|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1321 fasta sequence
[CCGTGGAAAACAAACAAAAAAATGCCAGAACCAGAAAGAACACACAGGAAATGAAAGAGAGTTTCAAACTGTAGGATATAGTGAAATGGTAACTTTTGCAGCAGAAAGCAGAAACCCCGTACTAACAAATACTAAGCTCTGTATGATTTTATCGTTGTAAAACTTTCACAAAACGTCTCGGAACTTGTAGATCGAAAGTCGGTGACGGTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAATTTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTTTGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCC-GTGCCCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGGGTACCTTTCCTTTATTTACCCTTTACCTTCCCTGCTCAACAATCGTGGCCGGTACGGGCCCGCCAGTGAGCGTGTATGGCCGAATGTTGGTCGAAAGCATTAGATAAAGGTGTGGTTTTAATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAACCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACG-AGAAGAGCACTAAAGAAACACTAACAAACGTAAACGAAAAACACTTTTCACCATTCTAACAGTACTATAAAATAATTGAAGAATGTTGAAAAACAAGCAATGAAAAAAGAATGAGACAGTGACGAACGAACGAACGAAACAAAACAAAACAAAACAACATTACAACCACAAAGGACACAATTGTAAAATGACAACAATTATGCCAGCACACCACAATAACGCAGAGAGAAACAGAAGCAAAAGAAGGCAGTAAAGTTGAAAGCAAAACCAGAAAACACACTCGATCAATGGATTAATCTATGAGATTACACGTGCGTGTGGGCGATACGGGCGCGGTTGTGTGGCGTGCGGCATTAAAAAGGCAACATTCGAGCAACTATTATTGTAAAAGTATAATTTTTTAAGTAGACAAAATAAAAAACAACTA]
[+] EMBL BM609518 [CCGTGGAAAACAAACAAAAAAATGCCAGAACCAGAAAGAACACACAGGAAATGAAAGAGAGTTTCAAACTGTAGGATATAGTGAAATGGTAACTTTTGCAGCAGAAAGCAGAAACCCCGTACTAACAAATACTAAGCTCTGTATGATTTTATCGTTGTAAAACTTTCACAAAACGTCTCGGAACTTGTAGATCGAAAGTCGGTGACGGTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAATTTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTTTGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCCGGTGCCCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATAAATGTCGATCCCAACTTAAAGAGTGGTTGTTTGTTGGGGCATG ]
[+] EMBL BX611381 [ GGATATAGTGAAATGGTAACTTTTGCAGCAGAAAGCAGAAACCCCGTACTAACAAATACTAAGCTCTGTATGATTTTATCGTTGTAAAACTTTCACAAAACGTCTCGGAACTTGTAGATCGAAAGTCGGTGACGGTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAATTTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTTTGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCC GTGCCCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGGGTACCTTTCCTTTATTTACCCTTTACCTTCCCTGCTCAACAATCGTGGCCGGTACGGGCCCGCCAGTGAGCGTGTATGGCCGAAT ]
[+] EMBL BX618465 [ GTGTAGAGGGCGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCTTTTGTTTGATTAATTGTTGAGCAATTTAAACTTTCAAACG AAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGTTTTTGTCGACCAAAAGTCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACCACGGTGCGGTCGCGCC GTGCTCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATGAATGTCGATCCCAACTTAGAGAGTGGTTGGTTGTTGGGGCATGGGTACCTTTCCTTTATTTACCCTTTACCTTCCCTGTTCAACAATCGTGGCCGGTACGGGCCCGCCAGTGAGCGTGTATGGCCGAATGTTGGTCGAAAGCATTAGATAAAGGTGTGGTTTTAATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAACCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACGAAGAAGAGCACTAAAG ]
[+] EMBL BX612544 [ GAAGCGTTCATGAAGATTTTGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAATCAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCC GTGCCCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGGGTACCTTTCCTTTATTTACCCTTTACCTTCCCTGCTCAACAATCTTGGCCGGTACGGGCCCGCCAGTGAGCGTGTATGGCCGAATGTTGGTCGAAAGAATTAGACAAAGGTGTGGTTTTAATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAACCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACG AGAAGAGCACTAAAGAAACACTAACAAACGTAAACGAAAAACACTTTTCACCATTCTAACAGTACTATAAAATAATTGAAGAATGTTGAAAAACAAGCAATGAAAAAAGAATGAGACAGTGACGAACGAACGAACGAAACAAAACAAAACAAAACAACATTACAACCACAAAGGACACAATTGTAAAATGACAACAATTATGCCAGCACACCACAATAACGCAGAGAGAAACAGAAGCAAAAGAAGGCAGTAAAGTTGAAAGCAAAACCAGAAAACACACTCGATCAATGGATTAATCTATGAGATTACACGTGCGTGTGGGCGATACGGGCGCGGTTGTGTGGCGTGCGGCATTAAAAAGGCAACATTCGAGCAACTATTATTGTAAAAGTATAATTTTTTAAGTAGACAAAATAAAAAACAACTA]
