These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 878 fasta sequence [CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCGGTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTAAGAAGGGCCTAGAGATTGAGAAACAAACAGC-AAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGTCGTTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACGGGTGTGTATGTGTTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAACCGCAAGGCAAACCCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCAACAACACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC] [+] EMBL BM583706 [CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCGGTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTAAGAAGGGCCTAGAGATTGAGAAACAAACAGC AAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGT AACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATAC ] [+] EMBL BM629924 [ ccgGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTAAGAAGGGCCTAGAGATTGAGAAACAAACAGCAAAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCG ] [+] EMBL BM577427 [ ccgGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCAAAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGAGTGTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAACGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCCGTGAGAAGGGGCTAGAGATTGAGAAACAAACAGC AAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACGGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGTCGTTTGTG ] [+] EMBL BX620129 [ GCCTAGAGATTGAGAAACAAACAGC AAAAAAAAAAAAGACCCGAGAAAGAAAGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGACACACACAGTCACAGCACGCTCTCAATCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCATACCCTGCCGCTGCTCTCCGTCGTTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACGGGTGTGTATGTGTTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAACCGCAAGGCAAACCCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCAACAACACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC] consensusID : consensus_6779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CCCGAGGTTTAACACCCGTCCCGTGAGCCCCGTTTGGATTGTCCAATNTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCATTTGCGGTGTCTGTCAAACGACTGAAAACATACCTTAGCACACATACCACACACAGTCACAGGCACGCTCTCAATCACGTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGGTGACCCCGGTGGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCTGCGTCCTCCCGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAAACGCAAGGAAACCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCACAACACAGGACGACTGCGGTCCCGAAAAGGAGCCCACACCCTC] [+] EMBL AL694131 [CCCGAGGTTTAACACCCGTCCCGTGAGCCCCGTTTGGATTGTCCAATNTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCATTTGCGGTGTCTGTCAAACGACTGAAAACATACCTTAGCACACATACCACACACAGTCACAGGCACGCTCTCAATCACGTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGGTGACCCCGGTGGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCTGCGTCCTCCCGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACACACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAATCAAACGCAAGGAAACCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGTGCCAGTCGCGATCACAACACAGGACGACTGCGGTCCCGAAAAGGAGCCCACACCCTC] consensusID : consensus_6779#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [AGAATCGCCACGAGGTNGTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACATATGCCACACACAGTCACAGGCACGGCTCTCAAGTCACGTTCCAAAACCACCAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACAGCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAAGTCAAACGCA] [+] EMBL BX469177 [AGAATCGCCACGAGGTNGTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCCCCGTTTGGATCGTCCAAGTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTTGCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACATATGCCACACACAGTCACAGGCACGGCTCTCAAGTCACGTTCCAAAACCACCAACGCGTGCGTGTGTGTGTGTGTGGTGTTGTGGGTGACCCGGGTGGAGGGAGGCGCGTGCGCACACCAGACCCTGCCGCTGCTCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACAGCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAAGTCAAACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6779#0 CCGCCGAAATCGTTCCAGGAATCTCAAGATGGCGATCTGCCGTGACGGGTAACAGAAGCG 60 consensus_6779#1 ------------------------------------------------------------ consensus_6779#2 ------------------------------------------------------------ consensus_6779#0 GTGCCGTGTGCGTTGTCGTCGTGTGCTTAGCTCCGCAGCCACTTGCCCAAGGAAACAGCA 120 consensus_6779#1 ------------------------------------------------------------ consensus_6779#2 ------------------------------------------------------------ consensus_6779#0 AAACGGTTCTTTTTCCCACCCGGCCGCCCCAGTGCATCCAGCGGTCACGAAGCGAAGTGT 180 consensus_6779#1 ------------------------------------------------------------ consensus_6779#2 ------------------------------------------------------------ consensus_6779#0 GTTCACCAGCAAAAGCGTTTTCCGTGCGTCGCTAAAACGCACAGTGCACGCGACAGACAA 240 consensus_6779#1 ------------------------------------------------------------ consensus_6779#2 ------------------------------------------------------------ consensus_6779#0 CGAATCTATTCCAATCAACCTCGATAGAGAGAGCGAGAGAGAGAGAGTGAGACTCGGCCC 300 consensus_6779#1 ------------------------------------------------------------ consensus_6779#2 ------------------------------------------------------------ consensus_6779#0 GTAAGAAGGGCCTAGAGATTGAGAAACAAACAGCAAAAAAAAAAAAGACCCGAGAAAGAA 360 consensus_6779#1 ------------------------------------------------------------ consensus_6779#2 -------------------------------------------AGAATCGCCACGAGGTN 17 consensus_6779#0 AGGAAAGCAGGGAAAGAATAAGAAACACCCGTCCCGTGGAGCCCCGTTTGGATCGTCCAA 420 consensus_6779#1 -------------CCCGAGGTTTAACACCCGTCCCGTG-AGCCCCGTTTGGATTGTCCAA 46 consensus_6779#2 GTAAAAGCAGGGAAAGAATAAGAAACACCGTCCCGTTGGAGCCCCGTTTGGATCGTCCAA 77 * ****** ** ** ************** ****** consensus_6779#0 -GTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTT 479 consensus_6779#1 TNTCGTCAAGCAAGGGAGTGTAAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCC-ATTT 105 consensus_6779#2 -GTCGTCAAGCAAGGGAGTGTNAACGCGTGCCCGCAGCAGCAGCAGCAGCAGCCCCATTT 136 ******************* ********************************* **** consensus_6779#0 GCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACACAGA-CACACACAGTCA 538 consensus_6779#1 GCGGTGTC-TGTCAAA-CGACTGAAAACATACCTTAGCACACATAC--CACACACAGTCA 161 consensus_6779#2 GCGGTGTCCTGTCAAAACGACTGAAAACATACCTAAGCACACATATGCCACACACAGTCA 196 ******** ******* ***************** ******** * ************ consensus_6779#0 CAG-CACG-CTCTCAA-TCACGTCCCAAAACCCACCAACGCGTGCGTGTGTGTGCGTG-- 593 consensus_6779#1 CAGGCACG-CTCTCAA-TCACGTTCCAAAAACCAACAACGCGTGCGTGTGTGTGTGTGTG 219 consensus_6779#2 CAGGCACGGCTCTCAAGTCACGTTCCAAAA-CCACCAACGCGTGCGTGTGTGTGTGTGTG 255 *** **** ******* ****** ****** *** ******************* *** consensus_6779#0 GTGTTGTGGG-TGACCCGGGTGGAGGGAGGCG-CG--TGCGCACACCAGACCCTGCCGCT 649 consensus_6779#1 GTGTTGTGGGGTGACCCCGGTGGAGGGAGGCGGCGGTTGCGCACACCAGAACCCTGCGCT 279 consensus_6779#2 GTGTTGTGGG-TGACCCGGGTGGAGGGAGGCG-CG--TGCGCACACCAGACCCTGCCGCT 311 ********** ****** ************** ** ************* ** **** consensus_6779#0 GC---TCTCCGTCGTTTGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACA 706 consensus_6779#1 GCGTCCTCCCGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACA 339 consensus_6779#2 GC--TCTCCGGTCGTTCGTGTGGAGGTGGTGTTGTCCTCCGAAAAGAGAGAAGCGACACA 369 ** * ****** ******************************************* consensus_6779#0 -CACACAC--GGGTGTGTATGTGT-TGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAA 762 consensus_6779#1 -CACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAA 398 consensus_6779#2 GCACACACACGGGTGTGTATGTATGTGTGTGTGTGTGTGTGTGGTCCCGGTTTTTCACAA 429 ******* ************ * *********************************** consensus_6779#0 -TCAACCGCAAGGCAAACCCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGT 821 consensus_6779#1 -TCAAACGCAAGGAAA--CCTGTCCGCGATCAATCAAAGAGCCACACAGCCCTCGGCGGT 455 consensus_6779#2 GTCAAACGCA-------------------------------------------------- 439 **** **** consensus_6779#0 GCCAGTCGCGATCAACAACACAGAACGACCGCGGTCCCGAAAAGGAGCCCACACCCC- 878 consensus_6779#1 GCCAGTCGCGATCA-CAACACAGGACGACTGCGGTCCCGAAAAGGAGCCCACACCCTC 512 consensus_6779#2 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||