These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1336 fasta sequence [ACCCGGGCAAGTACGCCCAGCACCTGGAACGATGGCTCGCCTGCTACCCACCGCAGCAGCTGTACATCATCGACGGGGAGCAGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTTGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAA-AAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAG----AGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG-G-GAAAGAGTACTGTTAAGAAGCTGCCGTTTTTTGGTTTT-AACACATCGTGTTTCGGGTGAAATGCGCATG---TTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGAGAG-AAAAAAATACCTCAATCTGGTCTAATCTTCGACAATAGCAACCAGCAGCTGCTAGCGTGTGTATTTAAACTGTTTGAGTTTAGTCACTGTGTCACTACAAAACCCTTATTTGGAACTGAACAGCTCTAGCACCAAACGAAGCTCTAAAACAAGTGCAGAACCAGTACGCAGTGCGCGGTGATGCGGCCATCCTAGCCATATAAGTATGTAAGTGATATTATATTTTCCTACTGTATCGTTTGTTTTAACTCTTTGGTTTAACACTTCACTCGTTAGTACAACAAGGGCAGAAGATTGTGTTACGCGACAGTTGAAAGTTGACTAATTATTTGTATGTATCGAAGGCCACTAATTCGTTTAAACAAAGGTTTAA] [+] EMBL CNS08IVZ [ACCCGGGCAAGTACGCCCAGCACCTGGAACGATGGCTCGCCTGCTACCCACCGCAGCAGCTGTACATCATCGACGGGGAGCAGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTTGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACTTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAGAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAG AGAGAGAGCTCTGTTAAGCCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTA TATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G GAAAGAGTACTGTTAAGAAGCTGCCGTTTTTTGGTTTT AACACATCGTGTTTCGGGTGAAATGCGCATG TTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGAGAG AAAAAAATACCTCAATCTG ] [+] EMBL BM628795 [ ccgCAATCGGAACAAGTGTCTCGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCT AAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAA AAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAAT AGAGAGAG AGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCATTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G G ] [+] EMBL BM581595 [ ccgCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCT AAACGGGCGCATATACATACATAAATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGATAGGGAATGTACAGTGGCAGCAGCACTAGTGAAGGCATAGTAACTGTACAGCTTTGTAT AAAA AAGTAGTATCGACGTTGGATTAATGCACTGCAGGAATGTTGTAAGATGTTATAAT AGAGAG AGAGTGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTAAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTATGGTTAGCCTCATTAGGAGAGAAAGAGTACCGTTAAGAAGCTGCCG TTTTTGGTTTT AACACATCGTGTTTCGGGTGAAATGCGCATG TTTTTTTTTATGTTGACTATCTTTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCTAATTATTAACTATc ] [+] EMBL BM589977 [ ccgAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAA AAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTATGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G GCAAGAGTACTGTTAAGAAGCTGCCG TTTTTGGTTTTAAACACATCGTGTTTCGGGTGAAA ACGCATGTTTTTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGA AG AAAAAATACCTCAATCTGGTCT ] [-] EMBL CNS08IW0 [ CACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAGAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAG AGAGAGAGCTCTGTTAAGCCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G GAAAGAGTACTGTTAAGAAGCTGCCGTTTTTTGGTTTT AACACATCGTGTTTCGGGTGAAATGCGCATG TTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGAGAGAAAAAAAATACCTCAATCTGTTCTAATCTTCGACAATAGCAACCAGCAGCTGCTAGCGTGTGTATTTAAACTGTTTGAGTTTAGTCACTGTGTCACTACAAAACCCTTATTTGGAACTGAACAGCTCTAGCACCAAACGAAGCTCTAAAACAAGTGCAGAACCAGTACGCAGTGCGCGGTGATGCGGCCATCCTAGCCATATAAGTATGTAAGTGATATTATATTTTCCTACTGTATCGTTTGTTTTAACTCTTTGGTTTAACACTTCACTCGTTAGTACAACAAGGGCAGAAGATTGTGTTACGCGACAGTTGAAAGTTGACTAATTATTTGTATGTATCGAAGGCCACTAATTCGTTTAAACAAAGGTTTAA] consensusID : consensus_6782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGCCCACGCGTCCGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTCGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTC] [+] EMBL BM610737 [CCGCCCACGCGTCCGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTCGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6782#0 ACCCGGGCAAGTACGCCCAGCACCTGGAACGATGGCTCGCCTGCTACCCACCGCAGCAGC 60 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TGTACATCATCGACGGGGAGCAGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGC 120 consensus_6782#1 ------CCGCCCACGCGT--CCGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGC 52 * * *** * * ************************************** consensus_6782#0 AGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGA 180 consensus_6782#1 AGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGA 112 ************************************************************ consensus_6782#0 AGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTTGGCAAGTCGAAAG 240 consensus_6782#1 AGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTCGGCAAGTCGAAAG 172 ********************************************** ************* consensus_6782#0 GTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCA 300 consensus_6782#1 GTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCA 232 ************************************************************ consensus_6782#0 TTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGT 360 consensus_6782#1 TTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGT 292 ************************************************************ consensus_6782#0 GGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACG 420 consensus_6782#1 GGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACG 352 ************************************************************ consensus_6782#0 CCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTG 480 consensus_6782#1 CCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTG 412 ************************************************************ consensus_6782#0 TGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAA 540 consensus_6782#1 TGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAA 472 ************************************************************ consensus_6782#0 AGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACT 600 consensus_6782#1 AGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACT 532 ************************************************************ consensus_6782#0 GCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGA----GAGAGCTCTGTTAAG 656 consensus_6782#1 GCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAG 592 ***************************************** *************** consensus_6782#0 TCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGG 716 consensus_6782#1 TCAGTCAGTCAGTCAGTCAGTC-------------------------------------- 614 ********************** consensus_6782#0 AGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTG 776 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TGCGCATACGTGTGTAAGGTTAGCCTCATTAGGGGAAAGAGTACTGTTAAGAAGCTGCCG 836 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TTTTTTGGTTTTAACACATCGTGTTTCGGGTGAAATGCGCATGTTTTTTTTTATTTTGAC 896 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTA 956 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 GAGAGAGAAAAAAATACCTCAATCTGGTCTAATCTTCGACAATAGCAACCAGCAGCTGCT 1016 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 AGCGTGTGTATTTAAACTGTTTGAGTTTAGTCACTGTGTCACTACAAAACCCTTATTTGG 1076 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 AACTGAACAGCTCTAGCACCAAACGAAGCTCTAAAACAAGTGCAGAACCAGTACGCAGTG 1136 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 CGCGGTGATGCGGCCATCCTAGCCATATAAGTATGTAAGTGATATTATATTTTCCTACTG 1196 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TATCGTTTGTTTTAACTCTTTGGTTTAACACTTCACTCGTTAGTACAACAAGGGCAGAAG 1256 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 ATTGTGTTACGCGACAGTTGAAAGTTGACTAATTATTTGTATGTATCGAAGGCCACTAAT 1316 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TCGTTTAAACAAAGGTTTAA 1336 consensus_6782#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||