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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1340 fasta sequence
[CGGGTGCGCAGAATTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAG-ATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAACAATTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAA-GGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGC-AAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACG-AAGCGCACATGCGTG-CAAACACGGCTTCGGTGAACCATTTGAATGTACCATATGCNACATTTAAATTTCGCCCATAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGATTACGAGCGCATAGCATAGTGCACTCGCGACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAAACTACGCTATGAGTCCCATAGCACTCTGTATGTAAATGATACACGCGATTCTTTCACGTGAGTTGATGTATAAACTTTGCTTTGTAATTCCCCCC]
[+] EMBL CNS08Q76 [CGGGTGCGCAGAATTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAG ATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAACAATTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAA GGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTG GGCAAAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCC ]
[+] EMBL CNS08XN5 [ gTTTTGTGTGTCGATTGT ACAACAAACTACGACACATCAAAGCCTTTAAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAAGCATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAACGGTGCGGCGCGCGAAACTGACCAGTGTAAGACTTCGGCGAATGAGTTCGATGAGGCAACATTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAATACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTCGATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAA GGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTTAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCTGCTGTGCGGC AAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCAC ]
[+] EMBL AL694115 [ ccgaggttAGATGCTGAA TATTTGCCGAGGACATGAAAACAGAATGGGAGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCGTACCGTACGAACCGTACGAACGGCAGCCAACAACGCCAAACGAAACTTCCGCACCAGCGATACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAATCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGC AAATTAATACTCTCGCTAAAAGACCACATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGGCCCAAGACCTGCGGTCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACG AAGCGCACATGCGTG CAAACACGGCTTCGGTGAACCATTTGAATGTACCATATGCNACATTTAAATTTCGCCCATAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCG ]
[-] EMBL CNS08Q77 [ CCGTCCCCCTGAAAAAGATTGTAAAGAGCTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACGAAAGCG ACATGCGTGCCAAAAACGGCTTCGGTGAACCATTTGAATGTACCATATGCAACA TTAAATTTCG CCATAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAACTGTGAGTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGATTACGAGCGCATAGCATAGTGCACTCGCGACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAAACTACGCTATGAGTCCCATAGCACTCTGTATGTAAATGATACACGCGATTCTTTCACGTGAGTTGATGTATAAACTTTGCTTTGTAATTCCCCCC]
[-] EMBL CNS08XN6 [ AGGATTACGAGCGCATAGCATAGTGAACTCG GACGAGCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTAAAAACTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGATGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATGACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAAACTACGCTATGAGTCCCATAGAACTCTGTATGTAAATAATAAACGCGATTTTTTCACGTGAGTTGATGTA ]
consensusID : consensus_6778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[GGCAAGAATCGGCACGNTGGATCGCCATAGATGATGAGGATCTGGGCCTTGAAGCAGGTACTTTTGAGCGATAAGTTGACGCCTGATCCATTCGAGACAAACAATACCCTGCCATCCACCCACCAAGGCGAGCAGCAACGGAAGCAACGGCGAAGGGTTACAGCATCGCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCATGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCACATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCGATGACGTGCAGCCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAGCTGCGAAATGTGCGACAAAGGCTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATCGAAGCACAACTACGGAGAATCGTATTGAATGTACCATATGCAACATTCNAGATTTCGCCATAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAANCAAGCTGCTCCTGTGAGCAGTTGGTGGCATGAAGTTTCAGGACAAGAGAGGGGCTACGCTNNGCACATGGTAGGGGTACNATTCGGACGAAGAAAGCCTTTGGCCGTGGCAGN]
