These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 610 fasta sequence [GAATNGGCCAG-GATTA-ATTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGTGTCTGAGTGTGCTGGGTGGGCCGGGTGGACCGTTTGATGAGCGGAACATCTG] [+] EMBL AL932216 [GAATNGGCCAG GATTA ATTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGTGTCTGAGTGTGCTGGGTGGGCCGGGTGGACCGTTTGATGAGCGGAACATCTG] [+] EMBL AL932217 [GAATCGCCCCGAGGTTACGTTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGG ] [+] EMBL BX623836 [ GCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTC ] consensusID : consensus_6790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [TTCCCCGAGGTTTNAGTTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCNGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTACCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCGGCTGACACTGCAGCAGCGTTGCTCGCGCTGTGTTCTGGATCCGAATGCACCCGGGACTATACCGGCGGTACTAGCTCGTTCGATGTCGGCCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGGAATCTTGATTCGTACCGGTAGCATATGGCCGGGCGTACGAGTGAAAATCCCAAACGGGACTGGTAGCAGTGTCGCGACCGGCTTGGGAGGNCTCGAACCACCAAGCAGCATCCTTGCCCGGCACCAACTTCTCCAATGTGTTAGCAGGAAAATCAACGTACCTGGCTCGTACCGTGGAAC] [+] EMBL AL692708 [TTCCCCGAGGTTTNAGTTGGTGCTGTGGGCGATTGCGGGCATCGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCATACCTGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCNGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTACCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCGGCTGACACTGCAGCAGCGTTGCTCGCGCTGTGTTCTGGATCCGAATGCACCCGGGACTATACCGGCGGTACTAGCTCGTTCGATGTCGGCCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGGAATCTTGATTCGTACCGGTAGCATATGGCCGGGCGTACGAGTGAAAATCCCAAACGGGACTGGTAGCAGTGTCGCGACCGGCTTGGGAGGNCTCGAACCACCAAGCAGCATCCTTGCCCGGCACCAACTTCTCCAATGTGTTAGCAGGAAAATCAACGTACCTGGCTCGTACCGTGGAAC] consensusID : consensus_6790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [GAATCGCACGAGGTTAATCAATTACGTTGGTGCTGTGNGGCGATTGCGGGCATCTGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCCCATACCTGGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGGACGCACGTGTGCGGCGGTACGATCCTGGAAACCCCGTCTGTCTACGTACCTTCGGAGCCGGCGGACCTCACTGGGCTGTTCCCTTCGGGGAACCCGAACCCAAGAGCTTCCGGAACGGGTTACTTATCGGGAACACAAGTTCCCGGNTTAAGGGGACCCCACGGAGCCCAAAANNTGATCTTAAACCAGGCCAATTCTCTGGAGCCCCGGTGCCCTGGGGCCTTGGAACCGAAAGCCCGGGCCCAAAGAGGGNGCCAACGGTTTGGCCCCTGTTTCCCCCGGAGGGATTNCAGGGTTCGGGTTTACTACCCTCTTTCTNTGGGCGCGCGCCAAACTTTTTTCCCCCCCAGGCGGGCGAACAACACAACTTTTCGGGGGNCCACAA] [+] EMBL AL696969 [GAATCGCACGAGGTTAATCAATTACGTTGGTGCTGTGNGGCGATTGCGGGCATCTGTTGCCGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGGCGAACTACCCCATACCTGGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGGACGCACGTGTGCGGCGGTACGATCCTGGAAACCCCGTCTGTCTACGTACCTTCGGAGCCGGCGGACCTCACTGGGCTGTTCCCTTCGGGGAACCCGAACCCAAGAGCTTCCGGAACGGGTTACTTATCGGGAACACAAGTTCCCGGNTTAAGGGGACCCCACGGAGCCCAAAANNTGATCTTAAACCAGGCCAATTCTCTGGAGCCCCGGTGCCCTGGGGCCTTGGAACCGAAAGCCCGGGCCCAAAGAGGGNGCCAACGGTTTGGCCCCTGTTTCCCCCGGAGGGATTNCAGGGTTCGGGTTTACTACCCTCTTTCTNTGGGCGCGCGCCAAACTTTTTTCCCCCCCAGGCGGGCGAACAACACAACTTTTCGGGGGNCCACAA] consensusID : consensus_6790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [AATGCCCGAGGATAGTTGGTGCTGTGGGCGAACTACATACTGGTGTCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGT] [+] EMBL AL931293 [AATGCCCGAGGATAGTTGGTGCTGTGGGCGAACTACATACTGGTGTCATCCAGCGCGCGTTCCTAACCTCCCGGACGCACGTGTGCGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTCCTGCTTCTGGACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGCTGACACGCAGCAGGTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGATATACCGGCGGTACTAGCTCGTTCGATGTCGCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTTACGAATCTGATTCGTCCGGTAGCATTGCCGGCGTTCGATGAAATCCCAACCGGGCTGGTGCGTGTCGGCGGCTGGGGCTCGACCACCAACAGCATCCTGCCCGGCAACAACTTCTCCAATGTGTTGCAGAAAATCAACGTACTGCTCGTACCGTGGAACGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6790#0 ---------GAATNGGCCAGGATTAATTGGTGCTGTGGG-CGATTGCGGGCATC-GTTGC 49 consensus_6790#3 ------------------------------------------------------------ consensus_6790#1 ----------TTCCCCGAGGTTTNAGTTGGTGCTGTGGG-CGATTGCGGGCATC-GTTGC 48 consensus_6790#2 GAATCGCACGAGGTTAATCAATTACGTTGGTGCTGTGNGGCGATTGCGGGCATCTGTTGC 60 consensus_6790#0 CGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGG 109 consensus_6790#3 ------------------------------AATGCCCGAGGATA--GTTGGTGCTGTGGG 28 consensus_6790#1 CGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGG 108 consensus_6790#2 CGTTGTCGTTGATGCTGCTCCCGAGCGCAGAATCTTCGGCGGTACGGATGCGTTCGAGGG 120 *** ** * ** * ** * *** consensus_6790#0 CGAACTACC--ATACCTGG-TGTCCATCCAGCGCGCGTTCCTAACCTCCCGG-ACGCACG 165 consensus_6790#3 CGAACTAC---ATAC-TGG-TGTC-ATCCAGCGCGCGTTCCTAACCTCCCGG-ACGCACG 81 consensus_6790#1 CGAACTACC--ATACCTGG-TGTCCATCCAGCGCGCGTTCCTAACCTCCCGG-ACGCACG 164 consensus_6790#2 CGAACTACCCCATACCTGGGTGTCCATCCAGCGCGCGTTCCTAACCTCCCGGGACGCACG 180 ******** **** *** **** *************************** ******* consensus_6790#0 TGTGCGG-CGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCT-CCTGCTTCTG 223 consensus_6790#3 TGTGCGG-CGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCT-CCTGCTTCTG 139 consensus_6790#1 TGTGCNGGCGGTACGATCCTGAACCCGCTGCACGTACTGACGGCGGCCTACCTGCTTCTG 224 consensus_6790#2 TGTGCGG-CGGTACGATCCTGGAAACCCCGTCTGT-CTAC--GTACCTTCGGAGCCGGCG 236 ***** * ************* * * * * ** ** * * * ** * consensus_6790#0 GACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGC 283 consensus_6790#3 GACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGCCGGC 199 consensus_6790#1 GACCGACCAGAGCTCGAGGTTTGAAATCGTGGCCGGCAATTTACGCATTGACCGGC-GGC 283 consensus_6790#2 GACCTCACTGGGCT----GTTCCCTTCGGGGAACCCGAACCCAAGAGCTTCCGGAACGGG 292 **** * * *** *** * * * ** * * * * * ** consensus_6790#0 TGACAC-GCAGCAG----GTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGA-TATAC 337 consensus_6790#3 TGACAC-GCAGCAG----GTGCTCGGTGTGTTCTGGATCCGAATGCACCCGGGA-TATAC 253 consensus_6790#1 TGACACTGCAGCAGCGTTGCTCGCGCTGTGTTCTGGATCCGAATGCACCCGGGACTATAC 343 consensus_6790#2 TTACTT---ATCGG----GAACACAA---GTTCCCGGNTTAAGGGGACCCCACG--GAGC 340 * ** * * * * * * **** * * * **** * consensus_6790#0 CGGCGGTACTAGCTCGTTCGATGTCG--CTGTGGTCCGCACCTCGTCCGCCTTCTTCTTT 395 consensus_6790#3 CGGCGGTACTAGCTCGTTCGATGTCG--CTGTGGTCCGCACCTCGTCCGCCTTCTTCTTT 311 consensus_6790#1 CGGCGGTACTAGCTCGTTCGATGTCGGCCTGTGGTCCGCACCTCGTCCGCCTTCTTCTTT 403 consensus_6790#2 CCAAAANNTGATCTTAAACCAGGCCA----ATTCTCTGGAGCCCCGGTGCCCTGGGGCCT 396 * * ** * * * * * ** * * * * *** * * consensus_6790#0 ACGAA--TCTGATTCGT-CCGGTAGCAT-TGCC--GGCGTTCGAT--GAAATCCCAACCG 447 consensus_6790#3 ACGAA--TCTGATTCGT-CCGGTAGCAT-TGCC--GGCGTTCGAT--GAAATCCCAACCG 363 consensus_6790#1 ACGGAATCTTGATTCGTACCGGTAGCATATGGCCGGGCGTACGAGTGAAAATCCCAAACG 463 consensus_6790#2 TGGAACCGAAAGCCCGGGCCCAAAGAGGGNGCC-AACGGTTTGGC-------CCCTGTTT 448 * * ** ** ** * * ** * *** consensus_6790#0 GG-CTGGTGC--GTGTCGG---CGGCT----GGGGCTCGA-CCACCAA-CAGCATCCT-G 494 consensus_6790#3 GG-CTGGTGC--GTGTCGG---CGGCT----GGGGCTCGA-CCACCAA-CAGCATCCT-G 410 consensus_6790#1 GGACTGGTAGCAGTGTCGCGACCGGCTTGGGAGGNCTCGAACCACCAAGCAGCATCCTTG 523 consensus_6790#2 CCCCCGGAGG-GATTNCAG----GGTTC---GGGTTTACTACCCTCTTTCTNTGGGCGCG 500 * ** * * ** * ** * ** * * * * consensus_6790#0 CCCGGCAACAACTTCTCCAATGTGTT-GCAG-AAAATCAACGTACT--GCTCGTACCGTG 550 consensus_6790#3 CCCGGCAACAACTTCTCCAATGTGTT-GCAG-AAAATCAACGTACT--GCTCGTACCGTG 466 consensus_6790#1 CCCGGCACCAACTTCTCCAATGTGTTAGCAGGAAAATCAACGTACCTGGCTCGTACCGTG 583 consensus_6790#2 CGCCAAACTTTTTTCCCCCCCAGGCGGGCGAACAACACAACTTTTCGGGGGNCCACAA-- 558 * * * *** ** * ** ** **** * * ** consensus_6790#0 GAACGAGTGTCTGAGTGTGCTGGGTGGGCCGGGTGGACCGTTTGATGAGCGGAACATCTG 610 consensus_6790#3 GAACGAGT---------------------------------------------------- 474 consensus_6790#1 GAAC-------------------------------------------------------- 587 consensus_6790#2 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||