These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1102 fasta sequence [AAATCTATTCCAAGCACGGCTAACACACACCAAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCA-GCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT-GAACATTACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACGACACCGCCAGATGGCCATGCGCAGCTC-GGGTCGGTACCGAAATGCGCTCAACTTCAAGCCACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATG-CTTAAACGTAATGTTAAATTAGCCTTATATTTGTAATAAAAAAACA] [+] EMBL CNS09596 [AAATCTATTCCAAGCACGGCTAACACACACCAAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCA GCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT GAACATTACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAG CGATCA ] [+] EMBL CNS0948X [ AACACACACCAAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCA GCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGTACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGTGGAACATTA ] [-] EMBL CNS09597 [ CGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGGCAG TGCGCGGCATCATGCAGGAAGCGATCGATCACGCCTTGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTG GCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTTTCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT GAACATTACGCAGAGCTGCCGGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACGACACCGCCAGATGGCCATGCGCAGCTCGGGGTCGGTACCGAAATGCGCTCAACTTCAAGCCACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATGTCTTAAACGTAATGTTAAATTAGCCTTATATTTGTAATAAAAAAACA] [-] EMBL CNS0948Y [ GCGGCTGCAGAAGTACTTCCGCGAAATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGTACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT GAACATTACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACGACACCGCCAGATGGCCATGCGCAGCTC GGGTCGGTACCGAAATGCGCTCAACTTCAAGCCACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATG CTTAAACGTAATGTTAAATTAGCCTTATATTTGTAAAAAAAAAA ] consensusID : consensus_6796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGCACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCCTGCAGAAGTACTTCCGCGACATGGCGCTGATG] [+] EMBL BM586471 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGCACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCCTGCAGAAGTACTTCCGCGACATGGCGCTGATG] consensusID : consensus_6796#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [AGGCCNAATTTGGACGAGGCACAAAATCCTCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCGACAGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCCGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCCGTGGCGCGGCTGCCGAAGTACT] [+] EMBL AL694498 [AGGCCNAATTTGGACGAGGCACAAAATCCTCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCGACAGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCCGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCCGTGGCGCGGCTGCCGAAGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6796#0 AAATCTATTCCAAGCA-CGGCTAACACACACCAAAATCCCCTCCCCGGCTGCACGATGGC 59 consensus_6796#1 -----CCGCCCACGCGTCCGCCCACGCGT-CCGAAATCCCCTCCCCGGCTGCACGATGGC 54 consensus_6796#2 ------AGGCCNAATT-TGGACGAGGCAC---AAAATCCTCTCCCCGGCTGCACGATGGC 50 ** * * * ****** ******************** consensus_6796#0 GAATCTGCGCGATATTACCGCGAAAAAA-TACGCCCGCCCCACGATCAACGTTGCGATCC 118 consensus_6796#1 GAATCTGCGCGATATTACCGCGAAAAAA-TACGCCCGCCCCACGATCAACGTTGCGATCC 113 consensus_6796#2 GAATCTGCGCGATATTACCGCGAAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCC 110 **************************** ******************************* consensus_6796#0 ATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACA 178 consensus_6796#1 ATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGCACCGACTACA 173 consensus_6796#2 ATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGC-GACAGTACCGACTACA 169 ***** ************************************* *** * ********** consensus_6796#0 GGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGC 238 consensus_6796#1 GGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGC 233 consensus_6796#2 GGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGC 229 ************************************************************ consensus_6796#0 CGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCA 298 consensus_6796#1 CGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCA 293 consensus_6796#2 CGCTCCGCGAGTCCGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCA 289 ************* ********************************************** consensus_6796#0 TGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCG 358 consensus_6796#1 TGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCG 353 consensus_6796#2 TGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCG 349 ************************************************************ consensus_6796#0 ACTTTGAGTACATTATGCGCAAAAATCAGGTGCGC-GTGGCGCGGC-TGCAGAAGTACTT 416 consensus_6796#1 ACTTTGAGTACATTATGCGCAAAAATCAGGTGCGC-GTGGCGCGGCCTGCAGAAGTACTT 412 consensus_6796#2 ACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCCGTGGCGCGGC-TGCCGAAGTACT- 407 *********************************** ********** *** ******** consensus_6796#0 CCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCA 476 consensus_6796#1 CCGCGACATGGCGCTGATG----------------------------------------- 431 consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 CCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGA 536 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 AAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCT 596 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 CACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAA 656 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 CACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGTGAACAT 716 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 TACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGT 776 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 GGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCG 836 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 GGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGG 896 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 CCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACG 956 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 ACACCGCCAGATGGCCATGCGCAGCTCGGGTCGGTACCGAAATGCGCTCAACTTCAAGCC 1016 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 ACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATGCTTAAACGTAATGTTAAATT 1076 consensus_6796#1 ------------------------------------------------------------ consensus_6796#2 ------------------------------------------------------------ consensus_6796#0 AGCCTTATATTTGTAATAAAAAAACA 1102 consensus_6796#1 -------------------------- consensus_6796#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||