[+] EMBL BX468150 [GGCAAGAATCGGCACGNTGGATCGCCATAGATGATGAGGATCTGGGCCTTGAAGCAGGTACTTTTGAGCGATAAGTTGACGCCTGATCCATTCGAGACAAACAATACCCTGCCATCCACCCACCAAGGCGAGCAGCAACGGAAGCAACGGCGAAGGGTTACAGCATCGCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCATGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCACATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCGATGACGTGCAGCCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAGCTGCGAAATGTGCGACAAAGGCTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATCGAAGCACAACTACGGAGAATCGTATTGAATGTACCATATGCAACATTCNAGATTTCGCCATAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAANCAAGCTGCTCCTGTGAGCAGTTGGTGGCATGAAGTTTCAGGACAAGAGAGGGGCTACGCTNNGCACATGGTAGGGGTACNATTCGGACGAAGAAAGCCTTTGGCCGTGGCAGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6778#0 CGGGTGCGCAGAATTTTGTGTGTCGATTGTAACAACAAACTACGACACATCAAAGCCTTT 60
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 AAGGCCTCCTGCATCAGCAATGATGAGACGTTTAGAAAGTGGTTTACAGTGGCCGATAAA 120
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 GATTGTTCGCGAGACGACACTCATCCACTGAAATTGAATGCTGCAGCGCAAGCATTCAAC 180
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 GGTGCGGCGCGCGAAACTGACCAGTGTAACAATTCGGCGAATGAGTTCGATGAGGCAACA 240
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 TTTTTCGACAACAACATTGTAGTCATCAAGGAAGAAGAAATTGACGACCTGGCGGTCAAA 300
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 TACATCGTTCAAGAAATGTATGAAGAGATGGAAGTACTCACGGAAGATGTTGTTGACTTC 360
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 GATGTTGATGATGATGATGAAGATGCTGAAGAATTTGCCGAGGACATGAAAACAGAAGGG 420
consensus_6778#1 GGCAAGAATCGGCACGNTGGAT-CGCCATAGA---TGATGAGGATCTGGGCCTTGAAGCA 56
* ** * * ** * ** *** ** ***** ** ****
consensus_6778#0 AGCCAAACATCGATAGATGATTTCGTTACCAGCGATGATCCGGGCGAGGCGTCCG-TACC 479
consensus_6778#1 GGT--ACTTTTGAGCGATAA----GTTGACGCC--TGATCCATTCGAGACAAACAATACC 108
* * * ** *** * *** * * ****** **** * * ****
consensus_6778#0 GTACGAACCGTACGA-ACGGCAGCCAACAACGCCAAACGAAACTTCCGCAC--CAGCGAT 536
consensus_6778#1 CTGCCATCCACCCACCAAGGCGAGCAGCAACGG-AAGCAACGGCGAAGGGTTACAGCATC 167
* * * ** * * *** ** ***** ** * * * ****
consensus_6778#0 ACCAGCGGACCATCAAACAGTAACTGCCGCCGCCAGTGAGGAAACGGGCAAGAAGAAGAA 596
consensus_6778#1 GCCCGCTGCCAAAGACAAACACGCCACACGGGACAGCCAGGAGCAGGACAGCAAAAAGCA 227
** ** * * * * * * * * * *** **** ** ** ** *** *
consensus_6778#0 TCCACAAAAGAAAACCCTTTGCCCGCTGTGCGGCAAATTAATACTCTCGCTAAAAGACCA 656
consensus_6778#1 TGTACCGGCCAAGCAGCTGTGCCCGCTGTGTGGCAAACTGGTGCACTCCATGGCAGACCA 287
* ** ** ** *********** ****** * * * *** * ******
consensus_6778#0 CATGTTGAGTCACACGGGGGAGAAAAAATATCGCTGCAAGTACTGCCCCAAGACCTGCGG 716
consensus_6778#1 CATGCTGTCCCATACGAAGGAACCGAAGTTTTCCTGCCAGCACTGCCCGATGACGTGCAG 347
**** ** ** *** *** ** * * **** ** ******* * *** *** *
consensus_6778#0 TCGGAAAGGATCGCTGCGGCTGCACATGCAAGCCGTCCACCTGAAAAAGATTGTAAAGAG 776
consensus_6778#1 CCGCAAATCGTACCTCAAGCTGCACGTGGACGCCGTGCACAAGAAGCGCATCATAAAGAG 407
** *** * ** ******* ** * ***** *** *** ** *******
consensus_6778#0 CTGTGAAATATGCGGCAAAGGCTTTACTTACGTGGAGTCGCACGAAGCGCACATGCGTGC 836
consensus_6778#1 CTGCGAAATGTGCGACAAAGGCTTCAGCTATATCGAATCGTATGAGGCTCATATGCGATC 467
*** ***** **** ********* * ** * ** *** * ** ** ** ***** *
consensus_6778#0 AAA-CACGGCTTCGGTGAACCAT-TTGAATGTACCATATGCNACATTTAAATTTCGCCCA 894
consensus_6778#1 GAAGCACAACTACGGAGAATCGTATTGAATGTACCATATGCAACATTCNAGATTTCGCCA 527
** *** ** *** *** * * ***************** ***** * ** ***
consensus_6778#0 TAAAGGCGGATTGCGGGGTCACAACAATCGTAAGCACAACGATGAAAGCAA-CTGTGA-- 951
consensus_6778#1 TAAAGGCGGATTGCGGGGTCACAACAATCGCAAGCACAACGATCAAANCAAGCTGCTCCT 587
****************************** ************ *** *** ***
consensus_6778#0 GTGCCCAACTTGTGGCATGAAATTTCTCGACAAGAAAGGA-TTACG---AGCGCATAGCA 1007
consensus_6778#1 GTGAGCAGTTGGTGGCATGAAGTTTCAGGACAAGAGAGGGGCTACGCTNNGCACATGGTA 647
*** ** * ********** **** ******* *** **** ** *** * *
consensus_6778#0 TAG-TGCACTCGCGACGA-GCGACCGTTTGGCTGCCGCTATTGTCCAAAGATGTTCAAAA 1065
consensus_6778#1 GGGGTACNATTCGGACGAAGAAAGCCTTTGGCCGTGGCAGN------------------- 688
* * * * ***** * * * ****** * **
consensus_6778#0 CTGCTAAAACGCTGAAAAACCACGAAAATCTCCACCAAGGTGTAACATTTTCCTGTACGA 1125
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 TGTGCGGAAAAAGCTATAAGCATCAATCGCTGCTATACGTGCACATGAAAAAATGTCATG 1185
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 ACGAGGGTAAAACTGACAAATTGAAATTGGAAAATGATTCTAACTGAAAAAGTAAGACAA 1245
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 ACTACGCTATGAGTCCCATAGCACTCTGTATGTAAATGATACACGCGATTCTTTCACGTG 1305
consensus_6778#1 ------------------------------------------------------------
consensus_6778#0 AGTTGATGTATAAACTTTGCTTTGTAATTCCCCCC 1340
consensus_6778#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||