consensusID : consensus_6815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 917 fasta sequence
[TGTAGATCGAAAGTCGGTGACGGTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAATTTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTTTGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCCGTGCCCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGGGTACCTTTTCTTTATTTACCCTTTACCTTCCCTGTTCAACAATCGTGGCCCGCTAGTGAGCGTGTGTGGCCGAATGTTGGTCGAAAGCATTAGATAAAGGTGTGGTTTTAATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAACCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACGAGAAGAGCACTAAAGAAACACTAACAAACGTAAACGAAAAACACTTTTCACCATTCTAACAGTACTATAAAATAATTG]
[+] EMBL BX611228 [TGTAGATCGAAAGTCGGTGACGGTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTAAGTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGACCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGGCGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAATTTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTTTGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCCGTGCCCCGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGGGTACCTTTTCTTTATTTACCCT ]
[+] EMBL BX617304 [ TCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCATCATTGCTTACAACGGTGCGGTCGCGCCGTGCCCTGCGGTTGTATAGATTGGATTGGCCAAAGTACTGTTTTAATGAATGTCGATCCCAACTTAGAGAGTGGTTGGTTGTTGGGGCATGGGTACCTTTCCTTTATTTACCCTTTACCTTCCCTGTTCAACAATCGTGGCCCGCTAGTGAGCGTGTGTGGCCGAATGTTGGTCGAAAGCATTAGATAAAGGTGTGGTTTTAATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAACCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACGAGAAGAGCACTAAAGAAACACTAACAAACGTAAACGAAAAACACTTTTCACCATTCTAACAGTACTATAAAATAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6815#0 CCGTGGAAAACAAACAAAAAAATGCCAGAACCAGAAAGAACACACAGGAAATGAAAGAGA 60
consensus_6815#1 --------------------------------------TGTAGATCGAAAGTCGGTGACG 22
* * * ** * **
consensus_6815#0 GTTTCAAACTGTAGGATATAGTGAAATGGTAACTTTTGCAGCAGAAAGCAGAAACCCCGT 120
consensus_6815#1 GTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAAGTCGATTAGTCATCGTACCAAGAGCG- 81
*** ** * * ** **** * * * * * ** **
consensus_6815#0 ACTAACAAATACTAAGCTCTGTATGATTTTATCGTTGTAAAACTTTCACAAAACGTCTCG 180
consensus_6815#1 ACGACAAAATACGAAAGTCTCTTT-ACTGGAGAGACCTAATGGTTGCTGCTGGGATCACA 140
** * ****** ** *** * * * * * * *** ** * ** *
consensus_6815#0 GAACTTGTAGATCGAAAGTCGGTGACGGTTCTCTTGGTTAAGTCGGGCTAAACTGGTTAA 240
consensus_6815#1 CCTCTGG-AGATCACACGTTAGTTAAG----TGTAGAGGGCGTTAGTGTAAACCGGTTAA 195
** * ***** * ** ** * * * * * ** * ***** ******
consensus_6815#0 GTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGA 300
consensus_6815#1 GTCGATTAGTCATCGTACCAAGAGCGACGACAAAATACGAAAGTCTCTTTACTGGAGAGA 255
************************************************************
consensus_6815#0 CCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGG 360
consensus_6815#1 CCTAATGGTTGCTGCTGGGATCACACCTCTGGAGATCACACGTTAGTTAAGTGTAGAGGG 315
