These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1248 fasta sequence [TAAACAAATATCCGGCATTGGCCGGTGTTTTATTTCCGCCTGAAAGTATGCACCTCCCAACCTGCCACTATCCATGCATGCTAGAAAGCGGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCCCCAACAGCACCGCACGTGCTAACCATGTTCCTGCTCTATAGCACTCCCTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTTTCTGTGTGTGCCACATCGGTGGCCATACACAGAAGTAGTGCATAATAAACAAACAACTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCTCTCCTAACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAACATACATGAACCAATGTGATTCCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGGCGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAAAAAAACGGATTGTACAGCAAACGAGCTACCATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATCGTTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTTTTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACGGGTTAGCGTCGGTGGTCGGTAGCTCCGACTC---GGCGGTGGTGGATCGGCTGAAGCAGCTGCCGAACGACTGTTCGTCCGAGGTGAGTAGCGAAATCAGCAAGCCCAGGATCACCGTCAGCAACGTGCCAAGGCAAC-AAACCACATGTAGCTGATCTGGTAGACGGAGGCGAACCAGGATGATGAACCGTCTTCCTGTCTGGCGGTGGTGGATAGCATTGACACATCGCTGGAAGC] [+] EMBL CNS08PM9 [TAAACAAATATCCGGCATTGGCCGGTGTTTTATTTCCGCCTGAAAGTATGCACCTCCCAACCTGCCACTATCCATGCATGCTAGAAAGCGGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCCCCAACAGCACCGCACGTGCTAACCATGTTCCTGCTCTATAGCACTCCCTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTTTCTGTGTGTGCCACATCGGTGGCCATACACAGAAGTAGTGCATAATAAACAAACAACTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCTCTCCTAACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAACATACATGAACCAATGTGATTCCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGGCGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAAAAAAACGGATTGTACAGCAAACGAGCTACCATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATCGTTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTTCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCGGGCGT ] [-] EMBL CNS08PM8 [ CTCCTAACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAACATACATGAACCAATGTGATTTCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGGCGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAAAAAAACGGATTGTACAGCAAACGAGCTACCATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATC TTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTTTTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACGGGTTAGCGTCGGTGGTCGGTAGCTCCGACTC GGCGGTGGTGGATCGGCTGAAGCAGCTGCCGAACGACTGTTCGTCCGAGGTGAGTAGCGAAATCAGCAAGCCCAGGATCACCGTCAGCAACGTGCCAAGGCAAC AAACCAC ] [-] EMBL CNS08GYB [ CATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAACCTTATCGGGATGCAATTTTCTTTGCGAAAGGAAATGGAGACTTGCAGAAATTCATAATTAAAATCGTTCCGTTTCCACCTTCATCGGCGATTGCGTCGAGGGAATGCTGCTCACGCTACGGTCCAGCCCACCGCGGTGTTCCTCCTCCGTGTACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTTTTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACG ] [-] EMBL BX627716 [ ATAATTAAAATCGTTCCGTTTCCACCCTCATGGGCGATTGCGTCGGGGGAATGCTGCTCACGCTACGGTCCAGCACACCGC GCTCNTCCTCCGCGGACGATCCATCCAGCTCGGAGGTAACCGTTTGCTGGCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGATACTGGCGTCGTTCTCCAGCGGTCGGGCGCCTCCTGCCGGCGTGAGCTTTACCGAGGTGCGCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGCTTTCCCTCACCGCCACTCACAACGACGCACTGGAGGGAGTCCTTCTTCGAGGATGCGGACGGGTTAGCGTCGGTGGTCGGTAGCTCCGACTCGGTGGCGGTGGTGGATCGGCTGAAGCAGCTGCCGAACGACGGTTCGTCAGAGGTGAGTAGCGAAATCAGCAGGCCCAGGATCACCGTCAGCAGCGTGCCGAGGCAACTGTACCACATGTAGCTGATCTGGTAGACGGAGGCGAACCAGGATGATGAACCGTCTTCCTGTCTGGCGGTGGTGGATAGCATTGACACATCGCTGGAAGC] consensusID : consensus_6793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 806 fasta sequence [GAGGCAGAATCGCCACGAGGTTANTTCGCTTTTCAAAAACAAATATCCGGCATTGGCCGGTGTTTTAT-TTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAGAAAGCGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACACGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGT-GTGCCACATCGAT-GTA-GTGCATAATAAACAAACAA-CTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATC-AAGTGCCAATGACACTCGCT-CCTAGCACTAGCCAGTAG-CAGAAGCAAC-ACGTGCACTAGACTCTTCACTTATTACCAAAAGCATACATGAACCAATGTGATTTCGAGCACGA-TTG-AAATGCCTCTCCGCGATTGGGCGNGGGGGCGGTAGATGACGTTCCC-GGTACGATCTCATTTCCTTNCCCGGGATGCGACACAGAAAAGGATTGTACAGCATACGAGCTATCTCGCCCTGGNCTCCTGTGTCCTTGTCCGCGCCCAANCTTACCGGGATGCAATTTTCTTTGCAAACAGGAAATGGAGACTTGCAGGCACAAGAGTTCATAAGTTGAGAAGTCGGTTCCGTTTCCACGCCTCATGGGCGATTGCGTCCAGGGGAATTGGCTTGCTCAACGCTACAGGGTGCCAGGAACAACGGGGCTCATCCTTCACGG] [+] EMBL BX466596 [GAGGCAGAATCGCCACGAGGTTANTTCGCTTTTCAAAAACAAATATCCGGCATTGGCCGGTGTTTTAT TTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAGAAAGCGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACACGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGT GTGCCACATCGAT GTA GTGCATAATAAACAAACAA CTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATC AAGTGCCAATGACACTCGCT CCTAGCACTAGCCAGTAG CAGAAGCAAC ACGTGCACTAGACTCTTCACTTATTACCAAAAGCATACATGAACCAATGTGATTTCGAGCACGA TTG AAATGCCTCTCCGCGATTGGGCGNGGGGGCGGTAGATGACGTTCCC GGTACGATCTCATTTCCTTNCCCGGGATGCGACACAGAA ] [+] EMBL BX468595 [ gcaagaATCGGCCGAGGTTTGATANTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAGAAAGCGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACACGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCATAACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTGGTGCCACATCGATGGTAGGTGCATAATAAACAAACAAGTTTTCATGCCCGATAATGGACACATAATAACCGTATCTCGAGCACCGAATCATCAAAGTGCCAATGACACTCGCTCCCTAGCACTAGCCAGTAGACAGAAGCAACAACGTGCACTAGACTCTTCACTTATTACCAAAA CATACATGAACCAATGTGATTTCGAGCACGATTTGAAAATGCCTCTCCGCGATTGGGCG GGGGGCGGTAGATGACGTTCCCGGGTACGATCTCATTTCCTTTCCCGGGATGCAACAAAAAAAAGGATTGTACAGCATACGAGCTATCTCGCCCTGGNCTCCTGTGTCCTTGTCCGCGCCCAANCTTACCGGGATGCAATTTTCTTTGCAAACAGGAAATGGAGACTTGCAGGCACAAGAGTTCATAAGTTGAGAAGTCGGTTCCGTTTCCACGCCTCATGGGCGATTGCGTCCAGGGGAATTGGCTTGCTCAACGCTACAGGGTGCCAGGAACAACGGGGCTCATCCTTCACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6793#0 -----------------------------------TAAACAAATATCCGGCATTGGCCGG 25 consensus_6793#1 GAGGCAGAATCGCCACGAGGTTANTTCGCTTTTCAAAAACAAATATCCGGCATTGGCCGG 60 ************************ consensus_6793#0 TGTTTTATTTCCGCCTGAAAGTATGCACCTCCCAACCT-GCCACTATCCATGCATGCTAG 84 consensus_6793#1 TGTTTTATTTCCGCCTGAAAGTATGCACCTCCAAACCTTGCCACTACCTCTACATGCTAG 120 ******************************** ***** ******* * * ******** consensus_6793#0 AAAGCGGTTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCCCCAACAGCAC- 143 consensus_6793#1 AAAGCG-TTTCTAAAGCTACCAAACAACAAGCTGCAGATTCAAACCTCTCCATCAGCACA 179 ****** ***************************************** *** ****** consensus_6793#0 CGCACGTGCTAACCATGTTCCTGCTCTATAGCACTCCCTTTT-CGGTTCAGGAGGAGCAT 202 consensus_6793#1 CGTACGTGCTAAACATTTTCCTACTCTATAGCACCCCCTTTTTCGGTTCAGGAGGAGCAT 239 ** ********* *** ***** *********** ******* ***************** consensus_6793#0 AACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGTGTTTCTGTGTGTGCCAC 262 consensus_6793#1 AACATCAAGACGCTATAAATATAAATACTGTGTGTGGTTGTGT--------GTGTGCCAC 291 ******************************************* ********* consensus_6793#0 ATCGGTGGCCATACACAGAAGTAGTGCATAATAAACAAACAACTTTCATGCCCGATAATG 322 consensus_6793#1 ATCGATG--------------TAGTGCATAATAAACAAACAACTTTCATGCCCGATAATG 337 **** ** *************************************** consensus_6793#0 GACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCTCTCCTA 382 consensus_6793#1 GACACATAATAACCGTATCTCGAGCACCGAATCATCAAGTGCCAATGACACTCGCTCCTA 397 ***************************************************** ****** consensus_6793#0 ACACTAGACAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAA-CAT 441 consensus_6793#1 GCACTAGCCAGTAGCAGAAGCAACACGTGCACTAGACTCTTCACTTATTACCAAAAGCAT 457 ****** ************************************************ *** consensus_6793#0 ACATGAACCAATGTGATTCCGAGCACGATTGAAATGCCTCTCCGCGATTGGGTGGGG--- 498 consensus_6793#1 ACATGAACCAATGTGATTTCGAGCACGATTGAAATGCCTCTCCGCGATTGGGCGNGGGGG 517 ****************** ********************************* * ** consensus_6793#0 CGGTGGATGACGTTCCCGGTACGATCTCATTTCCTTTCCCGGAATGCAA---AAAAACGG 555 consensus_6793#1 CGGTAGATGACGTTCCCGGTACGATCTCATTTCCTTNCCCGGGATGCGACACAGAAAAGG 577 **** ******************************* ***** **** * * *** ** consensus_6793#0 ATTGTACAGCAAACGAGCTACC--ATCCTGACCTCCTGTGTCCCTGTCCTTGTACCCAAC 613 consensus_6793#1 ATTGTACAGCATACGAGCTATCTCGCCCTGGNCTCCTGTGTCCTTGTCC--GCGCCCAAN 635 *********** ******** * **** *********** ***** * ***** consensus_6793#0 CTTATCGGGATGCAATTTTCTTTGCGAA-AGGAAATGGAGACTTGCAGA------AATTC 666 consensus_6793#1 CTTACCGGGATGCAATTTTCTTTGCAAACAGGAAATGGAGACTTGCAGGCACAAGAGTTC 695 **** ******************** ** ******************* * *** consensus_6793#0 ATAATT---AAAATCG-TTCCGTTTCCAC-CTTCATCGGCGATTGCGTCGAGGGAATGCT 721 consensus_6793#1 ATAAGTTGAGAAGTCGGTTCCGTTTCCACGCCTCATGGGCGATTGCGTCCAGGGGAATTG 755 **** * ** *** ************ * **** ************ **** * consensus_6793#0 GCTCACGCTACGGTCCAGCCCACCG-------CGGTGTTCCTCCTCCGTGTACGATCCAT 774 consensus_6793#1 GCTTGCTCAACGCTACAGGGTGCCAGGAACAACGGGGCTCATCCTTCACGG--------- 806 *** * * *** * *** ** *** * ** **** * * consensus_6793#0 CCAGCTCGGAGGTAACCGTTTGCTGTCCGAGGGAGTAGATGCTTGCCTGGCTCGAGCCGA 834 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 TACTGGCATCGTTCTCCAGCGGTCGGGCGCCACCGGCCGGCGTGAGCTTTACCGAGGTGC 894 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 GCATCATCAGCGCTAGCGGGGCCATCGAACCGACGCTCAGCTTGGCCGCGGTGGTACGTT 954 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 TTCCCTCACCGCCACTCACAACGACGCATTGGAGGGAGTCTTTCTTCGAGGATGCGGACG 1014 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 GGTTAGCGTCGGTGGTCGGTAGCTCCGACTCGGCGGTGGTGGATCGGCTGAAGCAGCTGC 1074 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 CGAACGACTGTTCGTCCGAGGTGAGTAGCGAAATCAGCAAGCCCAGGATCACCGTCAGCA 1134 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 ACGTGCCAAGGCAACAAACCACATGTAGCTGATCTGGTAGACGGAGGCGAACCAGGATGA 1194 consensus_6793#1 ------------------------------------------------------------ consensus_6793#0 TGAACCGTCTTCCTGTCTGGCGGTGGTGGATAGCATTGACACATCGCTGGAAGC 1248 consensus_6793#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||