These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCGCTCGTCAGTGGACGTACGAACGCAGAACGCGCTTTTTTCGCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTGTGAGTGAGTGTGCGTGTGTATGCGTGAAGGGTGTGTGTGTGTGTGTGTGAGTGTGTATGTGTGTGTGTGTGGGTGCGTGCAAGCCAGTGTGTCCCGAATGTTGGGCACATTCCTGGCTAATTAGTTAATTAGTGTCAACAATCAACTTCGCGAAACCTCGCCAAGCCGACCACCACGATCACAACAATCATTCCGTACGCTACCAGCAGCACCGCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCAT] [+] EMBL BM619737 [CCGCGCTCGTCAGTGGACGTACGAACGCAGAACGCGCTTTTTTCGCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTGTGAGTGAGTGTGCGTGTGTATGCGTGAAGGGTGTGTGTGTGTGTGTGTGAGTGTGTATGTGTGTGTGTGTGGGTGCGTGCAAGCCAGTGTGTCCCGAATGTTGGGCACATTCCTGGCTAATTAGTTAATTAGTGTCAACAATCAACTTCGCGAAACCTCGCCAAGCCGACCACCACGATCACAACAATCATTCCGTACGCTACCAGCAGCACCGCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCAT] consensusID : consensus_678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCATCGTGTACAACTACAACCCGACTAGTGCCGTGCACTACTTGCCGGTGGATGACTAGGTAACGCAGCCCGAGCCCGAACCCGTACCGTGCCCGGGGAAGGGTGGCGGGTCGGTGCTTCGACAGCTTCGGCAGCTTCGCCGGCGGCTCCAGCGCACCCTGCTGCAGTGGGAGGCGAGCGAGTACGTCGACCGGGACTACTCGTACGAGGA] [+] EMBL BM631589 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCATCGTGTACAACTACAACCCGACTAGTGCCGTGCACTACTTGCCGGTGGATGACTAGGTAACGCAGCCCGAGCCCGAACCCGTACCGTGCCCGGGGAAGGGTGGCGGGTCGGTGCTTCGACAGCTTCGGCAGCTTCGCCGGCGGCTCCAGCGCACCCTGCTGCAGTGGGAGGCGAGCGAGTACGTCGACCGGGACTACTCGTACGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_678#0 CCGCGCTCGTCAGTGGACGTACGAACGCAGAACGCGCTTTTTTCGCGGGCCAGCCCACCC 60 consensus_678#1 ------------------------------------------------------------ consensus_678#0 CCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCT 120 consensus_678#1 ------------------------------------------------------------ consensus_678#0 GCCTTTCCGTCGATCATTTCGGAACTGTGAGTGAGTGTGCGTGTGTATGCGTGAAGGGTG 180 consensus_678#1 ------------------------------------------------------------ consensus_678#0 TGTGTGTGTGTGTGTGAGTGTGTATGTGTGTGTGTGTGGGTGCGTGCAAGCCAGTGTGTC 240 consensus_678#1 -----------------------------------CCGCCCACGCGTCCGCCCACGCGTC 25 * ** * *** * *** consensus_678#0 CCGAATGTTGGGCACATTCCTGGCTAATTAGTTAATTAGTGTCAACAATCAACTTCGCGA 300 consensus_678#1 CGGGCCA----GCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCG-GG 80 * * ** ** ** * * ** ** ***** * consensus_678#0 AACCTCGCCAAGCCGACCACCACGATCACAACAATCATTCCGTACGCTACCAGCAGCACC 360 consensus_678#1 TTTGTTGTCTAGT-GTCGCCTGCCTTTCCGTCGATCATTTCGGAA--------------C 125 * * * ** * * * * * * * ****** ** * * consensus_678#0 GCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAAC 420 consensus_678#1 TCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAAC 185 *********************************************************** consensus_678#0 ACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCA 480 consensus_678#1 ACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCA 245 ************************************************************ consensus_678#0 CTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGT 540 consensus_678#1 CTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGT 305 ************************************************************ consensus_678#0 CAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTAC 600 consensus_678#1 CAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTAC 365 ************************************************************ consensus_678#0 TACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCAT- 659 consensus_678#1 TACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCATC 425 *********************************************************** consensus_678#0 ------------------------------------------------------------ consensus_678#1 GTGTACAACTACAACCCGACTAGTGCCGTGCACTACTTGCCGGTGGATGACTAGGTAACG 485 consensus_678#0 ------------------------------------------------------------ consensus_678#1 CAGCCCGAGCCCGAACCCGTACCGTGCCCGGGGAAGGGTGGCGGGTCGGTGCTTCGACAG 545 consensus_678#0 ------------------------------------------------------------ consensus_678#1 CTTCGGCAGCTTCGCCGGCGGCTCCAGCGCACCCTGCTGCAGTGGGAGGCGAGCGAGTAC 605 consensus_678#0 -------------------------- consensus_678#1 GTCGACCGGGACTACTCGTACGAGGA 631 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||