************************************************************
consensus_6815#0 CGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAAT 420
consensus_6815#1 CGTTAGTGTAAACCGGTTGCCGCGCATGTCACCCATTTGTTTGATTGATTGTTGAGCAAT 375
************************************************************
consensus_6815#0 TTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTT 480
consensus_6815#1 TTAAACTTTCAAACGAAAAAAAAAACTAAAAAGCGATGAGCGAAGCGTTCATGAAGATTT 435
************************************************************
consensus_6815#0 TGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCA 540
consensus_6815#1 TGTCGACCAAAAGCCATTGTTTATGAGCAAGCGAAAACAACACTTGCAAGCAAACTTGCA 495
************************************************************
consensus_6815#0 TCATTGCTTACAACGGTGCGGTCGCGCCGTGCCCCGCGGTTGTATAGATTGGATTGGCCA 600
consensus_6815#1 TCATTGCTTACAACGGTGCGGTCGCGCCGTGCCCCGCGGTTGTATAGATTGGATTGGCCA 555
************************************************************
consensus_6815#0 AAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGG 660
consensus_6815#1 AAGTACTGTTTTAATAAATGTCGATCCCAACTTAGAGAGTGGTTGTTTGTTGGGGCATGG 615
************************************************************
consensus_6815#0 GTACCTTTCCTTTATTTACCCTTTACCTTCCCTGCTCAACAATCGTGGCCGGTACGGGCC 720
consensus_6815#1 GTACCTTTTCTTTATTTACCCTTTACCTTCCCTGTTCAACAATCGTGGCC---------- 665
******** ************************* ***************
consensus_6815#0 CGCCAGTGAGCGTGTATGGCCGAATGTTGGTCGAAAGCATTAGATAAAGGTGTGGTTTTA 780
consensus_6815#1 CGCTAGTGAGCGTGTGTGGCCGAATGTTGGTCGAAAGCATTAGATAAAGGTGTGGTTTTA 725
*** *********** ********************************************
consensus_6815#0 ATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAA 840
consensus_6815#1 ATAGGTCAAAAAACGAGTTCCAAATTACCGTCGCCCGTACGTAGCTCGAGCAAACTCGAA 785
************************************************************
consensus_6815#0 CCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACGAGAAGA 900
consensus_6815#1 CCAGAAGTCGACCAAAGTGCAATGAAATTCTATTAAAAGAAAAAAAAGGTTACGAGAAGA 845
************************************************************
consensus_6815#0 GCACTAAAGAAACACTAACAAACGTAAACGAAAAACACTTTTCACCATTCTAACAGTACT 960
consensus_6815#1 GCACTAAAGAAACACTAACAAACGTAAACGAAAAACACTTTTCACCATTCTAACAGTACT 905
************************************************************
consensus_6815#0 ATAAAATAATTGAAGAATGTTGAAAAACAAGCAATGAAAAAAGAATGAGACAGTGACGAA 1020
consensus_6815#1 ATAAAATAATTG------------------------------------------------ 917
************
consensus_6815#0 CGAACGAACGAAACAAAACAAAACAAAACAACATTACAACCACAAAGGACACAATTGTAA 1080
consensus_6815#1 ------------------------------------------------------------
consensus_6815#0 AATGACAACAATTATGCCAGCACACCACAATAACGCAGAGAGAAACAGAAGCAAAAGAAG 1140
consensus_6815#1 ------------------------------------------------------------
consensus_6815#0 GCAGTAAAGTTGAAAGCAAAACCAGAAAACACACTCGATCAATGGATTAATCTATGAGAT 1200
consensus_6815#1 ------------------------------------------------------------
consensus_6815#0 TACACGTGCGTGTGGGCGATACGGGCGCGGTTGTGTGGCGTGCGGCATTAAAAAGGCAAC 1260
consensus_6815#1 ------------------------------------------------------------
consensus_6815#0 ATTCGAGCAACTATTATTGTAAAAGTATAATTTTTTAAGTAGACAAAATAAAAAACAACT 1320
consensus_6815#1 ------------------------------------------------------------
consensus_6815#0 A 1321
consensus_6815#1 -
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||