cluster # 6810

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Anopheles gambiae
cluster # 6810 cluster # 6810 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6810#0 length = 771 sequences # 3
consensus_6810#1 length = 605 sequences # 1

consensus_6810#2 length = 385 sequences # 1
consensus_6810#3 length = 257 sequences # 1

consensusID : consensus_6810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 771
fasta sequence

                              [GAATTGCCCGAGGTTTGCTCTCCGAGGTGGAACCGATTCGCGGAAATAAGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC-AATCGACGGAGCTGCAGAAC-ATTGTCGTCCG-CGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAACAATACCNGCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA]

[+] EMBL AL694633             [GAATTGCCCGAGGTTTGCTCTCCGAGGTGGAACCGATTCGCGGAAATAAGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCG CAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC AATCGACGGAGCTGCAGAAC ATTGTCGTCCG CGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGG                                                                                                                                                                                                     ]
[+] EMBL AL934586             [GAATCGCCCGAG    GC CT  GAGGTGGAA CGATTCGCGGAAAT AGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCG TGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTCAAATCGACGGAGCTGCAGAACAATTGTCGTCCGCCGGATTCATTGACTGGAACGCAATT                                                                                                                                                                                                                                    ]
[+] EMBL BX626111             [                                   ATTCTTGNAAATAAGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC AATCGACGGAGCTGCAGAAC ATTGTCGTCCG CGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAACAATACCNGCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA]




>consensus_6810#0
GAATTGCCCGAGGTTTGCTCTCCGAGGTGGAACCGATTCGCGGAAATAAGTAAATCAGTG
ACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAA
AGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCAT
CAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAG
CTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGT
GAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCC
ACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGC
CGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCT
CAGGTTCAATCGACGGAGCTGCAGAACATTGTCGTCCGCGGATTCATTGACTGGAACGCA
ATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGAT
TACTTCACCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTG
GATGATAATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAAC
AATACCNGCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA

consensusID : consensus_6810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTTCAACAACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTTGTAACGGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACACAAAAACAAC]

[+] EMBL AL929912             [CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTTCAACAACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTTGTAACGGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACACAAAAACAAC]




>consensus_6810#1
CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGT
GAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCC
ACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGC
CGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCT
CAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAACGCA
ATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGAT
TACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGG
ATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTTCAACA
ACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTTGTAAC
GGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACACAAAA
ACAAC

consensusID : consensus_6810#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [ATCCCCCGAGGNTNTGAGTGCGCGTACACTAGCTGACAATTGTTTGAAACCAACAAAAAGTCTATACAAAATGAAGAGCCTGTTCGTTTGTTTGCTGCTGGCGCTGGCAGGGGCAGTCTCTCGCTCAAAGCCAAGATGAGTTCGTTGAGTATCTGCTGGAGATCCAAAGCCAGGCTGAATCGGTCCATCAGCTGATGGAGGGTACGTTCGACAATGTTCGCTTCTCGATGAGTGATGAACTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCGACGTAGCCGTCGCTAACTGGGCTGT]

[+] EMBL AL932382             [ATCCCCCGAGGNTNTGAGTGCGCGTACACTAGCTGACAATTGTTTGAAACCAACAAAAAGTCTATACAAAATGAAGAGCCTGTTCGTTTGTTTGCTGCTGGCGCTGGCAGGGGCAGTCTCTCGCTCAAAGCCAAGATGAGTTCGTTGAGTATCTGCTGGAGATCCAAAGCCAGGCTGAATCGGTCCATCAGCTGATGGAGGGTACGTTCGACAATGTTCGCTTCTCGATGAGTGATGAACTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCGACGTAGCCGTCGCTAACTGGGCTGT]




>consensus_6810#2
ATCCCCCGAGGNTNTGAGTGCGCGTACACTAGCTGACAATTGTTTGAAACCAACAAAAAG
TCTATACAAAATGAAGAGCCTGTTCGTTTGTTTGCTGCTGGCGCTGGCAGGGGCAGTCTC
TCGCTCAAAGCCAAGATGAGTTCGTTGAGTATCTGCTGGAGATCCAAAGCCAGGCTGAAT
CGGTCCATCAGCTGATGGAGGGTACGTTCGACAATGTTCGCTTCTCGATGAGTGATGAAC
TGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAAC
AGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCG
ACGTAGCCGTCGCTAACTGGGCTGT

consensusID : consensus_6810#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [CACTGAAGCAGATCGGCGAGGCGNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTACGTTTGTTAGTGCTGCTGGCCCTGGCCGGGTCAATCGCTTGCGTCAAGAGGCCAAGATGAGTTCGTGGAGTATCNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGATGGAGGGGTACGNTTCGAACAAGTGGTTCGCTTCGGTCGAGTGAGCGACCAGGCTGGGTTGAGCGTGATACCCGGTC]

[+] EMBL BX466353             [CACTGAAGCAGATCGGCGAGGCGNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTACGTTTGTTAGTGCTGCTGGCCCTGGCCGGGTCAATCGCTTGCGTCAAGAGGCCAAGATGAGTTCGTGGAGTATCNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGATGGAGGGGTACGNTTCGAACAAGTGGTTCGCTTCGGTCGAGTGAGCGACCAGGCTGGGTTGAGCGTGATACCCGGTC]




