These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 661 fasta sequence [CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATACGCGAAAGCCAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCAGAGGTGACGG] [+] EMBL BM644326 [CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTGCGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATACGCGAAAGCCAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCAGAGGTGACGG] [+] EMBL BM651629 [CCG TTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATAC AAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATATTGTGGAGCGATACG ] [+] EMBL BM608775 [ ccgCAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTGCGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCG ] [+] EMBL CNS09ETT [ TACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGCCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTAACTGTGTGCAGTATCGCAAACTAACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTCATTGCGTTACTGAAAATGGTCGAAAACCATCAGCTCGAGCATTTTAC ] [+] EMBL BM610889 [ ccgGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATATTGTGGAGCGATACGCGAAAGCCAGTGCCTTC ] consensusID : consensus_6788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCGTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTACATCTGCAAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTGNTGATTG] [+] EMBL AL694333 [ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCGTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTACATCTGCAAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTGNTGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6788#0 CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATC 60 consensus_6788#1 -ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCG--TGTATATGCCTGCTCACTAATC 57 * * * * **************** ********************** consensus_6788#0 CAGAGCGATTCATTTCC-GTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAG-CCACA 118 consensus_6788#1 CAGAGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACA 117 ***************** ************* ********************** ***** consensus_6788#0 AGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAA-CAGTAACA 177 consensus_6788#1 AGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACA 177 *************************************************** ******** consensus_6788#0 GTAGTGTGTTAAGGTCATCTGCTGGTGTCGA-----GACATTAACCCCGACAATTTACTA 232 consensus_6788#1 GTAGTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTA 237 **************************** * *********************** consensus_6788#0 CATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAAT 292 consensus_6788#1 CATCTGCA-AGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAAT 296 ******** *************************************************** consensus_6788#0 CATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAG 352 consensus_6788#1 CATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAG 356 ************************************************************ consensus_6788#0 CAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCG 412 consensus_6788#1 CAAAAACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCG 416 ********************** ************************************* consensus_6788#0 GCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAA-TGGTC 471 consensus_6788#1 GTGTGGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTC 476 * ***************** ****************************** *** ***** consensus_6788#0 GAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTG 531 consensus_6788#1 GAAAACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTG 536 ****************************** ***************** *********** consensus_6788#0 CTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATA 591 consensus_6788#1 NTGATTG----------------------------------------------------- 543 ****** consensus_6788#0 CGCGAAAGCCAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCA 651 consensus_6788#1 ------------------------------------------------------------ consensus_6788#0 GAGGTGACGG 661 consensus_6788#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||