These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 771 fasta sequence [GAATTGCCCGAGGTTTGCTCTCCGAGGTGGAACCGATTCGCGGAAATAAGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC-AATCGACGGAGCTGCAGAAC-ATTGTCGTCCG-CGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAACAATACCNGCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA] [+] EMBL AL694633 [GAATTGCCCGAGGTTTGCTCTCCGAGGTGGAACCGATTCGCGGAAATAAGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCG CAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC AATCGACGGAGCTGCAGAAC ATTGTCGTCCG CGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGG ] [+] EMBL AL934586 [GAATCGCCCGAG GC CT GAGGTGGAA CGATTCGCGGAAAT AGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCG TGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTCAAATCGACGGAGCTGCAGAACAATTGTCGTCCGCCGGATTCATTGACTGGAACGCAATT ] [+] EMBL BX626111 [ ATTCTTGNAAATAAGTAAATCAGTGACCATGAAGAGTTTGTTCGTTTGTTTGCTGCTGGCCCTGGCCGGTCAATCGCTTGCTCAAAGCCAAGATGAGTTCGTGGAGTATCTGCTGGAGATCCAGTACCAGGCGGAAGCCATCCATCAGCTGATGGAGGGTACTTTCGACAATGTTCGCTTCTCGATGAGCGACCAGCTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC AATCGACGGAGCTGCAGAAC ATTGTCGTCCG CGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAACAATACCNGCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA] consensusID : consensus_6810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTTCAACAACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTTGTAACGGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACACAAAAACAAC] [+] EMBL AL929912 [CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTAACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAACGCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTTCAACAACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTTGTAACGGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACACAAAAACAAC] consensusID : consensus_6810#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ATCCCCCGAGGNTNTGAGTGCGCGTACACTAGCTGACAATTGTTTGAAACCAACAAAAAGTCTATACAAAATGAAGAGCCTGTTCGTTTGTTTGCTGCTGGCGCTGGCAGGGGCAGTCTCTCGCTCAAAGCCAAGATGAGTTCGTTGAGTATCTGCTGGAGATCCAAAGCCAGGCTGAATCGGTCCATCAGCTGATGGAGGGTACGTTCGACAATGTTCGCTTCTCGATGAGTGATGAACTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCGACGTAGCCGTCGCTAACTGGGCTGT] [+] EMBL AL932382 [ATCCCCCGAGGNTNTGAGTGCGCGTACACTAGCTGACAATTGTTTGAAACCAACAAAAAGTCTATACAAAATGAAGAGCCTGTTCGTTTGTTTGCTGCTGGCGCTGGCAGGGGCAGTCTCTCGCTCAAAGCCAAGATGAGTTCGTTGAGTATCTGCTGGAGATCCAAAGCCAGGCTGAATCGGTCCATCAGCTGATGGAGGGTACGTTCGACAATGTTCGCTTCTCGATGAGTGATGAACTGGTTGAGCTGAACCGTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCGACGTAGCCGTCGCTAACTGGGCTGT] consensusID : consensus_6810#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [CACTGAAGCAGATCGGCGAGGCGNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTACGTTTGTTAGTGCTGCTGGCCCTGGCCGGGTCAATCGCTTGCGTCAAGAGGCCAAGATGAGTTCGTGGAGTATCNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGATGGAGGGGTACGNTTCGAACAAGTGGTTCGCTTCGGTCGAGTGAGCGACCAGGCTGGGTTGAGCGTGATACCCGGTC] [+] EMBL BX466353 [CACTGAAGCAGATCGGCGAGGCGNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTACGTTTGTTAGTGCTGCTGGCCCTGGCCGGGTCAATCGCTTGCGTCAAGAGGCCAAGATGAGTTCGTGGAGTATCNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGATGGAGGGGTACGNTTCGAACAAGTGGTTCGCTTCGGTCGAGTGAGCGACCAGGCTGGGTTGAGCGTGATACCCGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6810#2 ----------------ATCCCCCGAGGNTNTGAGTGCGCGTACAC-TAGCTGACAATTGT 43 consensus_6810#3 ------------------------------------------CAC-TGAAGCAGATCGGC 17 consensus_6810#0 -----------------------GAATTGCCCGAGGTTTGCTCTC-CGAGGTGGAACCGA 36 consensus_6810#1 CCCCGAGGTTTAGTTGATTGGCCGCATGAACGAAGCCTTGAGGATGTCGAACAGATCCGT 60 * * consensus_6810#2 TTGAA-ACCAACAAA-AAGTCTATACAAAATGAAGAGCCTGTTCGTTTGTT--TGCTGCT 99 consensus_6810#3 GAGGC-GNGTATAAGTAAATCAGTGACATGCCAAGAGTTGTTACGTTTGTTAGTGCTGCT 76 consensus_6810#0 TTCGC-GGAAATAAGTAAATCAGTGAC-CATGAAGAGTTTGTTCGTTTGTT--TGCTGCT 