>consensus_6810#3
CACTGAAGCAGATCGGCGAGGCGNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTAC
GTTTGTTAGTGCTGCTGGCCCTGGCCGGGTCAATCGCTTGCGTCAAGAGGCCAAGATGAG
TTCGTGGAGTATCNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGA
TGGAGGGGTACGNTTCGAACAAGTGGTTCGCTTCGGTCGAGTGAGCGACCAGGCTGGGTT
GAGCGTGATACCCGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6810#2      ----------------ATCCCCCGAGGNTNTGAGTGCGCGTACAC-TAGCTGACAATTGT 43
consensus_6810#3      ------------------------------------------CAC-TGAAGCAGATCGGC 17
consensus_6810#0      -----------------------GAATTGCCCGAGGTTTGCTCTC-CGAGGTGGAACCGA 36
consensus_6810#1      CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGT 60
                                                                            *   * 

consensus_6810#2      TTGAA-ACCAACAAA-AAGTCTATACAAAATGAAGAGCCTGTTCGTTTGTT--TGCTGCT 99
consensus_6810#3      GAGGC-GNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTACGTTTGTTAGTGCTGCT 76
consensus_6810#0      TTCGC-GGAAATAAGTAAATCAGTGAC-CATGAAGAGTTTGTTCGTTTGTT--TGCTGCT 92
consensus_6810#1      GAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCC 120
                                *        **                    * * * ****  **  ** 

consensus_6810#2      GGCGCTGGCAGGGGCAGTCTC-TCGC-TCAA--AGCCAAGATGAGTT-CGTTGAGT--AT 152
consensus_6810#3      GGCCCTGGCCGGGTCAATCGC-TTGCGTCAAGAGGCCAAGATGAGTT-CGTGGAGT--AT 132
consensus_6810#0      GGCCCTGGCCGG-TCAATCGC-TTGC-TCAA--AGCCAAGATGAGTT-CGTGGAGT--AT 144
consensus_6810#1      ACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGC 180
                        * *   * **   *      * *    *    * ** * *  **  *** * *     

consensus_6810#2      CT-GCTGGAGATCCAAA-GCCAGGCTGAA--TCGGTCCATCAG-CTGATGGAGGG----- 202
consensus_6810#3      CNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGATGGAGGGG---- 188
consensus_6810#0      CT-GCTGGAGATCCAGT-ACCAGGCGGAAG--CCATCCATCAG-CTGATGGAGGG----- 194
consensus_6810#1      CGCGCTAACATTCAGATCACCTCGCGTACCGCCGA-CGTTCATGCTGCTCTAGAGGCCGC 239
                      *  ***     **      **  **  *    *   *  ***  *** *  ** *     

consensus_6810#2      TACGTTC--GACAA--TGTTCGCTTCTCGATGA-GTGA-TGAACTGGTTGAGCTGAAC-C 255
consensus_6810#3      TACGNTTCGAACAAGTGGTTCGCTTCG-GTCGA-GTGAGCGACCAGGCTGGGTTGAGCGT 246
consensus_6810#0      TACTTTC--GACAA--TGTTCGCTTCTCGATGA-GCGA-CCAGCTGGTTGAGCTGAAC-C 247
consensus_6810#1      TCAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAAC-- 297
                      *    *     * *       ** *      *  *             **    ** *  

consensus_6810#2      GTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATA 315
consensus_6810#3      GATACCCGGTC------------------------------------------------- 257
consensus_6810#0      GTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATA 307
consensus_6810#1      -GCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGT-GCTCAGATTCAGGACAAGT 355
                         *   *                                                    

consensus_6810#2      CGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCGACGTAGCCGTCGCTA 375
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      CGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCA 367
consensus_6810#1      ACGATTACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGA 415
                                                                                  

consensus_6810#2      ACTGGGCTGT-------------------------------------------------- 385
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      ACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTA 427
consensus_6810#1      TCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTT 475
                                                                                  

consensus_6810#2      ------------------------------------------------------------
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      ACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC 487
consensus_6810#1      CAACAACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTT 535
                                                                                  

consensus_6810#2      ------------------------------------------------------------
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      AATCGACGGAGCTGCAGAACATTGTCGTCCGCGGATTCATTGACTGGAACGCAATTGACT 547
consensus_6810#1      GTAACGGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACA 595
                                                                                  

consensus_6810#2      ------------------------------------------------------------
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      ACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCA 607
consensus_6810#1      CAAAAACAAC-------------------------------------------------- 605
                                                                                  

consensus_6810#2      ------------------------------------------------------------
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      CCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATA 667
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#2      ------------------------------------------------------------
consensus_6810#3      ------------------------------------------------------------
consensus_6810#0      ATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAACAATACCN 727
consensus_6810#1      ------------------------------------------------------------
                                                                                  

consensus_6810#2      --------------------------------------------
consensus_6810#3      --------------------------------------------
consensus_6810#0      GCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA 771
consensus_6810#1      --------------------------------------------