These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1503 fasta sequence [TGAACCCATTTCCTTCTTCCTTTCCGTTTCTATCGGTTGGTCAGCCTCTCATTTGGAAACGGTCACGTACGTCACGATTTGTTTGAATGGCGACAAAATGGTGGTTAGTATGGAATGGGAAGCGTTTTGAAAGATAAGCGTGTAGGTGTGTGTTGGAAAGGAACATAAAAGTTTAATGGAACATTTAAATGTATCCTTTTCCGATGATTTATGTGACGAAACGAGATATTCTCCTTACGAATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTGATGTAAAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAGGCAGCTCATAAAAAAAAAAACAAAACAAAAACAAATAGTTTGACAACCCCTTACATTCCCCGAAACACGTAGATCGCAGATGGCAAGGTGAATTTGTTCTTAACTGTACTGTGCGCCCGTGTTGGGTGTTCTAGCGCGTTCGAGTTCAATCACTCGTGTTAGTAGTGTAATTTTCTTGCAGTTTAGTGCATTTTTCCCCGTCGAGCAGTGTACAAGACTCGATAGTGGAAAGAGTAGGGATGAAAGGCGTGGTGAAATGTGGCAGCCAGAAGTATCGACAGGAAGACAACAACAACATAAAGAAACACATCACGTACTGATCAAAGGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGATATAT--TATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTATGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATACATTCTTGATGGGTAG-TTCGGTGCATTGTATTGCAGCCCTACGATTGCAGATCGCTTCCCGGATGTGTGAGTGTGTATGGACAATGTGCTGGAGCAAATGGGAGTTCCGGTGCGGTCGGGGTGAAGCAAAGTGAAAGTGTTACGTTATTTACGAAAAATAAATCGAAGATTTCTGAGAAAACTTACCGAGGACCGTG] [+] EMBL BX612379 [TGAACCCATTTCCTTCTTCCTTTCCGTTTCTATCGGTTGGTCAGCCTCTCATTTGGAAACGGTCACGTACGTCACGATTTGTTTGAATGGCGACAAAATGGTGGTTAGTATGGAATGGGAAGCGTTTTGAAAGATAAGCGTGTAGGTGTGTGTTGGAAAGGAACATAAAAGTTTAATGGAACATTTAAATGTATCCTTTTCCGATGATTTATGTGACGAAACGAGATATTCTCCTTACGAATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTGATGTAAAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAG ] [+] EMBL BX615761 [ TTACGAATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTGATGTAAAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAA ] [+] EMBL BX609239 [ TTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAAAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGA ] [+] EMBL BX616522 [ TGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAGGCAGCTCATAAAAAAAAAAACAAAACAAAAACAAATAGTTTGACAACCCCTTACATTCCCCGAAACACGTAGATCGCAGATGGCAAGGTGAATTTGTTCTTAACTGTACTGTGCGCCCGTGTTGGGTGTTCTAGCGCGTTCGAGTTCAATCACTCGTGTTAGTAGTGTAATTTTCTTGCAGTTTAGTGCATTTTTCCCCGTCGAGCAGTGTACAAGACTCGATAGTGGAAAGAGTAGGGATGAAAGGCGTGGTGAAATGTGGCAGCCAGAAGTATCGACAGGAAGACAACAACAACATAAAGAAACACATCACGTACTGATCAAAGGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGATATAT TATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTATGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATACATTCTTGATGGGTAG TTCGGTGCATTGTATTGCAGCCCTACGATTGCAGATCGCTTCCCGGATGTGTGAGTGTGTATGGACAA ] [+] EMBL BM620426 [ ccGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGATATATTATATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTATGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATATATTCTTGAT GGTAGTTTCGGTGCATTGTATTGCAGCCTAACGATTGCCGATCGCTCCTTGGATGTGTGAGTGTGTATGGACAATGTGCTGGAGCAAATGGGAGTTCCGGTGCGGTCGGGGTGAAGCAAAGTGAAAGTGTTACGTTATTTACGAAAAATAAATCGAAGATTTCTGAGAAAACTTACCGAGGACCGTG] consensusID : consensus_6817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [ATCCCCGAGGTTAATCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTTGATGTAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCATCCCGTAAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAAGGCAGTCATATAAAAAAAAAAACAAAACNAAAACAAAATAGTTTGAAACCCTTACATTTCCCGAA] [+] EMBL AL692426 [ATCCCCGAGGTTAATCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTTGATGTAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCATCCCGTAAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAAGGCAGTCATATAAAAAAAAAAACAAAACNAAAACAAAATAGTTTGAAACCCTTACATTTCCCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6817#0 TGAACCCATTTCCTTCTTCCTTTCCGTTTCTATCGGTTGGTCAGCCTCTCATTTGGAAAC 60 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 GGTCACGTACGTCACGATTTGTTTGAATGGCGACAAAATGGTGGTTAGTATGGAATGGGA 120 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 