These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 734 fasta sequence [AATCGCACGAGGCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG-AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACGTTTGAGATTGTAAT] [+] EMBL BX466237 [AATCGCACGAGGTGAACAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATAT ] [+] EMBL BM621755 [ccgccCACGCGTCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGTTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACGAAAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTA ] [+] EMBL BM588219 [ CCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTC ] [+] EMBL BX627777 [ GCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACGTTTGAGATTGTAAT] [+] EMBL BX626646 [ TCTGCGTCGTCTGTCTCGTCTCGCGCCCAATACATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAGCGTACTTTATACTGAACAGCGTAAAGACG AAAGCCGTTATCACTCCAACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTAATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCGATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACCAATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGAGA TAAAAAACGTTTGAGATTGTAA ] consensusID : consensus_6783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAGCGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTAATGCGGATCTTCCACCGATTACTGGCAAGC] [+] EMBL AL692873 [CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATTGTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGAGCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAAACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATATCAATTAATCTGTCAAGTTGTGCAACGGGCCCTGTACGATGCATCGTGGCACAAACGTTAAGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAGCGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGGGCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTAATGCGGATCTTCCACCGATTACTGGCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6783#0 AATCGCACGAGGCCGCCAACCGGTAGCTCTGCGTCGTCTGTCTCGTCTCGCGCCCAATAC 60 consensus_6783#1 ------------------------------------------------------------ consensus_6783#0 ATCCTTGTGTAGTTTGTTTTTACTTCATAACGACGCATCGCAAGCGAGAAAGCAGTAATT 120 consensus_6783#1 ----------------CCCCGAGGTTATTACGACGCATCGCAAGCGAGAAAGCAGTTATT 44 * * ** *************************** *** consensus_6783#0 GTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGCTGTGCCTGATGTTCCTCTCGA 180 consensus_6783#1 GTTTGAAAATGAAATGGACTGGGTGTTCGTTCGCTGTGTTGTGCCTGATGTTCCTCTCGA 104 ************************************** ********************* consensus_6783#0 GCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAA 240 consensus_6783#1 GCACGGTGGTGGATGGTGGCATCATACGGTGGTGGGATCGTTGGTGGAAATTCCATCGAA 164 ************************************************************ consensus_6783#0 ACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATAT 300 consensus_6783#1 ACTCATTCGTCAGCTCTAGTCTCATCTTTGAGGATTGTGGCACCAAGTACGATGTAATAT 224 ************************************************************ consensus_6783#0 CAATTAATCTGTCAAGTTGTGCAACGGCGCCCTGTACGATGCATCGTGGCACAAACGTTA 360 consensus_6783#1 CAATTAATCTGTCAAGTTGTGCAACGG-GCCCTGTACGATGCATCGTGGCACAAACGTTA 283 *************************** ******************************** consensus_6783#0 AGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACGGACAGTGTGCTCAAGCATGAAG 420 consensus_6783#1 AGGTGAAGGCTGAATTCAGCGCCAACGGCGCCTCTACAGACAGTGTGCTCAAGCACGAAG 343 ************************************* ***************** **** consensus_6783#0 CGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCAACCACCTGTGAGG 480 consensus_6783#1 CGTACTTTATACTGAACAGCGTAAAGACGAAAGCCGTTATCACTCCGACCACCTGTGAGG 403 ********************************************** ************* consensus_6783#0 GCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCCGCAGATATCTACGTTA 540 consensus_6783#1 GCAGCGTGTGTCCGCTCCAGGGTACGCAAGGACTTCTGTTCTCAGCAGATATCTACGTTA 463 ******************************************* **************** consensus_6783#0 ATGCGGATCTTCCACCGATTAATGGCAAGCTTCGCTGGGAGTTGAGAAATAAGTGGGGCG 600 consensus_6783#1 ATGCGGATCTTCCACCGATTACTGGCAAGC------------------------------ 493 ********************* ******** consensus_6783#0 ATGTGCTGCTTTGCTATCAGCTACCAGTTTGTATCGAGTGAGTGGATTGGTGATCATACC 660 consensus_6783#1 ------------------------------------------------------------ consensus_6783#0 AATCGGCTAGCCAAACCGTAGCCGTTCGTTCTGGAGCTGCATCAATGANATTANAAAACG 720 consensus_6783#1 ------------------------------------------------------------ consensus_6783#0 TTTGAGATTGTAAT 734 consensus_6783#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||