778#1 GGCAAGAATCGGCACGNTGGAT-CGCCATAGA---TGATGAGGATCTGGGCCTTGAAGCA 56 * ** * * ** * ** *** ** ***** ** **** consensus_6778#0 AGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCG-TACC 479 consensus_6778#1 GGT--ACTTTTGAGCGATAA----GTTGACGCC--TGATCCATTCGAGACAAACAATACC 108 * * * ** *** * *** * * ****** **** * * **** consensus_6778#0 GTACGAACCGTACGA-ACGGCAGCCAACAACGCCAAACGAAACTTCCGCAC--CAGCGAT 536 consensus_6778#1 CTGCCATCCACCCACCAAGGCGAGCAGCAACGG-AAGCAACGGCGAAGGGTTACAGCATC 167 * * * ** * * *** ** ***** ** * * * **** consensus_6778#0 ACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAA 596 consensus_6778#1 GCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCA 227 ** ** * * * * * * * * * *** **** ** ** ** *** * consensus_6778#0 TCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGCAAATTAATACTCTCGCTAAAAGACCA 656 consensus_6778#1 TGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCA 287 * ** ** ** *********** ****** * * * *** * ****** consensus_6778#0 CATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCCAAGACCTGCGG 716 consensus_6778#1 CATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCGATGACGTGCAG 347 **** ** ** *** *** ** * * **** ** ******* * *** *** * consensus_6778#0 TCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAG 776 consensus_6778#1 CCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAG 407 ** *** * ** ******* ** * ***** *** *** ** ******* consensus_6778#0 CTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACGAAGCGCACATGCGTGC 836 consensus_6778#1 CTGCGAAATGTGCGACAAAGGCTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATC 467 *** ***** **** ********* * ** * ** *** * ** ** ** ***** * consensus_6778#0 AAA-CACGGCTTCGGTGAACCAT-TTGAATGTACCATATGCNACATTTAAATTTCGCCCA 894 consensus_6778#1 GAAGCACAACTACGGAGAATCGTATTGAATGTACCATATGCAACATTCNAGATTTCGCCA 527 ** *** ** *** *** * * ***************** ***** * ** *** consensus_6778#0 TAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAA-CTGTGA-- 951 consensus_6778#1 TAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAANCAAGCTGCTCCT 587 ****************************** ************ *** *** *** consensus_6778#0 GTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGA-TTACG---AGCGCATAGCA 1007 consensus_6778#1 GTGAGCAGTTGGTGGCATGAAGTTTCAGGACAAGAGAGGGGCTACGCTNNGCACATGGTA 647 *** ** * ********** **** ******* *** **** ** *** * * consensus_6778#0 TAG-TGCACTCGCGACGA-GCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAA 1065 consensus_6778#1 GGGGTACNATTCGGACGAAGAAAGCCTTTGGCCGTGGCAGN------------------- 688 * * * * ***** * * * ****** * ** consensus_6778#0 CTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGA 1125 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 TGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATG 1185 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 ACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAA 1245 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 ACTACGCTATGAGTCCCATAGCACTCTGTATGTAAATGATACACGCGATTCTTTCACGTG 1305 consensus_6778#1 ------------------------------------------------------------ consensus_6778#0 AGTTGATGTATAAACTTTGCTTTGTAATTCCCCCC 1340 consensus_6778#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||