AGCGTTTTGAAAGATAAGCGTGTAGGTGTGTGTTGGAAAGGAACATAAAAGTTTAATGGA 180 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 ACATTTAAATGTATCCTTTTCCGATGATTTATGTGACGAAACGAGATATTCTCCTTACGA 240 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 ATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTT 300 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 GTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTT 360 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 AGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTAT 420 consensus_6817#1 -------------ATCCCCGAGGTTAA---TCTGAAATGGTTAGCTTGATTGGCACTTAT 44 ** * ** ***************************** consensus_6817#0 CCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTC 480 consensus_6817#1 CCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTC 104 ************************************************************ consensus_6817#0 TTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGC 540 consensus_6817#1 TTATCTATTACTGCC-ACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGC 163 *************** ******************************************** consensus_6817#0 TTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTT-GATGTA 599 consensus_6817#1 TTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTTGATGTA 223 ***************************************************** ****** consensus_6817#0 AAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGA 659 consensus_6817#1 --ACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGA 281 ********************************************************** consensus_6817#0 ATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTG 719 consensus_6817#1 ATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTG 341 ************************************************************ consensus_6817#0 TAGACATTAACCCATCCCGTAA-CCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGT 778 consensus_6817#1 TAGACATTAACC-ATCCCGTAAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGT 400 ************ ********* ************************************* consensus_6817#0 T-GGCATCGGACTCTCTACAGACAGCTTGAGTGAA-GGCAGCT-CATAAAAAAAAAAACA 835 consensus_6817#1 TTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAAGGCAGTCATATAAAAAAAAAAACA 460 * ********************************* ***** *************** consensus_6817#0 AAACAAAAACAAA-TAGTTTGACAACCCCTTACATTCCCCGAAACACGTAGATCGCAGAT 894 consensus_6817#1 AAACNAAAACAAAATAGTTTGA--AACCCTTACATTTCCCGAA----------------- 501 **** ******** ******** * ********** ****** consensus_6817#0 GGCAAGGTGAATTTGTTCTTAACTGTACTGTGCGCCCGTGTTGGGTGTTCTAGCGCGTTC 954 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 GAGTTCAATCACTCGTGTTAGTAGTGTAATTTTCTTGCAGTTTAGTGCATTTTTCCCCGT 1014 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 CGAGCAGTGTACAAGACTCGATAGTGGAAAGAGTAGGGATGAAAGGCGTGGTGAAATGTG 1074 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 GCAGCCAGAAGTATCGACAGGAAGACAACAACAACATAAAGAAACACATCACGTACTGAT 1134 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 CAAAGGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGAT 1194 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 ATATTATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTA 1254 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 TGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATACATTCTTG 1314 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 ATGGGTAGTTCGGTGCATTGTATTGCAGCCCTACGATTGCAGATCGCTTCCCGGATGTGT 1374 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 GAGTGTGTATGGACAATGTGCTGGAGCAAATGGGAGTTCCGGTGCGGTCGGGGTGAAGCA 1434 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 AAGTGAAAGTGTTACGTTATTTACGAAAAATAAATCGAAGATTTCTGAGAAAACTTACCG 1494 consensus_6817#1 ------------------------------------------------------------ consensus_6817#0 AGGACCGTG 1503 consensus_6817#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||