These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1053 fasta sequence [CCGGGATCAACGAACAAAGTCGTTGATATGTAAACAAAAGGAAAAATCAGGATTCGGGTGGGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGGGAA-CCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGTGTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCTTCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCCAGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAGTCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCAAAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGTCGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGAAATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGATGGTGATGGACATTACGAAAGGCGTGGACGTTCGATTACGTGTGCCGGGAGCTGCTCAAGGTGCCGACCGACATTCCGGTGCTGCTGCTCGGCAATCACTGTGATATGGGACACCATCGCGTGATTACGGCGGAACAGGTGCACGGGTTCGTCGAGACGGCCAGCCAGGAGCGGAAGGCGGAAATCGTGTACGGGGACAGCTCGATGCGCAACGGGTTCGGGCTGCGGCTGCTGCACAAGTTCTTCGGCATTCCATTCCTCTACCTGCAGAAGAGTGCCCTCGAGGCGTCGCTGAGGAAAAACGCACAGGATCTCGACATCTGCCGGCTGGAGATCGATGAATATCAGAAGTCCGACGACTCCGATTACGGACGCTTTCTGGATAATCTGATC] [+] EMBL BM622185 [CCGGGATCAACGAACAAAGTCGTTGATATGTAAACAAAAGGAAAAATCAGGATTCGGGTGGGTGGAAAAGTTAGAGCCCCAAAGGTGGAAAACCTACCAACTGTTTTGGTGGGTTCAAGGGAACCCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGA GTGTGTGTGTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCTTCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCCAGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAGTCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCAAAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGTCGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGAAATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGT ] [+] EMBL BM655948 [ ccgCGTTGATATGTAAACAAAAGGAAAAATCAGGATTCGGGTGGGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGGGAA CCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGTGTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCTTCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCCAGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAGTCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCAAAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGTCGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGAAATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGATGGTGATGGACATTACGAAAGGCGTGGACGTTCGATTACGTG ] [+] EMBL BM632575 [ ccgCAGGATTCGGGTGGGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGGGAA CCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGTGTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCTTCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCCAGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGATAGTCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCAAAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGTCGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGAAATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGATGGTGATGGACATTACGA ] [+] EMBL BM630297 [ ccgAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGATGGTGATGGACATTACG AAGGCGTGGACGTTCGATTACGTGTGCCGGGAGCTGCTCAAGGTGCCGACCGACATTCCGGTGCTGCTGCTCGGCAATCACTGTGATATGGGACACCATCGCGTGATTACGGCGGAACAGGTGCACGGGTTCGTCGAGACGGCCAGCCAGGAGCGGAAGGCGGAAATCGTGTACGGGGACAGCTCGATGCGCAACGGGTTCGGGCTGCGGCTGCTGCACAAGTTCTTCGGCATTCCATTCCTCTACCTGCAGAAGAGTGCCCTCGAGGCGTCGCTGAGGAAAAACGCACAGGATCTCGACATCTGCCGGCTGGAGATCGATGAATATCAGAAGTCCGACGACTCCGATTACGGACGCTTTCTGGATAATCTGATC] consensusID : consensus_6801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGGTGGGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGGGAACCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGTGTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCTTCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCCAGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAGTCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCAAAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGTCGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGAAATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGATGGTGATGGACATTACGAAGGCGTGGACGTTTCGATTACGTGTGCCGGGAGCTGCCCAAGGTGC] [+] EMBL BM611924 [CCGCCCACGCGTCCGGTGGGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGGGAACCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGTGTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCTTCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCCAGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAGTCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCAAAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGTCGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGAAATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCGACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGATGGTGATGGACATTACGAAGGCGTGGACGTTTCGATTACGTGTGCCGGGAGCTGCCCAAGGTGC] consensusID : consensus_6801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 75 fasta sequence [TGATGGTGACTGGACATTACGAAGGCGTGGACTGTTCGATTACGTGTGCCTGGGAGCTGCCAATGTGCGACGACA] [+] EMBL AL694586 [TGATGGTGACTGGACATTACGAAGGCGTGGACTGTTCGATTACGTGTGCCTGGGAGCTGCCAATGTGCGACGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6801#0 CCGGGATCAACGAACAAAGTCGTTGATATGTAAACAAAAGGAAAAATCAGGATTCGGGTG 60 consensus_6801#1 ------------------------------------------CCGCCCACGCGTCCGGTG 18 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 GGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGG 120 consensus_6801#1 GGTGGAAAAGTTAGAGCCACCAAGGTGGAAAACCTACCAGCTGTTTTGGTGGGTTCAAGG 78 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 GAACCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGT 180 consensus_6801#1 GAACCCGTAGTGCGTCATCCCGAATGCAACAGTTCCATCGATAAGGGAGCGTGTGTGTGT 138 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 GTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCT 240 consensus_6801#1 GTGCCTGTGATGAGTGGAGCGTAATCTCGTCGCCCGCAAGTCGAGTCATGTTTTCCGTCT 198 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 TCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCC 300 consensus_6801#1 TCAAGAAGCTAGCCAACAAAAACGATGGCCCGACCGTGTCGATACCGGAGTCCGTTGGCC 258 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 AGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAG 360 consensus_6801#1 AGACGATGTCGGATTCGCTTAAGAAGCGATTTTCCCGTGGCGTCCAGTACAACATGAAAG 318 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 TCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCA 420 consensus_6801#1 TCGTGATCAAGGGCGATCGGAACGTGGGCAAATCGTGTCTGCTGGAGCGGCTGCAGGGCA 378 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 AAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGT 480 consensus_6801#1 AAGCCTTCATCGAGCAGTACACGCCGACGGAGCAGATCCAGGTCGCCAGCATCCAGTGGT 438 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 CGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGA 540 consensus_6801#1 CGTTCAAGGCGACGGACGACGTGGTCAAGGTGGAGGTGTGGGACGTGGTGGACCGTGGGA 498 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 AATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCG 600 consensus_6801#1 AATCGAAGCAGAAGAGCACGAACCTGAAGCTGACGACGGCCGGCGCAGGTGCGGAACCCG 558 consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 ACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGA 660 consensus_6801#1 ACATTCCCGTGCTGGACGCCGAGTTTCTCGACGTGTACAAGGGCACCCACTGTGTGGTGA 618 consensus_6801#2 ---------------------------------------------------------TGA 3 *** consensus_6801#0 TGGTGA-TGGACATTACGAAAGGCGTGGACGTT-CGATTACGTGTGCC-GGGAGCTGCTC 717 consensus_6801#1 TGGTGA-TGGACATTACGAA-GGCGTGGACGTTTCGATTACGTGTGCC-GGGAGCTGCCC 675 consensus_6801#2 TGGTGACTGGACATTACGAA-GGCGTGGACTGTTCGATTACGTGTGCCTGGGAGCTGC-C 61 ****** ************* ********* * ************** ********* * consensus_6801#0 AAGGTGCCGACCGACATTCCGGTGCTGCTGCTCGGCAATCACTGTGATATGGGACACCAT 777 consensus_6801#1 AAGGTGC----------------------------------------------------- 682 consensus_6801#2 AATGTGCGACGACA---------------------------------------------- 75 ** **** consensus_6801#0 CGCGTGATTACGGCGGAACAGGTGCACGGGTTCGTCGAGACGGCCAGCCAGGAGCGGAAG 837 consensus_6801#1 ------------------------------------------------------------ consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 GCGGAAATCGTGTACGGGGACAGCTCGATGCGCAACGGGTTCGGGCTGCGGCTGCTGCAC 897 consensus_6801#1 ------------------------------------------------------------ consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 AAGTTCTTCGGCATTCCATTCCTCTACCTGCAGAAGAGTGCCCTCGAGGCGTCGCTGAGG 957 consensus_6801#1 ------------------------------------------------------------ consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 AAAAACGCACAGGATCTCGACATCTGCCGGCTGGAGATCGATGAATATCAGAAGTCCGAC 1017 consensus_6801#1 ------------------------------------------------------------ consensus_6801#2 ------------------------------------------------------------ consensus_6801#0 GACTCCGATTACGGACGCTTTCTGGATAATCTGATC 1053 consensus_6801#1 ------------------------------------ consensus_6801#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||