92 consensus_6810#1 GAGGATACGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCC 120 * ** * * * **** ** ** consensus_6810#2 GGCGCTGGCAGGGGCAGTCTC-TCGC-TCAA--AGCCAAGATGAGTT-CGTTGAGT--AT 152 consensus_6810#3 GGCCCTGGCCGGGTCAATCGC-TTGCGTCAAGAGGCCAAGATGAGTT-CGTGGAGT--AT 132 consensus_6810#0 GGCCCTGGCCGG-TCAATCGC-TTGC-TCAA--AGCCAAGATGAGTT-CGTGGAGT--AT 144 consensus_6810#1 ACCGCCAACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGC 180 * * * ** * * * * * ** * * ** *** * * consensus_6810#2 CT-GCTGGAGATCCAAA-GCCAGGCTGAA--TCGGTCCATCAG-CTGATGGAGGG----- 202 consensus_6810#3 CNTGCTGGAGATCCAGGTACCAGGCGGAAGGCCATCCAGTCAGGCTGATGGAGGGG---- 188 consensus_6810#0 CT-GCTGGAGATCCAGT-ACCAGGCGGAAG--CCATCCATCAG-CTGATGGAGGG----- 194 consensus_6810#1 CGCGCTAACATTCAGATCACCTCGCGTACCGCCGA-CGTTCATGCTGCTCTAGAGGCCGC 239 * *** ** ** ** * * * *** *** * ** * consensus_6810#2 TACGTTC--GACAA--TGTTCGCTTCTCGATGA-GTGA-TGAACTGGTTGAGCTGAAC-C 255 consensus_6810#3 TACGNTTCGAACAAGTGGTTCGCTTCG-GTCGA-GTGAGCGACCAGGCTGGGTTGAGCGT 246 consensus_6810#0 TACTTTC--GACAA--TGTTCGCTTCTCGATGA-GCGA-CCAGCTGGTTGAGCTGAAC-C 247 consensus_6810#1 TCAGGTTCAATCGACGGAGCTGCNTAACATTGTCGTCCGCGGATTCATTGACTGGAAC-- 297 * * * * ** * * * ** ** * consensus_6810#2 GTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATA 315 consensus_6810#3 GATACCCGGTC------------------------------------------------- 257 consensus_6810#0 GTCAGTTGATTGGCCGCATGAACGAAGCCCTGGAGGAGGTCGAACAGATCCGTGAGGATA 307 consensus_6810#1 -GCAATTGACTACACTGAGCAGATCTCGGCTATTGTGGGT-GCTCAGATTCAGGACAAGT 355 * * consensus_6810#2 CGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTTCCTGTGTCGACGTAGCCGTCGCTA 375 consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 CGGAAGCGTTCGTCGGAGAGTCGTCCGCTCCTGCTACCTGTGTTAATGTAGCCACCGCCA 367 consensus_6810#1 ACGATTACTTCACCAGAATCACTCAGCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGA 415 consensus_6810#2 ACTGGGCTGT-------------------------------------------------- 385 consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 ACTGGGCTATCGAAATCGAAGGAGTCGGACAGGCTCTGTCGCGTTGCGCCAGCCGCGCTA 427 consensus_6810#1 TCTGGATGATAATCTGCTGCCTGAGATCGTGACCTGTGTCAATCGCGGTGTGGAGCGTTT 475 consensus_6810#2 ------------------------------------------------------------ consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 ACATTCAGATCACCTCGCGTACCGCCGACGTTCATGCTGCTCTAGAGGCCGCTCAGGTTC 487 consensus_6810#1 CAACAACTACGGCCGTGTCATCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGACATGTT 535 consensus_6810#2 ------------------------------------------------------------ consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 AATCGACGGAGCTGCAGAACATTGTCGTCCGCGGATTCATTGACTGGAACGCAATTGACT 547 consensus_6810#1 GTAACGGGCAAGAGTAAGAATAGCAATACACAAACATTAAAATATAACAAAAGACACACA 595 consensus_6810#2 ------------------------------------------------------------ consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 ACACTGAGCAGATCTCGGCTATTGTGGGTGCTCAGATTCAGGACAAGTACGATTACTTCA 607 consensus_6810#1 CAAAAACAAC-------------------------------------------------- 605 consensus_6810#2 ------------------------------------------------------------ consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 CCAGAATCACTCAGCCCAACTTGGAGCGCACTCTGCAGGGCATTTTCGATCTGGATGATA 667 consensus_6810#1 ------------------------------------------------------------ consensus_6810#2 ------------------------------------------------------------ consensus_6810#3 ------------------------------------------------------------ consensus_6810#0 ATCTGCTGCCTGAGATCGTGACCTGNGTCAATCGCGGTGTGGAGCGNTTCAACAATACCN 727 consensus_6810#1 ------------------------------------------------------------ consensus_6810#2 -------------------------------------------- consensus_6810#3 -------------------------------------------- consensus_6810#0 GCCGTGTCATTCCGCGACACGCTGTTCTTCTGCTCGCAGTAAGA 771 consensus_6810#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||